Wall clock time and date at job start Mon Mar 30 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47307 * 2 1 4 4 C 1.35901 * 116.99764 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05715 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94062 * 180.02562 * 5 4 3 7 7 C 1.38280 * 120.06008 * 0.02562 * 6 5 4 8 8 C 1.38251 * 120.10988 * 359.95993 * 7 6 5 9 9 C 1.50699 * 119.97240 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47369 * 159.99772 * 9 8 7 11 11 C 1.53001 * 109.47539 * 280.00041 * 9 8 7 12 12 N 1.46901 * 109.47211 * 40.00155 * 9 8 7 13 13 C 1.46892 * 111.00277 * 153.56195 * 12 9 8 14 14 H 1.09002 * 109.47440 * 346.40544 * 13 12 9 15 15 C 1.53005 * 109.47110 * 106.40457 * 13 12 9 16 16 C 1.53002 * 109.47397 * 226.40187 * 13 12 9 17 17 C 1.50703 * 109.46926 * 65.00349 * 16 13 12 18 18 H 1.07997 * 119.99811 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99906 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99956 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46925 * 60.00017 * 21 19 17 23 23 H 1.48502 * 109.47168 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47306 * 300.00528 * 21 19 17 25 25 C 1.38164 * 120.05559 * 0.27358 * 8 7 6 26 26 H 1.09005 * 109.47167 * 59.99604 * 1 2 3 27 27 H 1.08997 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47181 * 300.00515 * 1 2 3 29 29 H 1.09003 * 109.47056 * 240.00156 * 2 1 3 30 30 H 1.08999 * 109.47359 * 120.00020 * 2 1 3 31 31 H 1.08002 * 120.02986 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.96773 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.95110 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46891 * 302.66249 * 11 9 8 35 35 H 1.08999 * 109.46982 * 62.65595 * 11 9 8 36 36 H 1.08991 * 109.47100 * 182.65823 * 11 9 8 37 37 H 1.00895 * 111.00185 * 277.52325 * 12 9 8 38 38 H 1.08995 * 109.47180 * 184.88430 * 15 13 12 39 39 H 1.08997 * 109.47109 * 64.87786 * 15 13 12 40 40 H 1.09000 * 109.46672 * 304.88690 * 15 13 12 41 41 H 1.08999 * 109.47268 * 185.00076 * 16 13 12 42 42 H 1.08991 * 109.47272 * 305.00062 * 16 13 12 43 43 H 0.97005 * 119.99990 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.02929 * 179.74288 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8876 0.0032 8 6 5.2552 2.9849 0.0030 9 6 5.8332 4.3766 0.0053 10 1 5.0814 5.0829 -0.3467 11 6 6.2579 4.7501 1.4270 12 7 7.0023 4.4228 -0.8830 13 6 7.2137 5.7795 -1.4049 14 1 6.3281 6.3850 -1.2123 15 6 8.4232 6.4099 -0.7116 16 6 7.4677 5.7123 -2.9122 17 6 6.2306 5.2058 -3.6079 18 1 5.3511 4.9572 -3.0326 19 6 6.2212 5.0609 -4.9790 20 7 7.2918 5.3651 -5.6797 21 14 4.6880 4.4325 -5.8414 22 1 3.5550 5.3534 -5.5702 23 1 4.9340 4.3685 -7.3045 24 1 4.3558 3.0766 -5.3350 25 6 3.8851 2.8066 0.0068 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5729 0.0005 32 1 6.2279 -0.2462 0.0020 33 1 7.1669 2.0292 0.0045 34 1 5.4004 4.6701 2.0951 35 1 7.0434 4.0725 1.7614 36 1 6.6323 5.7737 1.4372 37 1 7.8278 4.0837 -0.4122 38 1 8.5281 7.4456 -1.0346 39 1 9.3233 5.8543 -0.9746 40 1 8.2798 6.3789 0.3685 41 1 7.7121 6.7072 -3.2842 42 1 8.2989 5.0359 -3.1108 43 1 7.2853 5.2628 -6.6443 44 1 3.2285 3.6640 0.0107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299719412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:44 Heat of formation + Delta-G solvation = -27.476029 kcal Electronic energy + Delta-G solvation = -21695.796738 eV Core-core repulsion = 18612.820041 eV Total energy + Delta-G solvation = -3082.976697 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02946 -38.20037 -36.48807 -33.41886 -32.02913 -31.96187 -29.91132 -28.86787 -27.66512 -27.22026 -24.23872 -22.98764 -22.49165 -22.25354 -20.13560 -19.64300 -17.66224 -16.14330 -16.10036 -15.92833 -15.71361 -14.86623 -14.56161 -14.30537 -13.83313 -13.46358 -13.32556 -13.26034 -12.84863 -12.78011 -12.63245 -12.47849 -11.93712 -11.82566 -11.71449 -11.52272 -11.40467 -11.26136 -11.02706 -10.85699 -10.66573 -10.58540 -10.47717 -10.22546 -9.97324 -9.27399 -8.89055 -8.53283 -8.16907 -7.91704 -7.51022 -5.80166 -3.76894 1.60503 1.75757 3.24214 3.46253 3.49140 3.54669 4.03327 4.63804 4.75537 4.78298 4.85822 5.00907 5.09341 5.10199 5.29954 5.32151 5.42557 5.50658 5.57418 5.62320 5.67758 5.70651 5.75415 5.79955 5.85074 5.88180 5.98960 6.11833 6.15899 6.27178 6.29801 6.46116 6.53306 6.66733 6.73087 6.92410 7.05617 7.11868 7.58903 7.63318 7.76839 8.11185 8.14281 8.23967 8.68692 9.27327 9.83950 11.32026 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.005650 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.866591 B = 4954.762028 C = 6516.372431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.319 6.319 4 C 0.124 3.876 5 C -0.218 4.218 6 C -0.085 4.085 7 C -0.129 4.129 8 C -0.013 4.013 9 C 0.122 3.878 10 H 0.087 0.913 11 C -0.176 4.176 12 N -0.656 5.656 13 C 0.090 3.910 14 H 0.057 0.943 15 C -0.174 4.174 16 C 0.035 3.965 17 C -0.484 4.484 18 H 0.054 0.946 19 C 0.052 3.948 20 N -0.905 5.905 21 Si 0.885 3.115 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.148 4.148 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.328 0.672 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.014 0.986 42 H 0.019 0.981 43 H 0.256 0.744 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -8.685 15.764 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.080 3.920 5 C -0.237 4.237 6 C -0.103 4.103 7 C -0.148 4.148 8 C -0.014 4.014 9 C 0.011 3.989 10 H 0.105 0.895 11 C -0.235 4.235 12 N -0.285 5.285 13 C -0.019 4.019 14 H 0.075 0.925 15 C -0.233 4.233 16 C -0.002 4.002 17 C -0.523 4.523 18 H 0.072 0.928 19 C -0.147 4.147 20 N -0.546 5.546 21 Si 0.713 3.287 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.167 4.167 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.032 0.968 42 H 0.037 0.963 43 H 0.066 0.934 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.912 -8.739 15.011 18.694 hybrid contribution -0.390 -0.279 0.063 0.484 sum -7.303 -9.018 15.074 19.023 Atomic orbital electron populations 1.21768 0.93024 1.02589 1.03510 1.22709 0.95618 0.82458 1.01192 1.86049 1.19499 1.28782 1.89032 1.18868 0.81829 0.94139 0.97206 1.21088 0.94524 0.97459 1.10652 1.20865 0.94114 0.97265 0.98042 1.20808 0.99969 0.91568 1.02437 1.19647 0.91752 0.95601 0.94381 1.20579 0.94752 0.92686 0.90844 0.89476 1.22574 1.01599 1.01487 0.97808 1.60541 1.04985 1.25177 1.37807 1.21870 0.95190 0.86376 0.98481 0.92516 1.22514 1.00314 1.01619 0.98842 1.19121 0.97408 0.96504 0.87200 1.21070 0.98754 1.41355 0.91101 0.92790 1.24953 0.95760 0.96255 0.97771 1.69951 1.28111 1.50268 1.06270 0.86772 0.84010 0.79602 0.78277 1.20592 1.21652 1.20392 1.20231 0.94750 0.94649 1.07088 0.91473 0.90599 0.91640 0.92167 0.92340 0.86234 0.86262 0.85945 0.92492 0.92548 0.92245 0.85340 0.92563 0.92714 0.94184 0.96769 0.96309 0.93394 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.15 0.38 -0.89 16 2 C 0.06 0.59 5.46 37.15 0.20 0.79 16 3 O -0.32 -4.67 10.14 -19.43 -0.20 -4.87 16 4 C 0.12 1.95 6.69 -39.22 -0.26 1.69 16 5 C -0.22 -3.09 9.04 -39.43 -0.36 -3.44 16 6 C -0.08 -1.20 10.04 -39.61 -0.40 -1.60 16 7 C -0.13 -2.00 9.32 -39.56 -0.37 -2.37 16 8 C -0.01 -0.21 4.95 -104.64 -0.52 -0.73 16 9 C 0.12 1.96 2.73 -68.86 -0.19 1.77 16 10 H 0.09 1.51 7.20 -51.93 -0.37 1.14 16 11 C -0.18 -2.24 9.08 37.16 0.34 -1.90 16 12 N -0.66 -11.99 5.27 -100.95 -0.53 -12.53 16 13 C 0.09 1.78 2.63 -67.71 -0.18 1.60 16 14 H 0.06 1.15 7.14 -51.93 -0.37 0.78 16 15 C -0.17 -2.84 9.06 37.16 0.34 -2.50 16 16 C 0.04 0.91 4.65 -27.88 -0.13 0.78 16 17 C -0.48 -13.93 8.84 -34.44 -0.30 -14.23 16 18 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -28.01 13.29 55.43 0.74 -27.28 16 21 Si 0.88 22.93 29.54 -169.99 -5.02 17.91 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.15 -2.44 9.61 -39.43 -0.38 -2.82 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 31 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.77 7.29 -52.49 -0.38 1.39 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.06 0.74 6.87 -51.93 -0.36 0.38 16 37 H 0.33 5.34 7.29 -39.29 -0.29 5.05 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.55 6.78 -51.93 -0.35 0.20 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.13 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.33 356.96 -8.99 -41.33 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.44 Total: 2.48 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.92 Total: -22.42 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.20 Total: -39.80 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.20 Total: -4.87 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.33 -8.99 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299719412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.849 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds