Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42905 * 109.47307 * 2 1 4 4 C 1.35901 * 116.99764 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05715 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94062 * 180.02562 * 5 4 3 7 7 C 1.38280 * 120.06008 * 0.02562 * 6 5 4 8 8 C 1.38251 * 120.10988 * 359.95993 * 7 6 5 9 9 C 1.50699 * 119.97240 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47369 * 159.99772 * 9 8 7 11 11 C 1.53001 * 109.47539 * 280.00041 * 9 8 7 12 12 N 1.46901 * 109.47211 * 40.00155 * 9 8 7 13 13 C 1.46892 * 111.00277 * 153.56195 * 12 9 8 14 14 H 1.09002 * 109.47440 * 346.40544 * 13 12 9 15 15 C 1.53005 * 109.47110 * 106.40457 * 13 12 9 16 16 C 1.53002 * 109.47397 * 226.40187 * 13 12 9 17 17 C 1.50703 * 109.46926 * 65.00349 * 16 13 12 18 18 H 1.07997 * 119.99811 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99906 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99956 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46925 * 60.00017 * 21 19 17 23 23 H 1.48502 * 109.47168 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47306 * 300.00528 * 21 19 17 25 25 C 1.38164 * 120.05559 * 0.27358 * 8 7 6 26 26 H 1.09005 * 109.47167 * 59.99604 * 1 2 3 27 27 H 1.08997 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47181 * 300.00515 * 1 2 3 29 29 H 1.09003 * 109.47056 * 240.00156 * 2 1 3 30 30 H 1.08999 * 109.47359 * 120.00020 * 2 1 3 31 31 H 1.08002 * 120.02986 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.96773 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.95110 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.46891 * 302.66249 * 11 9 8 35 35 H 1.08999 * 109.46982 * 62.65595 * 11 9 8 36 36 H 1.08991 * 109.47100 * 182.65823 * 11 9 8 37 37 H 1.00895 * 111.00185 * 277.52325 * 12 9 8 38 38 H 1.08995 * 109.47180 * 184.88430 * 15 13 12 39 39 H 1.08997 * 109.47109 * 64.87786 * 15 13 12 40 40 H 1.09000 * 109.46672 * 304.88690 * 15 13 12 41 41 H 1.08999 * 109.47268 * 185.00076 * 16 13 12 42 42 H 1.08991 * 109.47272 * 305.00062 * 16 13 12 43 43 H 0.97005 * 119.99990 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.02929 * 179.74288 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4257 0.0005 6 6 5.5689 0.6094 0.0016 7 6 6.0962 1.8876 0.0032 8 6 5.2552 2.9849 0.0030 9 6 5.8332 4.3766 0.0053 10 1 5.0814 5.0829 -0.3467 11 6 6.2579 4.7501 1.4270 12 7 7.0023 4.4228 -0.8830 13 6 7.2137 5.7795 -1.4049 14 1 6.3281 6.3850 -1.2123 15 6 8.4232 6.4099 -0.7116 16 6 7.4677 5.7123 -2.9122 17 6 6.2306 5.2058 -3.6079 18 1 5.3511 4.9572 -3.0326 19 6 6.2212 5.0609 -4.9790 20 7 7.2918 5.3651 -5.6797 21 14 4.6880 4.4325 -5.8414 22 1 3.5550 5.3534 -5.5702 23 1 4.9340 4.3685 -7.3045 24 1 4.3558 3.0766 -5.3350 25 6 3.8851 2.8066 0.0068 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.7885 -0.5729 0.0005 32 1 6.2279 -0.2462 0.0020 33 1 7.1669 2.0292 0.0045 34 1 5.4004 4.6701 2.0951 35 1 7.0434 4.0725 1.7614 36 1 6.6323 5.7737 1.4372 37 1 7.8278 4.0837 -0.4122 38 1 8.5281 7.4456 -1.0346 39 1 9.3233 5.8543 -0.9746 40 1 8.2798 6.3789 0.3685 41 1 7.7121 6.7072 -3.2842 42 1 8.2989 5.0359 -3.1108 43 1 7.2853 5.2628 -6.6443 44 1 3.2285 3.6640 0.0107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299719412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = -46.433168 kcal Electronic energy + Delta-G solvation = -21696.618781 eV Core-core repulsion = 18612.820041 eV Total energy + Delta-G solvation = -3083.798740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.13150 -39.41860 -37.82482 -35.19006 -33.77836 -32.86939 -31.11612 -30.04727 -29.19342 -28.85561 -25.20895 -25.00534 -23.56322 -23.39410 -21.41403 -21.17044 -18.81498 -18.31144 -17.03743 -17.01634 -16.91545 -16.58779 -16.04880 -15.86554 -15.13258 -14.67620 -14.45892 -14.37988 -14.22796 -13.96452 -13.77744 -13.48623 -13.38224 -13.36999 -13.16101 -12.87793 -12.66942 -12.59393 -12.48673 -12.41794 -12.11259 -12.07060 -11.83881 -11.63551 -11.58266 -11.07734 -11.01687 -10.47137 -9.71174 -9.05541 -8.95542 -8.08903 -6.12047 0.44821 0.59309 1.36910 1.39670 1.47224 2.27818 2.45873 2.86793 3.23767 3.47082 3.86602 3.93378 4.04826 4.13108 4.16388 4.22873 4.35049 4.37259 4.39029 4.49053 4.53486 4.56020 4.61754 4.67469 4.81243 4.92663 4.98246 5.01119 5.03363 5.13937 5.18955 5.20392 5.32704 5.36989 5.40970 5.53827 5.59237 5.65857 5.81556 5.92611 5.93805 6.38515 6.51129 6.53813 6.84354 7.01933 7.52667 9.03154 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.005650 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.866591 B = 4954.762028 C = 6516.372431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.114 3.886 5 C -0.219 4.219 6 C -0.085 4.085 7 C -0.144 4.144 8 C -0.028 4.028 9 C 0.126 3.874 10 H 0.066 0.934 11 C -0.164 4.164 12 N -0.673 5.673 13 C 0.101 3.899 14 H 0.050 0.950 15 C -0.163 4.163 16 C 0.040 3.960 17 C -0.493 4.493 18 H 0.049 0.951 19 C -0.002 4.002 20 N -0.939 5.939 21 Si 0.946 3.054 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.279 1.279 25 C -0.174 4.174 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.341 0.659 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.072 0.928 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.258 0.742 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 -10.234 17.160 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.253 6.253 4 C 0.069 3.931 5 C -0.238 4.238 6 C -0.102 4.102 7 C -0.163 4.163 8 C -0.029 4.029 9 C 0.016 3.984 10 H 0.084 0.916 11 C -0.223 4.223 12 N -0.304 5.304 13 C -0.008 4.008 14 H 0.069 0.931 15 C -0.222 4.222 16 C 0.002 3.998 17 C -0.531 4.531 18 H 0.067 0.933 19 C -0.198 4.198 20 N -0.581 5.581 21 Si 0.772 3.228 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.204 1.204 25 C -0.193 4.193 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.067 0.933 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.582 -10.292 16.428 20.816 hybrid contribution -0.231 0.139 -0.367 0.456 sum -7.814 -10.152 16.061 20.545 Atomic orbital electron populations 1.21807 0.91487 1.04224 1.03041 1.23053 0.96910 0.80866 1.02156 1.86037 1.19000 1.31366 1.88905 1.19041 0.82654 0.94297 0.97088 1.21413 0.94466 0.98283 1.09606 1.21238 0.94655 0.97680 0.96675 1.21002 1.00294 0.92012 1.02972 1.19744 0.91956 0.95985 0.95165 1.20499 0.93221 0.92408 0.92305 0.91615 1.22440 1.02326 1.02028 0.95485 1.60286 1.06300 1.24282 1.39492 1.21501 0.96626 0.87705 0.94995 0.93126 1.22372 0.98302 1.01118 1.00405 1.19021 0.95244 0.94011 0.91521 1.21405 0.99505 1.40713 0.91486 0.93317 1.25741 0.98636 0.96701 0.98724 1.70071 1.30016 1.51508 1.06514 0.85793 0.80678 0.78895 0.77388 1.19630 1.20858 1.20439 1.20355 0.95026 0.95293 1.08601 0.92450 0.87876 0.91607 0.91807 0.90623 0.83560 0.83417 0.85263 0.91592 0.91235 0.91603 0.83950 0.92534 0.92699 0.90937 0.99232 0.99045 0.93329 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.47 16 2 C 0.04 0.86 5.46 71.98 0.39 1.25 16 3 O -0.34 -9.66 10.14 -92.44 -0.94 -10.59 16 4 C 0.11 3.50 6.69 22.51 0.15 3.65 16 5 C -0.22 -5.76 9.04 22.37 0.20 -5.56 16 6 C -0.08 -2.21 10.04 22.25 0.22 -1.99 16 7 C -0.14 -4.29 9.32 22.28 0.21 -4.09 16 8 C -0.03 -0.90 4.95 -19.88 -0.10 -1.00 16 9 C 0.13 4.00 2.73 44.17 0.12 4.12 16 10 H 0.07 2.34 7.20 -2.39 -0.02 2.32 16 11 C -0.16 -3.89 9.08 71.98 0.65 -3.24 16 12 N -0.67 -24.38 5.27 -473.31 -2.49 -26.87 16 13 C 0.10 4.03 2.63 44.92 0.12 4.15 16 14 H 0.05 2.07 7.14 -2.39 -0.02 2.05 16 15 C -0.16 -5.11 9.06 71.98 0.65 -4.46 16 16 C 0.04 2.11 4.65 29.85 0.14 2.25 16 17 C -0.49 -28.93 8.84 25.60 0.23 -28.71 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 19 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 20 N -0.94 -59.22 13.29 21.45 0.28 -58.93 16 21 Si 0.95 47.58 29.54 68.60 2.03 49.61 16 22 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 25 C -0.17 -5.77 9.61 22.37 0.21 -5.56 16 26 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 30 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 31 H 0.15 2.94 6.30 -2.91 -0.02 2.92 16 32 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.13 3.56 7.29 -2.91 -0.02 3.54 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.47 8.08 -2.39 -0.02 1.46 16 36 H 0.07 1.47 6.87 -2.39 -0.02 1.45 16 37 H 0.34 10.68 7.29 -89.70 -0.65 10.03 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.81 6.78 -2.39 -0.02 1.79 16 41 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.12 3.92 8.04 -2.91 -0.02 3.90 16 Total: -1.00 -70.72 356.96 3.59 -67.13 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.31 Total: 19.97 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 4.41 Total: -40.31 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.21 Total: -85.80 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.94 Total: -10.59 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -70.72 3.59 -67.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299719412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.695 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds