Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47358 * 2 1 4 4 C 1.35900 * 116.99991 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05502 * 0.02562 * 4 3 2 6 6 C 1.38126 * 119.94115 * 179.97438 * 5 4 3 7 7 C 1.38287 * 120.05357 * 359.75084 * 6 5 4 8 8 C 1.38242 * 120.11378 * 0.50527 * 7 6 5 9 9 C 1.50704 * 119.97267 * 179.76893 * 8 7 6 10 10 H 1.08997 * 109.46924 * 199.72240 * 9 8 7 11 11 C 1.53005 * 109.47127 * 79.72220 * 9 8 7 12 12 N 1.46896 * 109.46958 * 319.72474 * 9 8 7 13 13 C 1.46899 * 111.00161 * 205.00286 * 12 9 8 14 14 H 1.09009 * 109.46584 * 324.99605 * 13 12 9 15 15 C 1.52994 * 109.47404 * 84.99487 * 13 12 9 16 16 C 1.52996 * 109.47377 * 205.00092 * 13 12 9 17 17 C 1.50702 * 109.47159 * 64.99374 * 16 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 C 1.38169 * 120.05398 * 359.48985 * 8 7 6 26 26 H 1.09003 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46603 * 299.99966 * 1 2 3 28 28 H 1.09001 * 109.47423 * 59.99470 * 1 2 3 29 29 H 1.09005 * 109.46631 * 240.00552 * 2 1 3 30 30 H 1.09001 * 109.47423 * 120.00530 * 2 1 3 31 31 H 1.07994 * 120.02768 * 0.02562 * 5 4 3 32 32 H 1.07993 * 119.97014 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.94325 * 180.27351 * 7 6 5 34 34 H 1.08998 * 109.46788 * 180.02562 * 11 9 8 35 35 H 1.09003 * 109.46914 * 300.00091 * 11 9 8 36 36 H 1.09001 * 109.46666 * 60.00208 * 11 9 8 37 37 H 1.00903 * 111.00149 * 328.95220 * 12 9 8 38 38 H 1.09001 * 109.47340 * 60.00757 * 15 13 12 39 39 H 1.09003 * 109.47483 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47295 * 300.00618 * 15 13 12 41 41 H 1.09004 * 109.47066 * 304.99578 * 16 13 12 42 42 H 1.08994 * 109.47405 * 184.99408 * 16 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.02574 * 180.27758 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0016 6 6 5.5689 0.6093 -0.0027 7 6 6.0962 1.8877 -0.0079 8 6 5.2552 2.9849 -0.0015 9 6 5.8333 4.3766 -0.0020 10 1 5.0811 5.0826 0.3500 11 6 6.2592 4.7515 -1.4230 12 7 7.0015 4.4219 0.8873 13 6 7.2327 5.7849 1.3839 14 1 6.9717 6.5037 0.6071 15 6 6.3648 6.0317 2.6195 16 6 8.7077 5.9490 1.7558 17 6 9.5550 5.8274 0.5154 18 1 9.0881 5.6512 -0.4424 19 6 10.9258 5.9473 0.6024 20 7 11.4943 6.1623 1.7687 21 14 11.9754 5.8043 -0.9361 22 1 11.1004 5.5645 -2.1117 23 1 12.7366 7.0639 -1.1349 24 1 12.9237 4.6715 -0.7850 25 6 3.8850 2.8065 -0.0006 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.7885 -0.5728 -0.0024 32 1 6.2280 -0.2462 -0.0039 33 1 7.1669 2.0292 -0.0132 34 1 6.6777 5.7580 -1.4232 35 1 7.0114 4.0455 -1.7750 36 1 5.3922 4.7179 -2.0828 37 1 6.8996 3.7711 1.6517 38 1 6.6257 5.3130 3.3963 39 1 6.5360 7.0432 2.9877 40 1 5.3139 5.9148 2.3545 41 1 8.9915 5.1733 2.4671 42 1 8.8620 6.9293 2.2064 43 1 12.4588 6.2463 1.8300 44 1 3.2284 3.6640 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299719413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = -30.116311 kcal Electronic energy + Delta-G solvation = -21401.771247 eV Core-core repulsion = 18318.680058 eV Total energy + Delta-G solvation = -3083.091188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23418 -38.30959 -36.48584 -33.42500 -32.19127 -32.00326 -29.99304 -28.94660 -27.85483 -27.11177 -24.37088 -23.14503 -22.49969 -22.26487 -20.13217 -19.51910 -17.81699 -16.28776 -16.21721 -16.06327 -15.89425 -14.89122 -14.74239 -14.27947 -13.94507 -13.58611 -13.41995 -13.32400 -12.89988 -12.77549 -12.57283 -12.31913 -12.02359 -11.77712 -11.69959 -11.57374 -11.45700 -11.27435 -11.12117 -10.88416 -10.84553 -10.53745 -10.48252 -10.29644 -9.94575 -9.24388 -8.91993 -8.74013 -8.21253 -8.12404 -7.54376 -5.83223 -3.80149 1.36751 1.54662 3.05223 3.40988 3.48450 3.53481 3.83768 4.60647 4.62201 4.62925 4.77288 4.83298 4.93435 4.93715 5.16501 5.20507 5.44140 5.46692 5.53988 5.55374 5.59709 5.69919 5.77146 5.81755 5.87182 5.94997 6.04300 6.06546 6.19649 6.31543 6.37104 6.51566 6.57136 6.68327 6.72744 6.80535 6.85704 7.09980 7.39312 7.62680 7.75145 8.07661 8.11837 8.23134 8.65878 9.25738 9.80836 11.29069 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.003556 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.373239 B = 7873.080024 C = 8305.879153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.122 3.878 5 C -0.215 4.215 6 C -0.084 4.084 7 C -0.132 4.132 8 C -0.040 4.040 9 C 0.123 3.877 10 H 0.044 0.956 11 C -0.132 4.132 12 N -0.655 5.655 13 C 0.089 3.911 14 H 0.065 0.935 15 C -0.180 4.180 16 C 0.033 3.967 17 C -0.483 4.483 18 H 0.060 0.940 19 C 0.048 3.952 20 N -0.905 5.905 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.287 1.287 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.333 0.667 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.463 -11.672 -3.138 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.077 3.923 5 C -0.234 4.234 6 C -0.102 4.102 7 C -0.151 4.151 8 C -0.041 4.041 9 C 0.013 3.987 10 H 0.062 0.938 11 C -0.190 4.190 12 N -0.286 5.286 13 C -0.020 4.020 14 H 0.084 0.916 15 C -0.239 4.239 16 C -0.004 4.004 17 C -0.522 4.522 18 H 0.079 0.921 19 C -0.151 4.151 20 N -0.546 5.546 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.214 1.214 25 C -0.169 4.169 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.151 0.849 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.001 -11.440 -3.590 22.467 hybrid contribution 0.032 -0.319 -0.084 0.331 sum -18.968 -11.759 -3.674 22.618 Atomic orbital electron populations 1.21774 0.92918 1.02708 1.03503 1.22729 0.95684 0.82305 1.01276 1.86049 1.19394 1.28946 1.89017 1.18879 0.81915 0.94096 0.97377 1.21167 0.94567 0.97572 1.10102 1.20979 0.94071 0.97509 0.97613 1.21160 1.01229 0.91249 1.01449 1.19917 0.91860 0.96083 0.96244 1.20457 0.91744 0.90734 0.95794 0.93826 1.21769 1.00442 1.02704 0.94076 1.60720 1.37098 1.08245 1.22555 1.21837 0.98464 0.88365 0.93376 0.91635 1.22563 0.98972 1.02009 1.00393 1.19109 0.87719 0.96570 0.97025 1.21204 0.90798 1.45941 0.94267 0.92142 1.25015 0.98262 0.96260 0.95559 1.69980 1.09934 1.51429 1.23289 0.86603 0.80499 0.77244 0.84007 1.19825 1.21523 1.21396 1.20276 0.94689 0.94653 1.07238 0.90496 0.91552 0.91555 0.92198 0.92183 0.86067 0.85909 0.84270 0.91778 0.91727 0.93589 0.84853 0.93073 0.92511 0.94437 0.96538 0.96530 0.93487 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.47 5.46 37.16 0.20 0.67 16 3 O -0.32 -3.88 10.14 -19.43 -0.20 -4.08 16 4 C 0.12 1.60 6.69 -39.22 -0.26 1.34 16 5 C -0.22 -2.57 9.04 -39.43 -0.36 -2.92 16 6 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 7 C -0.13 -1.90 9.01 -39.56 -0.36 -2.26 16 8 C -0.04 -0.59 4.71 -104.64 -0.49 -1.08 16 9 C 0.12 1.94 2.63 -68.86 -0.18 1.75 16 10 H 0.04 0.67 6.97 -51.93 -0.36 0.31 16 11 C -0.13 -2.11 9.37 37.16 0.35 -1.76 16 12 N -0.66 -12.05 5.16 -100.95 -0.52 -12.57 16 13 C 0.09 1.78 2.34 -67.72 -0.16 1.62 16 14 H 0.07 1.34 7.11 -51.92 -0.37 0.97 16 15 C -0.18 -3.08 9.15 37.15 0.34 -2.74 16 16 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 17 C -0.48 -13.50 8.84 -34.44 -0.30 -13.80 16 18 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 19 C 0.05 1.39 5.46 -17.82 -0.10 1.29 16 20 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.15 -2.07 9.61 -39.43 -0.38 -2.45 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.14 2.14 7.72 -52.49 -0.41 1.74 16 34 H 0.06 1.10 7.43 -51.93 -0.39 0.71 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.33 5.92 7.74 -39.29 -0.30 5.62 16 38 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.57 7.43 -51.93 -0.39 0.18 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -30.75 358.15 -8.98 -39.72 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.53 Total: 2.85 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.84 Total: -21.67 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.22 Total: -39.37 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.20 Total: -4.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.75 -8.98 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299719413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.608 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds