Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47425 * 2 1 4 4 C 1.53003 * 109.46924 * 239.99434 * 2 1 3 5 5 N 1.46497 * 109.47078 * 65.00557 * 4 2 1 6 6 C 1.39669 * 119.99919 * 179.97438 * 5 4 2 7 7 C 1.39011 * 120.04098 * 0.02562 * 6 5 4 8 8 C 1.38149 * 120.06218 * 179.97438 * 7 6 5 9 9 C 1.38176 * 120.14087 * 359.72248 * 8 7 6 10 10 C 1.38918 * 120.07843 * 0.55432 * 9 8 7 11 11 O 1.35753 * 120.02696 * 179.71957 * 10 9 8 12 12 C 1.34835 * 116.99726 * 174.18640 * 11 10 9 13 13 H 1.08000 * 119.99927 * 5.06436 * 12 11 10 14 14 C 1.38651 * 119.99920 * 185.05751 * 12 11 10 15 15 N 1.31560 * 119.99556 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00143 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46948 * 89.99924 * 16 14 12 18 18 H 1.48501 * 109.47154 * 210.00012 * 16 14 12 19 19 H 1.48499 * 109.47084 * 330.00172 * 16 14 12 20 20 C 1.38749 * 120.03904 * 179.97438 * 6 5 4 21 21 C 1.52999 * 109.46846 * 119.99968 * 2 1 3 22 22 C 1.53001 * 109.47208 * 179.97438 * 21 2 1 23 23 C 1.53003 * 109.46923 * 299.99467 * 21 2 1 24 24 C 1.52996 * 109.47631 * 59.99852 * 21 2 1 25 25 H 1.09000 * 109.47053 * 300.00234 * 1 2 3 26 26 H 1.09001 * 109.46919 * 60.00146 * 1 2 3 27 27 H 1.09006 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47340 * 305.00351 * 4 2 1 29 29 H 1.09006 * 109.47195 * 185.00225 * 4 2 1 30 30 H 0.96998 * 120.00224 * 359.97438 * 5 4 2 31 31 H 1.07992 * 119.96556 * 359.95867 * 7 6 5 32 32 H 1.07993 * 119.92970 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.95764 * 180.29755 * 9 8 7 34 34 H 0.97003 * 119.99934 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.07271 * 359.97438 * 20 6 5 36 36 H 1.08998 * 109.47031 * 59.99457 * 22 21 2 37 37 H 1.09001 * 109.47281 * 179.97438 * 22 21 2 38 38 H 1.09000 * 109.46874 * 299.99910 * 22 21 2 39 39 H 1.09005 * 109.47045 * 60.00654 * 23 21 2 40 40 H 1.09001 * 109.46980 * 180.02562 * 23 21 2 41 41 H 1.08994 * 109.47531 * 300.00080 * 23 21 2 42 42 H 1.09001 * 109.47386 * 59.99487 * 24 21 2 43 43 H 1.09001 * 109.47502 * 179.97438 * 24 21 2 44 44 H 1.09005 * 109.47125 * 299.99829 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0089 -0.4297 -3.7103 7 6 2.7309 -1.6104 -3.8410 8 6 3.0833 -2.0708 -5.0950 9 6 2.7147 -1.3629 -6.2229 10 6 1.9981 -0.1793 -6.0988 11 8 1.6414 0.5183 -7.2074 12 6 0.8457 1.5915 -7.0255 13 1 0.5883 1.9098 -6.0261 14 6 0.3580 2.2867 -8.1216 15 7 -0.4179 3.3341 -7.9441 16 14 0.8027 1.7359 -9.8503 17 1 -0.2063 0.7595 -10.3336 18 1 0.8249 2.9135 -10.7547 19 1 2.1431 1.0968 -9.8367 20 6 1.6419 0.2859 -4.8409 21 6 2.0399 -0.7212 1.2493 22 6 3.5699 -0.7219 1.2490 23 6 1.5300 0.0001 2.4985 24 6 1.5299 -2.1637 1.2494 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7199 -1.2951 29 1 3.1263 -0.7997 -1.2056 30 1 1.1484 0.8589 -2.3519 31 1 3.0168 -2.1680 -2.9615 32 1 3.6439 -2.9885 -5.1941 33 1 2.9876 -1.7281 -7.2020 34 1 -0.7595 3.8203 -8.7109 35 1 1.0799 1.2029 -4.7422 36 1 3.9336 0.3056 1.2487 37 1 3.9332 -1.2353 2.1393 38 1 3.9329 -1.2360 0.3591 39 1 0.4399 0.0001 2.4985 40 1 1.8936 -0.5134 3.3885 41 1 1.8933 1.0277 2.4985 42 1 1.8932 -2.6776 0.3594 43 1 1.8936 -2.6777 2.1392 44 1 0.4399 -2.1637 1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302370898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -20.727389 kcal Electronic energy + Delta-G solvation = -21485.757560 eV Core-core repulsion = 18403.073506 eV Total energy + Delta-G solvation = -3082.684054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49886 -38.82682 -36.91045 -34.50715 -32.28662 -31.25874 -29.37582 -28.52874 -27.61352 -27.43306 -25.31555 -25.11300 -22.53401 -21.68117 -20.35468 -18.53283 -17.75803 -17.39454 -15.83886 -15.62014 -15.17641 -14.93832 -14.59083 -14.30143 -14.11913 -13.78107 -13.72777 -13.43496 -13.15328 -12.93092 -12.53217 -12.18696 -12.17247 -12.14307 -12.03181 -11.91389 -11.86302 -11.35221 -11.25210 -10.89875 -10.80945 -10.65487 -10.58708 -10.48591 -10.38695 -10.15232 -9.37510 -9.35667 -8.77119 -7.41612 -6.78184 -6.35112 -4.01708 2.34185 2.51971 3.26682 3.30327 3.45770 3.81030 4.29860 4.50981 4.54288 4.59735 4.67931 4.96340 4.98856 5.11678 5.19431 5.19876 5.34014 5.42262 5.45501 5.53466 5.63216 5.66843 5.71747 5.73787 5.74620 5.83293 5.86461 5.93839 5.96251 5.98564 6.10788 6.19504 6.23925 6.33985 6.36656 6.56585 6.62913 7.02179 7.27277 7.32709 7.57943 7.85986 7.98436 8.11449 8.25322 9.01230 9.66328 10.72916 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.003581 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.780754 B = 7817.256149 C = 8557.647837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 H 0.074 0.926 4 C 0.133 3.867 5 N -0.752 5.752 6 C 0.250 3.750 7 C -0.272 4.272 8 C -0.041 4.041 9 C -0.239 4.239 10 C 0.196 3.804 11 O -0.219 6.219 12 C -0.386 4.386 13 H 0.105 0.895 14 C 0.062 3.938 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.259 1.259 20 C -0.292 4.292 21 C -0.060 4.060 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.395 0.605 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.278 0.722 35 H 0.130 0.870 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.509 -8.576 18.280 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.093 0.907 4 C 0.008 3.992 5 N -0.384 5.384 6 C 0.148 3.852 7 C -0.295 4.295 8 C -0.060 4.060 9 C -0.260 4.260 10 C 0.143 3.857 11 O -0.124 6.124 12 C -0.461 4.461 13 H 0.122 0.878 14 C -0.141 4.141 15 N -0.522 5.522 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.183 1.183 20 C -0.316 4.316 21 C -0.061 4.061 22 C -0.204 4.204 23 C -0.200 4.200 24 C -0.205 4.205 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.507 -8.556 18.069 20.494 hybrid contribution -0.185 0.343 -0.607 0.722 sum 4.322 -8.213 17.462 19.775 Atomic orbital electron populations 1.21957 0.94803 1.02286 1.01834 1.21362 0.96349 0.99800 0.93616 0.90726 1.21388 0.98983 0.95069 0.83750 1.44602 1.63160 1.28154 1.02449 1.17492 0.91523 0.91965 0.84235 1.20125 1.12415 0.99900 0.97097 1.20369 0.96574 0.97481 0.91571 1.20018 1.10276 0.97114 0.98566 1.18797 0.91278 0.89718 0.85893 1.83582 1.60459 1.39064 1.29286 1.20756 1.25523 1.03176 0.96688 0.87760 1.24458 0.95159 0.95040 0.99423 1.69652 1.32195 1.18161 1.32224 0.86188 0.80300 0.78192 0.82269 1.19951 1.20913 1.18329 1.20615 1.14685 1.05353 0.90912 1.20472 0.95518 0.95590 0.94502 1.21973 0.94567 1.01954 1.01895 1.21922 1.01266 1.00112 0.96673 1.22005 1.01348 0.95292 1.01805 0.92435 0.92356 0.92224 0.92576 0.92500 0.77073 0.87779 0.87112 0.86995 0.91205 0.85273 0.92628 0.92758 0.92071 0.92269 0.92794 0.92719 0.92211 0.92876 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.36 37.16 0.31 -1.16 16 2 C -0.09 -0.90 1.79 -90.62 -0.16 -1.06 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.13 1.58 3.58 -4.04 -0.01 1.57 16 5 N -0.75 -11.43 5.46 -58.65 -0.32 -11.75 16 6 C 0.25 4.71 6.65 -83.81 -0.56 4.16 16 7 C -0.27 -4.81 9.31 -39.33 -0.37 -5.17 16 8 C -0.04 -0.73 10.03 -39.64 -0.40 -1.13 16 9 C -0.24 -4.98 9.99 -39.35 -0.39 -5.37 16 10 C 0.20 4.71 6.64 -39.14 -0.26 4.45 16 11 O -0.22 -5.96 8.58 0.03 0.00 -5.96 16 12 C -0.39 -11.12 9.95 30.89 0.31 -10.81 16 13 H 0.11 3.07 5.43 -52.49 -0.29 2.79 16 14 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 15 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 16 Si 0.90 22.13 28.62 -169.99 -4.86 17.26 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.29 -6.53 9.01 -39.20 -0.35 -6.89 16 21 C -0.06 -0.49 0.57 -154.51 -0.09 -0.58 16 22 C -0.15 -1.19 8.13 37.16 0.30 -0.89 16 23 C -0.14 -1.06 8.12 37.16 0.30 -0.76 16 24 C -0.15 -1.17 7.77 37.16 0.29 -0.89 16 25 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 26 H 0.06 0.64 7.18 -51.93 -0.37 0.26 16 27 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 28 H 0.06 0.68 6.51 -51.93 -0.34 0.35 16 29 H 0.06 0.69 5.98 -51.93 -0.31 0.38 16 30 H 0.39 5.79 7.66 -40.82 -0.31 5.48 16 31 H 0.10 1.58 6.72 -52.49 -0.35 1.23 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.13 3.04 5.64 -52.48 -0.30 2.75 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 39 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -29.89 340.33 -7.25 -37.14 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.79 Total: 6.21 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.18 Total: -22.87 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.45 Total: -36.91 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: 0.00 Total: -5.96 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.89 -7.25 -37.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302370898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.415 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds