Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47425 * 2 1 4 4 C 1.53003 * 109.46924 * 239.99434 * 2 1 3 5 5 N 1.46497 * 109.47078 * 65.00557 * 4 2 1 6 6 C 1.39669 * 119.99919 * 179.97438 * 5 4 2 7 7 C 1.39011 * 120.04098 * 0.02562 * 6 5 4 8 8 C 1.38149 * 120.06218 * 179.97438 * 7 6 5 9 9 C 1.38176 * 120.14087 * 359.72248 * 8 7 6 10 10 C 1.38918 * 120.07843 * 0.55432 * 9 8 7 11 11 O 1.35753 * 120.02696 * 179.71957 * 10 9 8 12 12 C 1.34835 * 116.99726 * 174.18640 * 11 10 9 13 13 H 1.08000 * 119.99927 * 5.06436 * 12 11 10 14 14 C 1.38651 * 119.99920 * 185.05751 * 12 11 10 15 15 N 1.31560 * 119.99556 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00143 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46948 * 89.99924 * 16 14 12 18 18 H 1.48501 * 109.47154 * 210.00012 * 16 14 12 19 19 H 1.48499 * 109.47084 * 330.00172 * 16 14 12 20 20 C 1.38749 * 120.03904 * 179.97438 * 6 5 4 21 21 C 1.52999 * 109.46846 * 119.99968 * 2 1 3 22 22 C 1.53001 * 109.47208 * 179.97438 * 21 2 1 23 23 C 1.53003 * 109.46923 * 299.99467 * 21 2 1 24 24 C 1.52996 * 109.47631 * 59.99852 * 21 2 1 25 25 H 1.09000 * 109.47053 * 300.00234 * 1 2 3 26 26 H 1.09001 * 109.46919 * 60.00146 * 1 2 3 27 27 H 1.09006 * 109.47511 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47340 * 305.00351 * 4 2 1 29 29 H 1.09006 * 109.47195 * 185.00225 * 4 2 1 30 30 H 0.96998 * 120.00224 * 359.97438 * 5 4 2 31 31 H 1.07992 * 119.96556 * 359.95867 * 7 6 5 32 32 H 1.07993 * 119.92970 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.95764 * 180.29755 * 9 8 7 34 34 H 0.97003 * 119.99934 * 180.02562 * 15 14 12 35 35 H 1.08006 * 120.07271 * 359.97438 * 20 6 5 36 36 H 1.08998 * 109.47031 * 59.99457 * 22 21 2 37 37 H 1.09001 * 109.47281 * 179.97438 * 22 21 2 38 38 H 1.09000 * 109.46874 * 299.99910 * 22 21 2 39 39 H 1.09005 * 109.47045 * 60.00654 * 23 21 2 40 40 H 1.09001 * 109.46980 * 180.02562 * 23 21 2 41 41 H 1.08994 * 109.47531 * 300.00080 * 23 21 2 42 42 H 1.09001 * 109.47386 * 59.99487 * 24 21 2 43 43 H 1.09001 * 109.47502 * 179.97438 * 24 21 2 44 44 H 1.09005 * 109.47125 * 299.99829 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0089 -0.4297 -3.7103 7 6 2.7309 -1.6104 -3.8410 8 6 3.0833 -2.0708 -5.0950 9 6 2.7147 -1.3629 -6.2229 10 6 1.9981 -0.1793 -6.0988 11 8 1.6414 0.5183 -7.2074 12 6 0.8457 1.5915 -7.0255 13 1 0.5883 1.9098 -6.0261 14 6 0.3580 2.2867 -8.1216 15 7 -0.4179 3.3341 -7.9441 16 14 0.8027 1.7359 -9.8503 17 1 -0.2063 0.7595 -10.3336 18 1 0.8249 2.9135 -10.7547 19 1 2.1431 1.0968 -9.8367 20 6 1.6419 0.2859 -4.8409 21 6 2.0399 -0.7212 1.2493 22 6 3.5699 -0.7219 1.2490 23 6 1.5300 0.0001 2.4985 24 6 1.5299 -2.1637 1.2494 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6053 -1.7199 -1.2951 29 1 3.1263 -0.7997 -1.2056 30 1 1.1484 0.8589 -2.3519 31 1 3.0168 -2.1680 -2.9615 32 1 3.6439 -2.9885 -5.1941 33 1 2.9876 -1.7281 -7.2020 34 1 -0.7595 3.8203 -8.7109 35 1 1.0799 1.2029 -4.7422 36 1 3.9336 0.3056 1.2487 37 1 3.9332 -1.2353 2.1393 38 1 3.9329 -1.2360 0.3591 39 1 0.4399 0.0001 2.4985 40 1 1.8936 -0.5134 3.3885 41 1 1.8933 1.0277 2.4985 42 1 1.8932 -2.6776 0.3594 43 1 1.8936 -2.6777 2.1392 44 1 0.4399 -2.1637 1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302370898.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = -37.546823 kcal Electronic energy + Delta-G solvation = -21486.486905 eV Core-core repulsion = 18403.073506 eV Total energy + Delta-G solvation = -3083.413400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92584 -39.99832 -38.49434 -35.82551 -34.38086 -32.29208 -30.86185 -29.82659 -28.50387 -28.14668 -27.12065 -26.26136 -23.57468 -23.25869 -21.86882 -19.89324 -19.36917 -18.84085 -17.27509 -16.85010 -16.59231 -16.09778 -15.82595 -15.65427 -15.49807 -15.32597 -14.96720 -14.61156 -14.43092 -14.18971 -14.07255 -13.78840 -13.48375 -13.05312 -12.85423 -12.75231 -12.65610 -12.62463 -12.55539 -12.22557 -12.17530 -12.02591 -11.99152 -11.41765 -11.35629 -11.25205 -11.16775 -10.95701 -10.62477 -9.17169 -8.48510 -8.23489 -6.20985 0.73985 0.89050 1.31646 1.36721 1.53217 2.29642 2.56406 2.82889 3.15437 3.26600 3.74033 3.80144 3.86923 4.20757 4.21403 4.34286 4.39678 4.48227 4.57316 4.59217 4.69098 4.75102 4.81419 4.85148 4.88670 4.93420 4.99990 5.03390 5.05785 5.10599 5.12543 5.19016 5.24275 5.26361 5.42220 5.45907 5.48471 5.56724 5.62308 5.75615 5.84854 5.91055 6.18437 6.60740 6.83013 6.86589 7.63735 8.63363 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.003581 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.780754 B = 7817.256149 C = 8557.647837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.069 0.931 4 C 0.131 3.869 5 N -0.746 5.746 6 C 0.252 3.748 7 C -0.258 4.258 8 C -0.026 4.026 9 C -0.252 4.252 10 C 0.159 3.841 11 O -0.245 6.245 12 C -0.397 4.397 13 H 0.078 0.922 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.971 3.029 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.263 1.263 20 C -0.314 4.314 21 C -0.056 4.056 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.395 0.605 31 H 0.140 0.860 32 H 0.158 0.842 33 H 0.122 0.878 34 H 0.284 0.716 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -11.106 19.819 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 H 0.087 0.913 4 C 0.007 3.993 5 N -0.376 5.376 6 C 0.147 3.853 7 C -0.281 4.281 8 C -0.044 4.044 9 C -0.273 4.273 10 C 0.109 3.891 11 O -0.153 6.153 12 C -0.473 4.473 13 H 0.095 0.905 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.192 1.192 19 H -0.187 1.187 20 C -0.338 4.338 21 C -0.057 4.057 22 C -0.204 4.204 23 C -0.199 4.199 24 C -0.204 4.204 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.158 0.842 32 H 0.175 0.825 33 H 0.140 0.860 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.946 -11.103 19.677 23.363 hybrid contribution -0.553 0.982 -0.752 1.355 sum 5.393 -10.121 18.924 22.128 Atomic orbital electron populations 1.21948 0.94836 1.02375 1.01598 1.21322 0.96243 0.99509 0.93446 0.91263 1.21615 0.99487 0.95125 0.83036 1.44812 1.62166 1.28256 1.02328 1.17620 0.91050 0.92091 0.84534 1.20599 1.10174 0.98771 0.98556 1.20886 0.95085 0.98155 0.90322 1.20315 1.10218 0.96282 1.00436 1.19394 0.92828 0.91113 0.85738 1.83523 1.61667 1.39292 1.30792 1.20692 1.26349 1.04270 0.95982 0.90478 1.25287 0.95142 0.95107 1.03385 1.69736 1.33810 1.19516 1.33603 0.85207 0.79712 0.78293 0.77433 1.19050 1.19154 1.18743 1.20577 1.15764 1.05293 0.92186 1.20445 0.95667 0.95731 0.93813 1.21976 0.94304 1.01853 1.02267 1.21912 1.01355 1.00035 0.96576 1.22005 1.01335 0.94917 1.02171 0.91187 0.94141 0.91942 0.91936 0.91773 0.77092 0.84180 0.82453 0.86036 0.90656 0.88042 0.92997 0.91646 0.92445 0.92146 0.91810 0.92905 0.92564 0.91813 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.36 71.98 0.60 -2.13 16 2 C -0.09 -1.53 1.79 -10.79 -0.02 -1.55 16 3 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.13 2.81 3.58 86.38 0.31 3.12 16 5 N -0.75 -22.07 5.46 -339.46 -1.85 -23.92 16 6 C 0.25 9.28 6.65 38.20 0.25 9.53 16 7 C -0.26 -8.21 9.31 22.43 0.21 -8.01 16 8 C -0.03 -0.83 10.03 22.23 0.22 -0.61 16 9 C -0.25 -10.20 9.99 22.42 0.22 -9.98 16 10 C 0.16 7.87 6.64 22.56 0.15 8.02 16 11 O -0.25 -13.94 8.58 -22.82 -0.20 -14.13 16 12 C -0.40 -24.23 9.95 67.92 0.68 -23.56 16 13 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 14 C 0.01 0.51 5.49 84.83 0.47 0.98 16 15 N -0.93 -56.55 13.96 21.61 0.30 -56.25 16 16 Si 0.97 46.73 28.62 68.60 1.96 48.69 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 20 C -0.31 -14.63 9.01 22.52 0.20 -14.43 16 21 C -0.06 -0.78 0.57 -52.18 -0.03 -0.81 16 22 C -0.15 -2.00 8.13 71.98 0.59 -1.41 16 23 C -0.14 -1.76 8.12 71.98 0.58 -1.17 16 24 C -0.15 -1.92 7.77 71.98 0.56 -1.36 16 25 H 0.07 1.09 6.43 -2.39 -0.02 1.08 16 26 H 0.04 0.87 7.18 -2.39 -0.02 0.85 16 27 H 0.06 1.10 6.43 -2.38 -0.02 1.08 16 28 H 0.06 1.32 6.51 -2.39 -0.02 1.30 16 29 H 0.06 1.34 5.98 -2.38 -0.01 1.33 16 30 H 0.39 11.78 7.66 -92.71 -0.71 11.07 16 31 H 0.14 3.51 6.72 -2.91 -0.02 3.49 16 32 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.10 5.22 5.64 -2.91 -0.02 5.20 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.82 6.32 -2.39 -0.02 0.80 16 39 H 0.06 0.74 6.43 -2.38 -0.02 0.72 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.77 6.54 -2.39 -0.02 0.76 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.78 6.43 -2.38 -0.02 0.76 16 Total: -1.00 -67.74 340.33 5.50 -62.25 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.29 Total: 26.72 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 4.99 Total: -43.35 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -1.55 Total: -80.17 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.20 Total: -14.13 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.96 Total: 48.69 kcal Total: -67.74 5.50 -62.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302370898.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.699 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds