Wall clock time and date at job start Mon Mar 30 2020 01:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46988 * 2 1 4 4 C 1.53007 * 109.47117 * 239.99793 * 2 1 3 5 5 N 1.46497 * 109.46854 * 65.00210 * 4 2 1 6 6 C 1.39784 * 120.00271 * 180.02562 * 5 4 2 7 7 C 1.38943 * 120.00943 * 179.97438 * 6 5 4 8 8 C 1.38014 * 119.99201 * 180.23154 * 7 6 5 9 9 C 1.38893 * 120.00778 * 359.49313 * 8 7 6 10 10 O 1.35796 * 119.99965 * 180.23531 * 9 8 7 11 11 C 1.34809 * 117.00833 * 174.73324 * 10 9 8 12 12 H 1.08003 * 119.99228 * 5.05017 * 11 10 9 13 13 C 1.38614 * 120.00609 * 185.05631 * 11 10 9 14 14 N 1.31577 * 120.00552 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99808 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47318 * 89.99693 * 15 13 11 17 17 H 1.48503 * 109.47031 * 210.00098 * 15 13 11 18 18 H 1.48503 * 109.46909 * 330.00027 * 15 13 11 19 19 C 1.38900 * 120.00885 * 0.50251 * 9 8 7 20 20 C 1.38006 * 120.00954 * 359.75620 * 19 9 8 21 21 C 1.52994 * 109.47329 * 120.00074 * 2 1 3 22 22 C 1.52999 * 109.47329 * 180.02562 * 21 2 1 23 23 C 1.53001 * 109.47079 * 299.99944 * 21 2 1 24 24 C 1.53006 * 109.47297 * 59.99534 * 21 2 1 25 25 H 1.09004 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47182 * 300.00246 * 1 2 3 27 27 H 1.09004 * 109.46937 * 59.99938 * 1 2 3 28 28 H 1.08996 * 109.46809 * 305.00337 * 4 2 1 29 29 H 1.08994 * 109.46951 * 184.99789 * 4 2 1 30 30 H 0.97000 * 120.00235 * 359.97438 * 5 4 2 31 31 H 1.08000 * 120.00621 * 359.95602 * 7 6 5 32 32 H 1.08008 * 119.99318 * 179.72823 * 8 7 6 33 33 H 0.96994 * 120.00456 * 180.02562 * 14 13 11 34 34 H 1.08001 * 119.99605 * 179.72547 * 19 9 8 35 35 H 1.07997 * 120.00422 * 179.97438 * 20 19 9 36 36 H 1.08997 * 109.46988 * 59.99926 * 22 21 2 37 37 H 1.09004 * 109.46937 * 179.97438 * 22 21 2 38 38 H 1.08994 * 109.47182 * 299.99681 * 22 21 2 39 39 H 1.09002 * 109.46964 * 59.99779 * 23 21 2 40 40 H 1.09004 * 109.47285 * 179.97438 * 23 21 2 41 41 H 1.08997 * 109.47196 * 300.00048 * 23 21 2 42 42 H 1.09002 * 109.46698 * 60.00225 * 24 21 2 43 43 H 1.08996 * 109.47153 * 179.97438 * 24 21 2 44 44 H 1.08994 * 109.46994 * 300.00520 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6525 0.0353 -2.4424 6 6 2.0083 -0.4303 -3.7115 7 6 1.6403 0.2869 -4.8432 8 6 1.9877 -0.1756 -6.0962 9 6 2.7141 -1.3523 -6.2256 10 8 3.0599 -1.8047 -7.4584 11 6 3.8562 -2.8913 -7.5107 12 1 4.1229 -3.4094 -6.6013 13 6 4.3328 -3.3434 -8.7313 14 7 5.1104 -4.4036 -8.7822 15 14 3.8710 -2.4474 -10.3041 16 1 4.8753 -1.3901 -10.5846 17 1 3.8397 -3.4123 -11.4324 18 1 2.5309 -1.8276 -10.1454 19 6 3.0821 -2.0695 -5.0944 20 6 2.7305 -1.6103 -3.8414 21 6 2.0400 -0.7212 1.2492 22 6 3.5700 -0.7207 1.2495 23 6 1.5300 0.0000 2.4984 24 6 1.5300 -2.1638 1.2493 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6053 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2056 30 1 1.1483 0.8590 -2.3518 31 1 1.0787 1.2039 -4.7425 32 1 1.6979 0.3796 -6.9762 33 1 5.4441 -4.7197 -9.6363 34 1 3.6431 -2.9868 -5.1955 35 1 3.0163 -2.1681 -2.9619 36 1 3.9329 0.3071 1.2497 37 1 3.9333 -1.2341 2.1397 38 1 3.9337 -1.2342 0.3596 39 1 0.4400 0.0000 2.4984 40 1 1.8930 -0.5141 3.3884 41 1 1.8933 1.0277 2.4984 42 1 1.8933 -2.6776 0.3593 43 1 1.8937 -2.6777 2.1390 44 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310674743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:28 Heat of formation + Delta-G solvation = -34.761800 kcal Electronic energy + Delta-G solvation = -21310.827484 eV Core-core repulsion = 18227.534853 eV Total energy + Delta-G solvation = -3083.292632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87246 -39.96900 -38.52107 -35.59412 -34.29429 -31.98174 -31.80556 -29.59242 -28.35842 -28.16545 -26.93166 -26.13010 -23.97280 -22.91444 -21.95005 -19.91044 -19.29487 -18.87750 -17.63099 -16.91661 -16.28681 -15.94517 -15.89211 -15.51449 -15.35513 -15.32403 -14.95481 -14.48118 -14.43006 -14.13356 -14.03209 -13.69856 -13.48966 -13.13676 -12.99481 -12.82105 -12.75707 -12.66175 -12.55994 -12.38076 -12.20036 -12.01251 -11.91901 -11.33834 -11.27975 -11.17916 -11.13208 -10.94265 -10.23554 -9.79593 -8.43123 -7.96003 -6.10944 0.56837 0.89392 1.33576 1.38583 1.55321 2.33297 2.66524 2.85216 3.17649 3.31070 3.78203 3.82968 3.89447 4.10671 4.16821 4.24128 4.36598 4.49976 4.57058 4.60715 4.69558 4.76839 4.80795 4.83734 4.85519 4.93331 4.99139 5.06701 5.10030 5.12687 5.18486 5.20964 5.24315 5.29511 5.33768 5.43542 5.48033 5.57882 5.63578 5.65005 5.83798 5.88097 6.14294 6.60023 6.92652 7.07530 7.73064 8.69452 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034869 B = 0.003184 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.819065 B = 8791.414836 C = 9316.450854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.079 0.921 4 C 0.130 3.870 5 N -0.742 5.742 6 C 0.160 3.840 7 C -0.144 4.144 8 C -0.140 4.140 9 C 0.065 3.935 10 O -0.254 6.254 11 C -0.391 4.391 12 H 0.076 0.924 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.973 3.027 16 H -0.267 1.267 17 H -0.269 1.269 18 H -0.263 1.263 19 C -0.188 4.188 20 C -0.156 4.156 21 C -0.058 4.058 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.149 4.149 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.404 0.596 31 H 0.154 0.846 32 H 0.131 0.869 33 H 0.282 0.718 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.058 0.942 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 11.524 21.975 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.097 0.903 4 C 0.005 3.995 5 N -0.376 5.376 6 C 0.058 3.942 7 C -0.166 4.166 8 C -0.160 4.160 9 C 0.016 3.984 10 O -0.163 6.163 11 C -0.468 4.468 12 H 0.093 0.907 13 C -0.193 4.193 14 N -0.574 5.574 15 Si 0.795 3.205 16 H -0.192 1.192 17 H -0.194 1.194 18 H -0.187 1.187 19 C -0.208 4.208 20 C -0.179 4.179 21 C -0.059 4.059 22 C -0.205 4.205 23 C -0.196 4.196 24 C -0.206 4.206 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.240 0.760 31 H 0.172 0.828 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.288 11.338 21.791 26.261 hybrid contribution 0.302 -0.280 -0.746 0.853 sum -8.986 11.058 21.045 25.415 Atomic orbital electron populations 1.21938 0.94237 1.02200 1.02195 1.21278 0.96628 0.99569 0.92567 0.90302 1.21477 0.98754 0.95065 0.84164 1.44355 1.63575 1.28560 1.01152 1.17601 0.96679 0.93490 0.86386 1.20506 1.04934 1.01692 0.89459 1.20303 1.02206 0.94680 0.98773 1.19461 0.98955 0.95376 0.84575 1.83495 1.62804 1.44199 1.25801 1.20663 1.26143 1.03685 0.96300 0.90675 1.25264 0.95451 0.96888 1.01716 1.69749 1.34552 1.24954 1.28190 0.85186 0.79660 0.78318 0.77327 1.19187 1.19416 1.18685 1.21052 1.05301 1.01508 0.92935 1.20437 1.03711 0.97723 0.96022 1.20466 0.95272 0.95515 0.94646 1.21983 0.94844 1.01950 1.01763 1.21894 1.01490 1.00103 0.96161 1.22014 1.01496 0.95411 1.01658 0.92701 0.91080 0.92737 0.93337 0.93238 0.75967 0.82827 0.85128 0.90842 0.87748 0.85763 0.92435 0.92131 0.93239 0.91788 0.92340 0.92393 0.93378 0.92275 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.36 71.98 0.60 -1.33 16 2 C -0.08 -1.17 1.79 -10.79 -0.02 -1.19 16 3 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.13 2.60 3.58 86.38 0.31 2.91 16 5 N -0.74 -16.84 5.46 -339.26 -1.85 -18.69 16 6 C 0.16 5.01 6.66 38.21 0.25 5.26 16 7 C -0.14 -4.50 9.89 22.39 0.22 -4.28 16 8 C -0.14 -5.48 9.98 22.37 0.22 -5.26 16 9 C 0.06 3.15 6.65 22.59 0.15 3.30 16 10 O -0.25 -14.35 8.58 -23.04 -0.20 -14.55 16 11 C -0.39 -23.96 9.94 67.91 0.68 -23.29 16 12 H 0.08 4.84 5.43 -2.91 -0.02 4.82 16 13 C 0.00 0.21 5.49 84.82 0.47 0.68 16 14 N -0.93 -57.63 13.96 21.61 0.30 -57.33 16 15 Si 0.97 47.07 28.62 68.60 1.96 49.04 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 19 C -0.19 -8.71 9.16 22.37 0.20 -8.51 16 20 C -0.16 -5.79 9.30 22.39 0.21 -5.58 16 21 C -0.06 -0.77 0.57 -52.18 -0.03 -0.80 16 22 C -0.15 -2.14 8.13 71.98 0.59 -1.56 16 23 C -0.14 -1.48 8.12 71.98 0.58 -0.89 16 24 C -0.15 -2.10 7.77 71.98 0.56 -1.54 16 25 H 0.05 0.78 6.43 -2.38 -0.02 0.77 16 26 H 0.07 0.74 6.43 -2.39 -0.02 0.72 16 27 H 0.05 0.73 7.18 -2.38 -0.02 0.71 16 28 H 0.05 1.07 6.51 -2.39 -0.02 1.06 16 29 H 0.05 1.10 5.98 -2.39 -0.01 1.08 16 30 H 0.40 7.28 7.67 -92.71 -0.71 6.57 16 31 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 33 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 34 H 0.10 5.33 5.63 -2.91 -0.02 5.31 16 35 H 0.12 4.10 6.73 -2.91 -0.02 4.08 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 0.83 6.32 -2.39 -0.02 0.82 16 39 H 0.06 0.62 6.43 -2.39 -0.02 0.60 16 40 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.05 0.80 6.54 -2.39 -0.02 0.78 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 0.83 6.43 -2.39 -0.02 0.82 16 Total: -1.00 -68.14 340.33 5.49 -62.65 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.29 Total: 20.94 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.99 Total: -42.06 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.55 Total: -76.02 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.20 Total: -14.55 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.96 Total: 49.04 kcal Total: -68.14 5.49 -62.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310674743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.890 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds