Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 26.72196 * 3 2 1 5 5 N 1.46894 * 109.47515 * 179.97438 * 4 3 2 6 6 C 1.47010 * 111.00135 * 66.04551 * 5 4 3 7 7 C 1.53018 * 109.47281 * 177.04695 * 6 5 4 8 8 N 1.47001 * 109.48948 * 58.15147 * 7 6 5 9 9 C 1.46894 * 111.00266 * 177.05591 * 8 7 6 10 10 C 1.50699 * 109.47462 * 66.04295 * 9 8 7 11 11 H 1.08003 * 119.99676 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00150 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00060 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00081 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46808 * 59.99815 * 14 12 10 16 16 H 1.48492 * 109.47058 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46744 * 299.99808 * 14 12 10 18 18 C 1.46894 * 110.74790 * 300.82960 * 8 7 6 19 19 H 1.09006 * 109.46266 * 299.64559 * 18 8 7 20 20 C 1.52946 * 109.80888 * 179.44377 * 18 8 7 21 21 C 1.53046 * 109.34216 * 179.80077 * 20 18 8 22 22 C 1.52969 * 109.57221 * 59.91135 * 21 20 18 23 23 C 1.53037 * 109.57685 * 300.25506 * 22 21 20 24 24 C 1.46878 * 111.00209 * 302.43577 * 5 4 3 25 25 H 1.08998 * 109.45807 * 63.44557 * 24 5 4 26 26 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 27 27 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 29 29 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 30 30 H 1.09001 * 109.46800 * 297.05114 * 6 5 4 31 31 H 1.09008 * 109.47022 * 57.04620 * 6 5 4 32 32 H 1.09004 * 109.46991 * 178.15214 * 7 6 5 33 33 H 1.08998 * 109.47158 * 298.14218 * 7 6 5 34 34 H 1.09003 * 109.46794 * 186.04658 * 9 8 7 35 35 H 1.08999 * 109.47126 * 306.04359 * 9 8 7 36 36 H 0.97001 * 119.99868 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.49231 * 299.77915 * 20 18 8 38 38 H 1.08999 * 109.49301 * 59.86263 * 20 18 8 39 39 H 1.09004 * 109.46842 * 299.87097 * 21 20 18 40 40 H 1.09004 * 109.42674 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.45403 * 180.21550 * 22 21 20 42 42 H 1.09000 * 109.45406 * 60.28433 * 22 21 20 43 43 H 1.09009 * 109.48832 * 299.92193 * 23 22 21 44 44 H 1.08995 * 109.49748 * 179.84631 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2875 -0.6486 5 7 4.5876 -1.2866 -0.6492 6 6 5.1151 -1.3524 0.7215 7 6 6.6429 -1.4238 0.6772 8 7 7.1685 -0.2487 -0.0328 9 6 8.6374 -0.2478 -0.0341 10 6 9.1398 -1.4126 -0.8477 11 1 8.4379 -2.0859 -1.3172 12 6 10.4953 -1.6180 -0.9935 13 7 11.3499 -0.7972 -0.4230 14 14 11.1180 -3.0614 -2.0027 15 1 10.6212 -2.9415 -3.3969 16 1 12.6029 -3.0605 -2.0039 17 1 10.6248 -4.3300 -1.4088 18 6 6.6408 -0.1892 -1.4024 19 1 6.9400 -1.0853 -1.9461 20 6 7.1896 1.0472 -2.1160 21 6 6.6374 1.0960 -3.5425 22 6 5.1100 1.1659 -3.4987 23 6 4.5607 -0.0674 -2.7781 24 6 5.1130 -0.1091 -1.3526 25 1 4.8139 0.7945 -0.8215 26 1 2.9710 0.8600 -0.5639 27 1 2.9714 0.0596 1.0260 28 1 2.7557 -2.1468 -0.0848 29 1 2.7554 -1.3465 -1.6746 30 1 4.8086 -0.4627 1.2717 31 1 4.7241 -2.2400 1.2190 32 1 7.0355 -1.4394 1.6940 33 1 6.9493 -2.3304 0.1556 34 1 8.9997 0.6832 -0.4701 35 1 9.0017 -0.3356 0.9895 36 1 12.3036 -0.9419 -0.5253 37 1 6.8844 1.9439 -1.5767 38 1 8.2779 0.9949 -2.1492 39 1 6.9445 0.1999 -4.0818 40 1 7.0274 1.9770 -4.0523 41 1 4.7186 1.1967 -4.5155 42 1 4.8029 2.0651 -2.9645 43 1 4.8658 -0.9670 -3.3129 44 1 3.4725 -0.0149 -2.7452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332687623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = 7.531760 kcal Electronic energy + Delta-G solvation = -22957.702019 eV Core-core repulsion = 19908.536125 eV Total energy + Delta-G solvation = -3049.165894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.26804 -38.19494 -37.01836 -36.91965 -34.52867 -32.16265 -31.01513 -30.65619 -29.11026 -26.89391 -24.45901 -24.35275 -23.83492 -21.40022 -20.78613 -20.55429 -18.66964 -18.05711 -17.21786 -16.80196 -16.29289 -15.91830 -15.68837 -15.33345 -15.27065 -15.04222 -14.52362 -14.30318 -14.23137 -13.92960 -13.86245 -13.51761 -13.19798 -13.04790 -12.88225 -12.76073 -12.65500 -12.55939 -12.24062 -12.07615 -12.04811 -11.90063 -11.77022 -11.68155 -11.55150 -11.21741 -10.91768 -10.60865 -10.49329 -9.15668 -8.89965 -8.10031 -6.28135 1.37869 1.38023 1.46145 1.80426 1.84561 2.39742 2.85112 3.14576 3.24520 3.39429 3.88864 4.04039 4.10246 4.16831 4.23230 4.41638 4.43668 4.46737 4.51183 4.59702 4.65402 4.71940 4.73053 4.76221 4.95728 5.01205 5.09259 5.14451 5.21115 5.25963 5.29269 5.34771 5.37259 5.40155 5.45017 5.47600 5.58700 5.69332 5.82248 6.12910 6.20570 6.22955 6.40605 6.64416 6.68260 6.93820 7.42627 8.91197 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022594 B = 0.005213 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.977581 B = 5369.600509 C = 5917.100099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.244 3.756 3 C -0.063 4.063 4 C 0.063 3.937 5 N -0.540 5.540 6 C 0.063 3.937 7 C 0.060 3.940 8 N -0.536 5.536 9 C 0.201 3.799 10 C -0.543 4.543 11 H 0.051 0.949 12 C 0.015 3.985 13 N -0.926 5.926 14 Si 0.947 3.053 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.104 3.896 19 H 0.017 0.983 20 C -0.105 4.105 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.110 4.110 24 C 0.095 3.905 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.015 0.985 34 H 0.013 0.987 35 H -0.002 1.002 36 H 0.263 0.737 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 2.444 -2.614 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.073 4.073 3 C -0.105 4.105 4 C -0.066 4.066 5 N -0.262 5.262 6 C -0.065 4.065 7 C -0.069 4.069 8 N -0.259 5.259 9 C 0.075 3.925 10 C -0.583 4.583 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.566 5.566 14 Si 0.772 3.228 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.198 1.198 18 C -0.005 4.005 19 H 0.035 0.965 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.013 4.013 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.016 0.984 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.387 2.464 -2.568 16.769 hybrid contribution 1.825 -0.866 -0.260 2.037 sum -14.562 1.598 -2.829 14.920 Atomic orbital electron populations 1.81270 1.14729 1.10694 1.10992 1.29391 0.95208 0.91407 0.91297 1.20265 0.80186 1.03534 1.06486 1.22258 0.86234 0.95576 1.02567 1.62339 1.06783 1.40973 1.16129 1.22222 0.92800 1.02228 0.89202 1.21991 0.95102 0.91917 0.97875 1.62675 1.08667 1.39031 1.15515 1.19377 0.83693 0.94931 0.94533 1.21884 0.91840 1.12578 1.31955 0.93104 1.25694 0.97364 0.98639 0.96735 1.70047 1.02410 1.38768 1.45407 0.85781 0.77173 0.80256 0.79540 1.19718 1.20840 1.19778 1.21403 0.93666 0.96553 0.88857 0.96541 1.21463 0.99283 0.97426 0.96143 1.21508 0.97037 1.01364 0.95361 1.21496 0.93793 0.98197 1.01226 1.21642 1.00865 0.98607 0.93662 1.21718 0.92576 0.91699 0.95312 0.91899 0.85789 0.85725 0.88976 0.88840 0.92306 0.88683 0.91923 0.96652 0.96921 0.98387 0.92808 0.91674 0.94659 0.93618 0.91315 0.90284 0.90725 0.92586 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.09 18.54 20.01 0.37 -11.72 16 2 C 0.24 4.25 15.43 89.44 1.38 5.63 16 3 C -0.06 -0.76 4.97 28.79 0.14 -0.61 16 4 C 0.06 0.93 4.79 86.30 0.41 1.34 16 5 N -0.54 -12.16 4.75 -870.71 -4.14 -16.30 16 6 C 0.06 1.51 5.27 86.29 0.45 1.96 16 7 C 0.06 2.13 5.33 86.29 0.46 2.59 16 8 N -0.54 -21.35 4.75 -875.21 -4.16 -25.51 16 9 C 0.20 10.24 4.61 85.56 0.39 10.63 16 10 C -0.54 -29.58 7.66 25.60 0.20 -29.39 16 11 H 0.05 2.79 5.79 -2.91 -0.02 2.78 16 12 C 0.01 0.83 5.46 84.65 0.46 1.29 16 13 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 14 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.10 3.68 1.39 44.92 0.06 3.75 16 19 H 0.02 0.72 6.45 -2.38 -0.02 0.70 16 20 C -0.10 -3.59 4.89 30.59 0.15 -3.44 16 21 C -0.11 -3.07 5.92 30.60 0.18 -2.88 16 22 C -0.11 -2.12 5.92 30.60 0.18 -1.94 16 23 C -0.11 -2.20 4.88 30.59 0.15 -2.05 16 24 C 0.10 2.33 1.23 44.92 0.06 2.38 16 25 H 0.06 1.39 6.46 -2.39 -0.02 1.38 16 26 H 0.12 1.30 6.43 -2.39 -0.02 1.28 16 27 H 0.12 1.26 6.62 -2.39 -0.02 1.25 16 28 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 29 H 0.09 1.28 6.41 -2.39 -0.02 1.27 16 30 H 0.06 1.21 6.61 -2.39 -0.02 1.19 16 31 H 0.09 1.89 8.11 -2.38 -0.02 1.87 16 32 H 0.06 2.25 8.11 -2.39 -0.02 2.23 16 33 H 0.02 0.63 6.94 -2.39 -0.02 0.62 16 34 H 0.01 0.70 6.41 -2.39 -0.02 0.69 16 35 H 0.00 -0.11 8.10 -2.39 -0.02 -0.13 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.03 1.51 6.42 -2.39 -0.02 1.50 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.09 1.30 6.42 -2.39 -0.02 1.28 16 Total: -1.00 -66.19 330.48 0.05 -66.14 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.98 Total: 6.51 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.68 Total: -10.74 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -7.64 Total: -107.87 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.19 0.05 -66.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332687623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.668 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds