Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30838 * 125.89657 * 2 1 4 4 N 1.40090 * 108.20110 * 180.25659 * 3 2 1 5 5 C 1.46498 * 126.03483 * 179.74137 * 4 3 2 6 6 C 1.34941 * 107.92787 * 359.72419 * 4 3 2 7 7 C 1.50704 * 126.13072 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74629 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04082 * 180.02562 * 8 6 4 10 10 N 1.46906 * 109.47109 * 90.00079 * 9 8 6 11 11 C 1.46851 * 111.00022 * 45.78950 * 10 9 8 12 12 C 1.53032 * 109.52182 * 185.84191 * 11 10 9 13 13 C 1.53116 * 109.27928 * 300.81716 * 12 11 10 14 14 C 1.50697 * 109.52486 * 177.55838 * 13 12 11 15 15 H 1.07998 * 120.00164 * 240.31793 * 14 13 12 16 16 C 1.37885 * 119.99723 * 60.32070 * 14 13 12 17 17 N 1.31508 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00163 * 18 16 14 20 20 H 1.48503 * 109.47013 * 209.99980 * 18 16 14 21 21 H 1.48504 * 109.47693 * 329.99913 * 18 16 14 22 22 C 1.53124 * 109.15766 * 57.65616 * 13 12 11 23 23 C 1.46844 * 111.00112 * 169.99735 * 10 9 8 24 24 H 1.08993 * 109.47093 * 270.20712 * 1 2 3 25 25 H 1.09001 * 109.46685 * 30.21153 * 1 2 3 26 26 H 1.09002 * 109.46848 * 150.20403 * 1 2 3 27 27 H 1.09003 * 109.47643 * 269.97978 * 5 4 3 28 28 H 1.09005 * 109.47363 * 29.97860 * 5 4 3 29 29 H 1.09000 * 109.47279 * 149.97771 * 5 4 3 30 30 H 1.09003 * 109.46986 * 270.02312 * 7 6 4 31 31 H 1.09005 * 109.46935 * 30.02067 * 7 6 4 32 32 H 1.08992 * 109.47271 * 150.02327 * 7 6 4 33 33 H 1.08992 * 109.46894 * 329.99815 * 9 8 6 34 34 H 1.09004 * 109.47113 * 209.99965 * 9 8 6 35 35 H 1.09005 * 109.46004 * 305.85371 * 11 10 9 36 36 H 1.08992 * 109.46301 * 65.82351 * 11 10 9 37 37 H 1.09001 * 109.50447 * 180.88041 * 12 11 10 38 38 H 1.08998 * 109.50386 * 60.76043 * 12 11 10 39 39 H 1.08999 * 109.52527 * 297.75337 * 13 12 11 40 40 H 0.97003 * 119.99365 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.50478 * 182.40666 * 22 13 12 42 42 H 1.09000 * 109.53517 * 62.30938 * 22 13 12 43 43 H 1.09004 * 109.46405 * 294.17948 * 23 10 9 44 44 H 1.09010 * 109.46082 * 54.15482 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 6 4.7899 1.5008 -0.0133 6 6 3.6143 -0.7153 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3272 -1.1330 0.0046 9 6 1.8600 -2.5657 0.0105 10 7 1.7156 -3.0280 1.3975 11 6 1.0108 -2.0313 2.2138 12 6 1.0070 -2.4789 3.6771 13 6 0.3132 -3.8394 3.7878 14 6 0.3593 -4.3134 5.2175 15 1 0.8553 -5.2408 5.4633 16 6 -0.2320 -3.5632 6.2119 17 7 -0.8364 -2.4343 5.9124 18 14 -0.1755 -4.1511 7.9840 19 1 1.0409 -3.6141 8.6452 20 1 -1.3828 -3.6712 8.7034 21 1 -0.1399 -5.6355 8.0123 22 6 1.0376 -4.8473 2.8910 23 6 1.0405 -4.3309 1.4504 24 1 -0.3633 0.0037 1.0276 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3633 -0.8918 -0.5107 27 1 5.0780 1.7137 -1.0428 28 1 4.5588 2.4343 0.4998 29 1 5.6118 0.9992 0.4976 30 1 5.1239 -1.8137 -1.0373 31 1 5.6539 -1.0901 0.5003 32 1 4.6103 -2.5320 0.5081 33 1 2.5906 -3.1882 -0.5057 34 1 0.8984 -2.6365 -0.4979 35 1 1.5168 -1.0694 2.1295 36 1 -0.0159 -1.9334 1.8612 37 1 0.4702 -1.7467 4.2803 38 1 2.0332 -2.5636 4.0345 39 1 -0.7244 -3.7464 3.4671 40 1 -1.2520 -1.9063 6.6121 41 1 0.5227 -5.8072 2.9324 42 1 2.0643 -4.9699 3.2358 43 1 0.0136 -4.2224 1.1013 44 1 1.5681 -5.0396 0.8118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334222618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = 66.610306 kcal Electronic energy + Delta-G solvation = -22527.827580 eV Core-core repulsion = 19481.223524 eV Total energy + Delta-G solvation = -3046.604056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30850 -38.02103 -34.50508 -33.71481 -32.28578 -30.83701 -29.80652 -29.27788 -27.81817 -26.09003 -25.15826 -23.56349 -21.93207 -21.25549 -19.42549 -19.14234 -18.38972 -16.38369 -16.24750 -15.82280 -14.94196 -14.47562 -14.32138 -14.05994 -13.53442 -13.45829 -13.30961 -13.12934 -12.81494 -12.55760 -12.49844 -12.34093 -12.22704 -11.90028 -11.79853 -11.56729 -11.46969 -11.21774 -10.89061 -10.64469 -10.36942 -10.23972 -10.08832 -9.87533 -9.33104 -8.89148 -8.86949 -8.60027 -8.21811 -8.14437 -7.49466 -5.90286 -3.95311 1.99586 2.60177 2.88034 3.35278 3.41832 3.45009 4.50496 4.52357 4.72999 4.77239 5.02303 5.06069 5.13541 5.30158 5.39724 5.42821 5.48648 5.51561 5.60247 5.79156 5.86700 5.90832 5.95880 6.03258 6.07714 6.19966 6.29167 6.33714 6.46774 6.50833 6.74459 6.77475 6.87584 6.96184 7.16979 7.18260 7.28256 7.56985 7.73824 7.85834 7.90358 7.95154 8.14796 8.26681 8.56667 9.08504 9.68543 11.15755 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.004591 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.923373 B = 6097.121961 C = 6314.084620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.088 3.912 3 N -0.304 5.304 4 N -0.381 5.381 5 C 0.105 3.895 6 C 0.098 3.902 7 C -0.090 4.090 8 C -0.225 4.225 9 C 0.132 3.868 10 N -0.531 5.531 11 C 0.061 3.939 12 C -0.103 4.103 13 C 0.048 3.952 14 C -0.509 4.509 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.105 4.105 23 C 0.060 3.940 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.020 0.980 40 H 0.258 0.742 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.023 0.977 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 4.272 -14.425 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 N -0.126 5.126 4 N -0.163 5.163 5 C -0.036 4.036 6 C -0.029 4.029 7 C -0.149 4.149 8 C -0.236 4.236 9 C 0.004 3.996 10 N -0.256 5.256 11 C -0.066 4.066 12 C -0.142 4.142 13 C 0.030 3.970 14 C -0.548 4.548 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.143 4.143 23 C -0.068 4.068 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.752 5.728 -14.140 18.107 hybrid contribution -0.697 -0.834 0.724 1.306 sum 9.055 4.894 -13.416 16.910 Atomic orbital electron populations 1.20293 0.86959 1.02662 1.03606 1.22171 0.96711 0.90377 0.98560 1.77274 0.86161 1.22494 1.26695 1.48208 1.05396 1.04163 1.58580 1.21739 0.84188 0.94939 1.02767 1.20780 0.96972 0.84206 1.00969 1.20457 0.92615 0.99140 1.02661 1.19555 0.91185 0.95920 1.16921 1.20299 0.98696 0.89800 0.90806 1.62140 1.51983 1.03290 1.08173 1.22307 0.94446 0.94015 0.95825 1.21649 0.99917 1.01142 0.91471 1.18679 0.94097 0.90739 0.93521 1.21225 1.34710 1.06648 0.92177 0.92851 1.24962 0.95312 0.95033 0.98692 1.69886 1.36896 1.13710 1.32582 0.86664 0.77363 0.78982 0.85380 1.20820 1.21369 1.20010 1.21661 1.00930 0.98881 0.92834 1.22110 0.95361 0.90308 0.98988 0.89812 0.91277 0.90729 0.91237 0.89547 0.89751 0.90761 0.91544 0.88622 0.91157 0.94951 0.92393 0.96120 0.89289 0.94246 0.96215 0.93192 0.93357 0.92629 0.95903 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.23 36.01 0.33 -0.74 16 2 C 0.09 1.42 5.88 -82.40 -0.48 0.94 16 3 N -0.30 -5.04 12.58 33.67 0.42 -4.62 16 4 N -0.38 -5.36 4.01 -63.88 -0.26 -5.62 16 5 C 0.11 0.96 11.27 59.85 0.67 1.64 16 6 C 0.10 1.37 6.93 -82.27 -0.57 0.80 16 7 C -0.09 -0.94 9.72 36.01 0.35 -0.59 16 8 C -0.22 -3.50 4.18 -105.05 -0.44 -3.94 16 9 C 0.13 2.01 5.19 -4.97 -0.03 1.99 16 10 N -0.53 -9.62 4.80 -236.11 -1.13 -10.75 16 11 C 0.06 1.26 4.04 -3.83 -0.02 1.24 16 12 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 13 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 14 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 17 N -0.89 -25.88 11.37 55.43 0.63 -25.25 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 23 C 0.06 1.09 5.42 -3.84 -0.02 1.07 16 24 H 0.08 1.26 7.16 -51.93 -0.37 0.89 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.96 7.25 -51.93 -0.38 0.58 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.59 7.05 -51.93 -0.37 0.23 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.58 7.08 -51.93 -0.37 0.21 16 32 H 0.10 1.09 7.77 -51.93 -0.40 0.69 16 33 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 34 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 35 H 0.06 1.21 5.67 -51.93 -0.29 0.92 16 36 H 0.02 0.43 7.00 -51.93 -0.36 0.07 16 37 H 0.09 2.44 6.17 -51.93 -0.32 2.11 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.88 8.12 -51.92 -0.42 0.45 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -31.73 339.53 -8.71 -40.45 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.41 Total: -1.41 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.06 Total: -14.53 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.34 Total: -46.24 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.73 -8.71 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334222618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.055 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds