Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30838 * 125.89657 * 2 1 4 4 N 1.40090 * 108.20110 * 180.25659 * 3 2 1 5 5 C 1.46498 * 126.03483 * 179.74137 * 4 3 2 6 6 C 1.34941 * 107.92787 * 359.72419 * 4 3 2 7 7 C 1.50704 * 126.13072 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74629 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04082 * 180.02562 * 8 6 4 10 10 N 1.46906 * 109.47109 * 90.00079 * 9 8 6 11 11 C 1.46851 * 111.00022 * 45.78950 * 10 9 8 12 12 C 1.53032 * 109.52182 * 185.84191 * 11 10 9 13 13 C 1.53116 * 109.27928 * 300.81716 * 12 11 10 14 14 C 1.50697 * 109.52486 * 177.55838 * 13 12 11 15 15 H 1.07998 * 120.00164 * 240.31793 * 14 13 12 16 16 C 1.37885 * 119.99723 * 60.32070 * 14 13 12 17 17 N 1.31508 * 119.99571 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00163 * 18 16 14 20 20 H 1.48503 * 109.47013 * 209.99980 * 18 16 14 21 21 H 1.48504 * 109.47693 * 329.99913 * 18 16 14 22 22 C 1.53124 * 109.15766 * 57.65616 * 13 12 11 23 23 C 1.46844 * 111.00112 * 169.99735 * 10 9 8 24 24 H 1.08993 * 109.47093 * 270.20712 * 1 2 3 25 25 H 1.09001 * 109.46685 * 30.21153 * 1 2 3 26 26 H 1.09002 * 109.46848 * 150.20403 * 1 2 3 27 27 H 1.09003 * 109.47643 * 269.97978 * 5 4 3 28 28 H 1.09005 * 109.47363 * 29.97860 * 5 4 3 29 29 H 1.09000 * 109.47279 * 149.97771 * 5 4 3 30 30 H 1.09003 * 109.46986 * 270.02312 * 7 6 4 31 31 H 1.09005 * 109.46935 * 30.02067 * 7 6 4 32 32 H 1.08992 * 109.47271 * 150.02327 * 7 6 4 33 33 H 1.08992 * 109.46894 * 329.99815 * 9 8 6 34 34 H 1.09004 * 109.47113 * 209.99965 * 9 8 6 35 35 H 1.09005 * 109.46004 * 305.85371 * 11 10 9 36 36 H 1.08992 * 109.46301 * 65.82351 * 11 10 9 37 37 H 1.09001 * 109.50447 * 180.88041 * 12 11 10 38 38 H 1.08998 * 109.50386 * 60.76043 * 12 11 10 39 39 H 1.08999 * 109.52527 * 297.75337 * 13 12 11 40 40 H 0.97003 * 119.99365 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.50478 * 182.40666 * 22 13 12 42 42 H 1.09000 * 109.53517 * 62.30938 * 22 13 12 43 43 H 1.09004 * 109.46405 * 294.17948 * 23 10 9 44 44 H 1.09010 * 109.46082 * 54.15482 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 6 4.7899 1.5008 -0.0133 6 6 3.6143 -0.7153 -0.0033 7 6 4.8350 -1.5990 -0.0084 8 6 2.3272 -1.1330 0.0046 9 6 1.8600 -2.5657 0.0105 10 7 1.7156 -3.0280 1.3975 11 6 1.0108 -2.0313 2.2138 12 6 1.0070 -2.4789 3.6771 13 6 0.3132 -3.8394 3.7878 14 6 0.3593 -4.3134 5.2175 15 1 0.8553 -5.2408 5.4633 16 6 -0.2320 -3.5632 6.2119 17 7 -0.8364 -2.4343 5.9124 18 14 -0.1755 -4.1511 7.9840 19 1 1.0409 -3.6141 8.6452 20 1 -1.3828 -3.6712 8.7034 21 1 -0.1399 -5.6355 8.0123 22 6 1.0376 -4.8473 2.8910 23 6 1.0405 -4.3309 1.4504 24 1 -0.3633 0.0037 1.0276 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3633 -0.8918 -0.5107 27 1 5.0780 1.7137 -1.0428 28 1 4.5588 2.4343 0.4998 29 1 5.6118 0.9992 0.4976 30 1 5.1239 -1.8137 -1.0373 31 1 5.6539 -1.0901 0.5003 32 1 4.6103 -2.5320 0.5081 33 1 2.5906 -3.1882 -0.5057 34 1 0.8984 -2.6365 -0.4979 35 1 1.5168 -1.0694 2.1295 36 1 -0.0159 -1.9334 1.8612 37 1 0.4702 -1.7467 4.2803 38 1 2.0332 -2.5636 4.0345 39 1 -0.7244 -3.7464 3.4671 40 1 -1.2520 -1.9063 6.6121 41 1 0.5227 -5.8072 2.9324 42 1 2.0643 -4.9699 3.2358 43 1 0.0136 -4.2224 1.1013 44 1 1.5681 -5.0396 0.8118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334222618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = 46.533901 kcal Electronic energy + Delta-G solvation = -22528.698158 eV Core-core repulsion = 19481.223524 eV Total energy + Delta-G solvation = -3047.474635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.39473 -39.61559 -36.05460 -34.97549 -33.81152 -32.31668 -31.42961 -30.39796 -29.11256 -27.46523 -26.49178 -24.97967 -23.62501 -22.89588 -20.51515 -20.45642 -19.98818 -18.41804 -17.30926 -17.11679 -16.53034 -16.06028 -15.77927 -15.24836 -14.86003 -14.68398 -14.58156 -14.45490 -14.12027 -13.95883 -13.84788 -13.62951 -13.36643 -13.02185 -12.95157 -12.88875 -12.81449 -12.74369 -12.62465 -12.46822 -12.13097 -11.94374 -11.79080 -11.43818 -11.23270 -10.75595 -10.60228 -10.34434 -9.94792 -9.33414 -8.89038 -8.05448 -6.18901 0.93630 1.41320 1.41714 1.52127 1.66893 1.73259 2.45083 3.20972 3.33055 3.58910 3.80172 4.13193 4.25935 4.28996 4.33529 4.35995 4.40431 4.46413 4.51135 4.59175 4.65003 4.68432 4.71538 4.80597 4.84015 4.89782 4.94543 5.00599 5.06057 5.14643 5.16498 5.21673 5.30449 5.37803 5.40036 5.62587 5.66164 5.75261 6.04351 6.08366 6.22785 6.38241 6.44090 6.47841 6.80161 6.93745 7.48726 8.98911 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.004591 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.923373 B = 6097.121961 C = 6314.084620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.072 3.928 3 N -0.339 5.339 4 N -0.383 5.383 5 C 0.094 3.906 6 C 0.102 3.898 7 C -0.087 4.087 8 C -0.254 4.254 9 C 0.139 3.861 10 N -0.533 5.533 11 C 0.084 3.916 12 C -0.093 4.093 13 C 0.045 3.955 14 C -0.532 4.532 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.952 3.048 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.098 4.098 23 C 0.066 3.934 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.053 0.947 38 H 0.023 0.977 39 H -0.012 1.012 40 H 0.258 0.742 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.021 0.979 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 3.378 -15.579 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 N -0.163 5.163 4 N -0.165 5.165 5 C -0.046 4.046 6 C -0.027 4.027 7 C -0.145 4.145 8 C -0.265 4.265 9 C 0.011 3.989 10 N -0.258 5.258 11 C -0.044 4.044 12 C -0.132 4.132 13 C 0.026 3.974 14 C -0.570 4.570 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.778 3.222 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.136 4.136 23 C -0.062 4.062 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.006 0.994 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.704 4.839 -15.309 19.869 hybrid contribution -1.239 -0.508 1.067 1.712 sum 10.465 4.331 -14.243 18.197 Atomic orbital electron populations 1.20275 0.86516 1.03750 1.02688 1.22445 0.97383 0.90811 0.98763 1.77191 0.87698 1.23341 1.28031 1.48612 1.05546 1.04911 1.57433 1.22130 0.83186 0.94666 1.04592 1.21371 0.97801 0.84609 0.98938 1.20571 0.91467 0.98024 1.04460 1.19720 0.92001 0.95864 1.18945 1.20333 0.99678 0.90204 0.88697 1.62089 1.51084 1.02636 1.10028 1.21897 0.94356 0.94450 0.93665 1.21410 0.97961 0.99980 0.93828 1.18653 0.92882 0.92361 0.93472 1.21620 1.34792 1.06729 0.93824 0.92987 1.25756 0.94985 0.95124 1.02872 1.70040 1.37454 1.14660 1.33734 0.85650 0.77406 0.78850 0.80314 1.20335 1.21009 1.19079 1.21527 0.99880 0.98001 0.94191 1.22068 0.96022 0.90914 0.97202 0.91620 0.90134 0.89736 0.89082 0.89612 0.87254 0.88162 0.89651 0.89450 0.88562 0.94529 0.92832 0.96850 0.92866 0.95830 0.99434 0.93259 0.92755 0.93015 0.96095 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.10 9.23 71.24 0.66 -1.45 16 2 C 0.07 2.29 5.88 43.10 0.25 2.55 16 3 N -0.34 -11.16 12.58 -47.38 -0.60 -11.75 16 4 N -0.38 -10.14 4.01 -356.03 -1.43 -11.56 16 5 C 0.09 1.49 11.27 127.77 1.44 2.93 16 6 C 0.10 2.62 6.93 41.41 0.29 2.91 16 7 C -0.09 -1.49 9.72 71.24 0.69 -0.80 16 8 C -0.25 -7.56 4.18 -20.14 -0.08 -7.64 16 9 C 0.14 3.90 5.19 85.56 0.44 4.35 16 10 N -0.53 -18.58 4.80 -900.92 -4.32 -22.90 16 11 C 0.08 3.51 4.04 86.32 0.35 3.86 16 12 C -0.09 -4.74 5.12 30.64 0.16 -4.58 16 13 C 0.04 2.33 2.16 -11.46 -0.02 2.31 16 14 C -0.53 -30.27 8.56 25.60 0.22 -30.05 16 15 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 16 C 0.01 0.61 5.31 84.66 0.45 1.06 16 17 N -0.92 -55.02 11.37 21.45 0.24 -54.78 16 18 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 C -0.10 -4.11 5.32 30.65 0.16 -3.95 16 23 C 0.07 2.24 5.42 86.32 0.47 2.71 16 24 H 0.07 2.08 7.16 -2.39 -0.02 2.07 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.16 7.25 -2.39 -0.02 2.14 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.11 1.17 7.05 -2.39 -0.02 1.15 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.14 7.08 -2.38 -0.02 1.12 16 32 H 0.09 1.70 7.77 -2.39 -0.02 1.68 16 33 H 0.10 2.23 7.77 -2.39 -0.02 2.21 16 34 H 0.04 1.01 7.18 -2.38 -0.02 0.99 16 35 H 0.05 2.28 5.67 -2.38 -0.01 2.27 16 36 H 0.01 0.57 7.00 -2.39 -0.02 0.56 16 37 H 0.05 3.06 6.17 -2.39 -0.01 3.05 16 38 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.09 2.56 8.12 -2.38 -0.02 2.54 16 Total: -1.00 -70.44 339.53 2.36 -68.08 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.97 Total: 11.86 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 5.47 Total: -25.80 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -6.10 Total: -101.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.44 2.36 -68.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334222618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.613 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds