Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38615 * 120.44958 * 2 1 4 4 C 1.38575 * 118.39923 * 180.02562 * 3 2 1 5 5 N 1.32348 * 119.10460 * 359.97438 * 4 3 2 6 6 C 1.31774 * 120.81889 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.12048 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47032 * 89.99707 * 7 6 5 9 9 C 1.46898 * 110.99808 * 192.37623 * 8 7 6 10 10 C 1.50706 * 109.46976 * 190.95550 * 9 8 7 11 11 H 1.08005 * 120.00115 * 4.78745 * 10 9 8 12 12 C 1.37878 * 119.99996 * 184.78427 * 10 9 8 13 13 N 1.31518 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46935 * 60.00053 * 14 12 10 16 16 H 1.48500 * 109.47209 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47121 * 300.00418 * 14 12 10 18 18 C 1.46907 * 110.99724 * 68.42612 * 8 7 6 19 19 C 1.52994 * 109.47371 * 50.95951 * 18 8 7 20 20 C 1.53006 * 109.47284 * 34.74100 * 19 18 8 21 21 C 1.53001 * 109.47339 * 154.74220 * 19 18 8 22 22 C 1.52997 * 109.47154 * 274.74502 * 19 18 8 23 23 N 1.31811 * 121.75862 * 359.71639 * 6 5 4 24 24 H 1.08995 * 109.47122 * 89.99940 * 1 2 3 25 25 H 1.09001 * 109.46718 * 209.99721 * 1 2 3 26 26 H 1.08993 * 109.47074 * 329.99723 * 1 2 3 27 27 H 1.07999 * 120.79978 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.44594 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47011 * 210.00174 * 7 6 5 30 30 H 1.09004 * 109.47134 * 330.00079 * 7 6 5 31 31 H 1.09004 * 109.47032 * 310.95179 * 9 8 7 32 32 H 1.09001 * 109.47403 * 70.95436 * 9 8 7 33 33 H 0.96995 * 119.99777 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46772 * 170.96047 * 18 8 7 35 35 H 1.09001 * 109.46620 * 290.96027 * 18 8 7 36 36 H 1.09003 * 109.47079 * 60.53502 * 20 19 18 37 37 H 1.08999 * 109.47223 * 180.53774 * 20 19 18 38 38 H 1.09005 * 109.47211 * 300.53921 * 20 19 18 39 39 H 1.09000 * 109.47109 * 59.99909 * 21 19 18 40 40 H 1.09004 * 109.47319 * 180.02562 * 21 19 18 41 41 H 1.09000 * 109.46878 * 299.99804 * 21 19 18 42 42 H 1.08998 * 109.47858 * 75.18383 * 22 19 18 43 43 H 1.09007 * 109.47346 * 195.18777 * 22 19 18 44 44 H 1.09002 * 109.46965 * 315.18063 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 -0.0005 5 7 4.1964 -0.0333 -0.0005 6 6 3.4956 -1.1492 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 7 4.4567 -2.9000 1.3837 9 6 5.4063 -4.0197 1.4329 10 6 5.4201 -4.6061 2.8211 11 1 4.7319 -4.2402 3.5688 12 6 6.3112 -5.6098 3.1367 13 7 7.1495 -6.0550 2.2264 14 14 6.3288 -6.3361 4.8577 15 1 5.0005 -6.9279 5.1587 16 1 7.3711 -7.3907 4.9393 17 1 6.6290 -5.2667 5.8433 18 6 3.1944 -3.2507 2.0486 19 6 2.4114 -4.2303 1.1723 20 6 3.3879 -5.1563 0.4443 21 6 1.4760 -5.0643 2.0501 22 6 1.5872 -3.4502 0.1462 23 7 2.1775 -1.1408 0.0050 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6901 2.1418 -0.0004 28 1 4.1746 2.0563 -0.0010 29 1 3.6149 -3.2170 -0.5149 30 1 5.1754 -2.3608 -0.5153 31 1 5.1031 -4.7849 0.7183 32 1 6.4041 -3.6613 1.1800 33 1 7.7761 -6.7613 2.4484 34 1 3.4078 -3.7149 3.0114 35 1 2.6026 -2.3485 2.2033 36 1 3.9686 -5.7190 1.1753 37 1 2.8305 -5.8479 -0.1873 38 1 4.0606 -4.5614 -0.1737 39 1 0.7803 -4.4047 2.5687 40 1 0.9184 -5.7626 1.4258 41 1 2.0632 -5.6201 2.7810 42 1 2.2443 -3.0756 -0.6387 43 1 0.8359 -4.1074 -0.2918 44 1 1.0941 -2.6117 0.6381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336727899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = 123.523231 kcal Electronic energy + Delta-G solvation = -23225.210611 eV Core-core repulsion = 20181.074484 eV Total energy + Delta-G solvation = -3044.136127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10412 -39.06131 -34.47044 -33.55594 -33.14498 -31.89932 -28.78021 -28.06609 -27.66764 -26.35116 -25.71500 -24.40278 -22.99644 -21.74752 -20.11009 -18.27315 -17.51021 -16.52120 -16.06703 -15.52215 -15.13177 -14.88258 -14.52267 -13.98587 -13.80951 -13.70182 -13.20908 -13.03533 -12.70959 -12.59049 -12.39760 -12.07384 -11.74835 -11.30862 -11.25832 -10.96626 -10.87854 -10.80944 -10.59244 -10.51655 -10.35117 -10.19042 -10.03477 -9.85682 -9.54302 -9.45046 -9.23876 -8.83494 -8.53068 -8.38540 -6.81581 -5.99543 -3.98510 1.09825 1.28338 3.34640 3.39265 3.41946 3.89780 4.13585 4.35294 4.46821 4.57531 5.05199 5.18717 5.22675 5.34750 5.38372 5.41512 5.54842 5.57773 5.63843 5.65706 5.80580 5.84463 6.08973 6.17384 6.26857 6.28696 6.33027 6.40661 6.57130 6.58364 6.66071 6.69237 6.81883 6.93983 7.06695 7.19905 7.27251 7.34573 7.48417 7.55884 7.81021 8.13400 8.30865 8.42965 8.62767 9.07220 9.63417 11.11397 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.005590 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.866449 B = 5007.760182 C = 5555.346096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.163 3.837 3 C -0.246 4.246 4 C 0.147 3.853 5 N -0.509 5.509 6 C 0.347 3.653 7 C 0.083 3.917 8 N -0.523 5.523 9 C 0.152 3.848 10 C -0.507 4.507 11 H 0.064 0.936 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.067 3.933 19 C -0.095 4.095 20 C -0.163 4.163 21 C -0.131 4.131 22 C -0.135 4.135 23 N -0.498 5.498 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 10.723 -5.891 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.016 3.984 3 C -0.268 4.268 4 C -0.019 4.019 5 N -0.223 5.223 6 C 0.080 3.920 7 C -0.046 4.046 8 N -0.247 5.247 9 C 0.028 3.972 10 C -0.546 4.546 11 H 0.082 0.918 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.061 4.061 19 C -0.097 4.097 20 C -0.219 4.219 21 C -0.189 4.189 22 C -0.192 4.192 23 N -0.214 5.214 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.041 0.959 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.161 10.117 -5.654 16.799 hybrid contribution -0.631 -0.058 0.625 0.890 sum -12.792 10.059 -5.029 17.033 Atomic orbital electron populations 1.20752 0.88403 1.03760 1.03255 1.21876 0.97566 0.88897 0.90066 1.22628 0.96746 1.00147 1.07326 1.23212 0.92019 0.96423 0.90288 1.68328 1.41774 0.98634 1.13554 1.23515 0.86279 0.94758 0.87427 1.21605 0.99243 0.88978 0.94737 1.62313 1.11250 1.40196 1.10919 1.20791 0.90494 0.87403 0.98514 1.21228 1.18552 1.18090 0.96693 0.91781 1.24926 0.95402 0.96964 0.96929 1.69944 1.21381 1.28621 1.33461 0.86670 0.77615 0.78758 0.85044 1.20320 1.21397 1.20328 1.22361 0.89060 0.95684 0.98985 1.21178 0.95999 0.96131 0.96408 1.22894 0.98579 0.99375 1.01086 1.21787 0.98703 0.99016 0.99426 1.22823 0.98970 0.98431 0.98989 1.69200 1.09614 1.27872 1.14730 0.90069 0.89964 0.90619 0.84408 0.82110 0.89059 0.89660 0.94049 0.95405 0.92955 0.88946 0.93776 0.88865 0.95292 0.91143 0.93784 0.93857 0.92445 0.91421 0.95883 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.22 36.01 0.37 -0.55 16 2 C 0.16 2.05 6.82 -82.24 -0.56 1.49 16 3 C -0.25 -2.77 9.86 -39.32 -0.39 -3.16 16 4 C 0.15 1.91 11.30 -17.20 -0.19 1.72 16 5 N -0.51 -8.74 10.33 -10.73 -0.11 -8.85 16 6 C 0.35 6.12 6.40 -157.19 -1.01 5.11 16 7 C 0.08 1.59 4.30 -4.97 -0.02 1.57 16 8 N -0.52 -11.46 4.83 -237.50 -1.15 -12.61 16 9 C 0.15 3.82 4.19 -4.97 -0.02 3.80 16 10 C -0.51 -13.71 7.51 -34.44 -0.26 -13.97 16 11 H 0.06 1.73 5.50 -52.48 -0.29 1.44 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 C 0.07 1.37 4.56 -3.82 -0.02 1.35 16 19 C -0.10 -1.72 0.77 -154.51 -0.12 -1.84 16 20 C -0.16 -3.20 6.17 37.16 0.23 -2.97 16 21 C -0.13 -2.20 8.29 37.16 0.31 -1.89 16 22 C -0.14 -2.17 6.48 37.16 0.24 -1.93 16 23 N -0.50 -7.75 4.38 -6.98 -0.03 -7.78 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.77 7.61 -51.93 -0.40 0.38 16 26 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 29 H 0.09 1.68 2.42 -51.93 -0.13 1.56 16 30 H 0.09 1.66 8.05 -51.93 -0.42 1.25 16 31 H 0.04 1.05 3.38 -54.70 -0.19 0.86 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.09 2.08 4.88 -51.93 -0.25 1.82 16 35 H 0.04 0.88 6.69 -51.93 -0.35 0.54 16 36 H 0.09 2.15 5.75 -51.93 -0.30 1.85 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 1.41 3.25 -51.93 -0.17 1.24 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 42 H 0.07 1.13 3.79 -51.93 -0.20 0.93 16 43 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 44 H 0.07 1.16 5.24 -51.93 -0.27 0.89 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -30.11 321.97 -8.56 -38.67 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.30 Total: 4.22 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.54 Total: -9.72 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.55 Total: -54.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.11 -8.56 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336727899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.194 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds