Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38615 * 120.44958 * 2 1 4 4 C 1.38575 * 118.39923 * 180.02562 * 3 2 1 5 5 N 1.32348 * 119.10460 * 359.97438 * 4 3 2 6 6 C 1.31774 * 120.81889 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.12048 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47032 * 89.99707 * 7 6 5 9 9 C 1.46898 * 110.99808 * 192.37623 * 8 7 6 10 10 C 1.50706 * 109.46976 * 190.95550 * 9 8 7 11 11 H 1.08005 * 120.00115 * 4.78745 * 10 9 8 12 12 C 1.37878 * 119.99996 * 184.78427 * 10 9 8 13 13 N 1.31518 * 119.99914 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46935 * 60.00053 * 14 12 10 16 16 H 1.48500 * 109.47209 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47121 * 300.00418 * 14 12 10 18 18 C 1.46907 * 110.99724 * 68.42612 * 8 7 6 19 19 C 1.52994 * 109.47371 * 50.95951 * 18 8 7 20 20 C 1.53006 * 109.47284 * 34.74100 * 19 18 8 21 21 C 1.53001 * 109.47339 * 154.74220 * 19 18 8 22 22 C 1.52997 * 109.47154 * 274.74502 * 19 18 8 23 23 N 1.31811 * 121.75862 * 359.71639 * 6 5 4 24 24 H 1.08995 * 109.47122 * 89.99940 * 1 2 3 25 25 H 1.09001 * 109.46718 * 209.99721 * 1 2 3 26 26 H 1.08993 * 109.47074 * 329.99723 * 1 2 3 27 27 H 1.07999 * 120.79978 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.44594 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.47011 * 210.00174 * 7 6 5 30 30 H 1.09004 * 109.47134 * 330.00079 * 7 6 5 31 31 H 1.09004 * 109.47032 * 310.95179 * 9 8 7 32 32 H 1.09001 * 109.47403 * 70.95436 * 9 8 7 33 33 H 0.96995 * 119.99777 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.46772 * 170.96047 * 18 8 7 35 35 H 1.09001 * 109.46620 * 290.96027 * 18 8 7 36 36 H 1.09003 * 109.47079 * 60.53502 * 20 19 18 37 37 H 1.08999 * 109.47223 * 180.53774 * 20 19 18 38 38 H 1.09005 * 109.47211 * 300.53921 * 20 19 18 39 39 H 1.09000 * 109.47109 * 59.99909 * 21 19 18 40 40 H 1.09004 * 109.47319 * 180.02562 * 21 19 18 41 41 H 1.09000 * 109.46878 * 299.99804 * 21 19 18 42 42 H 1.08998 * 109.47858 * 75.18383 * 22 19 18 43 43 H 1.09007 * 109.47346 * 195.18777 * 22 19 18 44 44 H 1.09002 * 109.46965 * 315.18063 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 -0.0005 5 7 4.1964 -0.0333 -0.0005 6 6 3.4956 -1.1492 -0.0005 7 6 4.2205 -2.4705 -0.0011 8 7 4.4567 -2.9000 1.3837 9 6 5.4063 -4.0197 1.4329 10 6 5.4201 -4.6061 2.8211 11 1 4.7319 -4.2402 3.5688 12 6 6.3112 -5.6098 3.1367 13 7 7.1495 -6.0550 2.2264 14 14 6.3288 -6.3361 4.8577 15 1 5.0005 -6.9279 5.1587 16 1 7.3711 -7.3907 4.9393 17 1 6.6290 -5.2667 5.8433 18 6 3.1944 -3.2507 2.0486 19 6 2.4114 -4.2303 1.1723 20 6 3.3879 -5.1563 0.4443 21 6 1.4760 -5.0643 2.0501 22 6 1.5872 -3.4502 0.1462 23 7 2.1775 -1.1408 0.0050 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6901 2.1418 -0.0004 28 1 4.1746 2.0563 -0.0010 29 1 3.6149 -3.2170 -0.5149 30 1 5.1754 -2.3608 -0.5153 31 1 5.1031 -4.7849 0.7183 32 1 6.4041 -3.6613 1.1800 33 1 7.7761 -6.7613 2.4484 34 1 3.4078 -3.7149 3.0114 35 1 2.6026 -2.3485 2.2033 36 1 3.9686 -5.7190 1.1753 37 1 2.8305 -5.8479 -0.1873 38 1 4.0606 -4.5614 -0.1737 39 1 0.7803 -4.4047 2.5687 40 1 0.9184 -5.7626 1.4258 41 1 2.0632 -5.6201 2.7810 42 1 2.2443 -3.0756 -0.6387 43 1 0.8359 -4.1074 -0.2918 44 1 1.0941 -2.6117 0.6381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336727899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = 104.727318 kcal Electronic energy + Delta-G solvation = -23226.025663 eV Core-core repulsion = 20181.074484 eV Total energy + Delta-G solvation = -3044.951179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28695 -40.57200 -35.67640 -35.15725 -34.60410 -33.47930 -30.08745 -29.42222 -29.15030 -27.72453 -27.38032 -26.04261 -24.10651 -23.16298 -21.75679 -19.80043 -18.68248 -18.42254 -17.28021 -16.89447 -16.59138 -16.43567 -15.99502 -15.40235 -15.32050 -15.04189 -14.51991 -14.31702 -13.97236 -13.79333 -13.72450 -13.20266 -13.02915 -12.94527 -12.81142 -12.75278 -12.67056 -12.32232 -12.20527 -12.04893 -11.88498 -11.71213 -11.51600 -11.37313 -11.14656 -11.01745 -10.73589 -10.51950 -10.23634 -9.69316 -8.55221 -8.13852 -6.18937 0.03008 0.28402 1.40869 1.43032 1.50150 2.42312 2.76039 3.03785 3.19787 3.30806 3.63480 3.72701 4.06760 4.11669 4.18068 4.20385 4.30064 4.44268 4.51167 4.65685 4.71220 4.75730 4.82302 4.83468 4.88704 4.98593 5.00339 5.05675 5.10846 5.16152 5.23992 5.28533 5.37135 5.48330 5.51753 5.61842 5.63786 5.68448 5.73919 5.94492 6.10308 6.24755 6.44157 6.72747 6.95861 7.30655 7.46982 8.97514 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.005590 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.866449 B = 5007.760182 C = 5555.346096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.148 3.852 3 C -0.225 4.225 4 C 0.132 3.868 5 N -0.548 5.548 6 C 0.325 3.675 7 C 0.090 3.910 8 N -0.537 5.537 9 C 0.167 3.833 10 C -0.514 4.514 11 H 0.063 0.937 12 C 0.009 3.991 13 N -0.929 5.929 14 Si 0.955 3.045 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.078 3.922 19 C -0.092 4.092 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.121 4.121 23 N -0.509 5.509 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.042 0.958 32 H -0.015 1.015 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 12.367 -5.719 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.003 3.997 3 C -0.247 4.247 4 C -0.032 4.032 5 N -0.263 5.263 6 C 0.057 3.943 7 C -0.039 4.039 8 N -0.260 5.260 9 C 0.042 3.958 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.189 4.189 13 N -0.570 5.570 14 Si 0.781 3.219 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.201 1.201 18 C -0.050 4.050 19 C -0.094 4.094 20 C -0.211 4.211 21 C -0.185 4.185 22 C -0.178 4.178 23 N -0.225 5.225 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.200 0.800 28 H 0.209 0.791 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.252 11.789 -5.481 20.042 hybrid contribution 0.262 -0.412 0.510 0.706 sum -14.990 11.377 -4.972 19.464 Atomic orbital electron populations 1.20869 0.85347 1.04866 1.04614 1.22636 0.99462 0.88539 0.89108 1.23087 0.95951 1.01584 1.04044 1.23822 0.93578 0.96003 0.89827 1.68222 1.43222 0.99905 1.14973 1.22931 0.87191 0.93974 0.90209 1.21445 0.98865 0.90817 0.92761 1.62122 1.11846 1.38811 1.13269 1.20489 0.89369 0.88106 0.97812 1.21498 1.18300 1.18003 0.97395 0.91910 1.25719 0.95077 0.97431 1.00702 1.70074 1.22191 1.29273 1.35438 0.85653 0.78003 0.77946 0.80330 1.19191 1.21030 1.20082 1.22214 0.88587 0.96216 0.98014 1.21136 0.95871 0.95635 0.96720 1.22692 0.98592 0.99519 1.00285 1.21738 0.98447 0.99240 0.99057 1.22666 0.98631 0.98485 0.98008 1.69090 1.08485 1.29733 1.15175 0.88403 0.90552 0.87834 0.79977 0.79068 0.88405 0.91583 0.94119 0.99712 0.92979 0.91567 0.93219 0.92735 0.93391 0.92159 0.92014 0.92092 0.94480 0.92154 0.94305 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.22 71.24 0.73 -0.59 16 2 C 0.15 3.27 6.82 42.58 0.29 3.56 16 3 C -0.23 -4.21 9.86 22.44 0.22 -3.99 16 4 C 0.13 3.16 11.30 84.70 0.96 4.12 16 5 N -0.55 -18.78 10.33 -187.85 -1.94 -20.73 16 6 C 0.32 11.46 6.40 138.75 0.89 12.35 16 7 C 0.09 3.59 4.30 85.56 0.37 3.96 16 8 N -0.54 -24.61 4.83 -905.33 -4.38 -28.98 16 9 C 0.17 8.93 4.19 85.56 0.36 9.29 16 10 C -0.51 -28.92 7.51 25.60 0.19 -28.73 16 11 H 0.06 3.50 5.50 -2.91 -0.02 3.49 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 14 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 C 0.08 3.21 4.56 86.30 0.39 3.61 16 19 C -0.09 -3.27 0.77 -52.18 -0.04 -3.32 16 20 C -0.15 -6.19 6.17 71.98 0.44 -5.75 16 21 C -0.13 -4.07 8.29 71.98 0.60 -3.47 16 22 C -0.12 -3.67 6.48 71.98 0.47 -3.21 16 23 N -0.51 -15.03 4.38 -176.01 -0.77 -15.80 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.14 7.61 -2.39 -0.02 1.12 16 26 H 0.10 0.82 8.10 -2.39 -0.02 0.80 16 27 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.10 3.72 2.42 -2.39 -0.01 3.72 16 30 H 0.07 2.79 8.05 -2.39 -0.02 2.78 16 31 H 0.04 2.21 3.38 -4.99 -0.02 2.19 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.07 3.06 4.88 -2.39 -0.01 3.05 16 35 H 0.05 1.98 6.69 -2.39 -0.02 1.97 16 36 H 0.05 2.61 5.75 -2.39 -0.01 2.60 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 2.53 3.25 -2.38 -0.01 2.52 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 42 H 0.06 1.95 3.79 -2.39 -0.01 1.94 16 43 H 0.04 1.05 8.05 -2.38 -0.02 1.03 16 44 H 0.08 2.36 5.24 -2.39 -0.01 2.35 16 Total: -1.00 -68.76 321.97 2.55 -66.21 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.00 Total: 19.22 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 6.33 Total: -11.20 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -6.80 Total: -121.13 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.76 2.55 -66.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336727899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.934 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds