Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47158 * 2 1 4 4 C 1.35902 * 117.00124 * 180.02562 * 3 2 1 5 5 C 1.38732 * 120.05978 * 180.02562 * 4 3 2 6 6 C 1.38144 * 119.94700 * 180.02562 * 5 4 3 7 7 C 1.38263 * 120.05501 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.94743 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47144 * 89.99743 * 8 7 6 10 10 C 1.46906 * 110.99573 * 66.05037 * 9 8 7 11 11 C 1.46898 * 111.00283 * 190.00178 * 9 8 7 12 12 C 1.53000 * 109.47048 * 170.00220 * 11 9 8 13 13 C 1.52996 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99716 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00145 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99976 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99845 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47283 * 60.00378 * 18 16 14 20 20 H 1.48504 * 109.47075 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47403 * 300.00012 * 18 16 14 22 22 C 1.38268 * 120.11131 * 0.25786 * 7 6 5 23 23 C 1.38144 * 120.05643 * 359.44255 * 22 7 6 24 24 H 1.08999 * 109.46815 * 60.00558 * 1 2 3 25 25 H 1.09000 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46885 * 300.00195 * 1 2 3 27 27 H 1.08998 * 109.47399 * 239.99726 * 2 1 3 28 28 H 1.08995 * 109.46993 * 119.99915 * 2 1 3 29 29 H 1.08005 * 120.02202 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.96861 * 179.97438 * 6 5 4 31 31 H 1.09001 * 109.46836 * 330.00597 * 8 7 6 32 32 H 1.08994 * 109.47440 * 210.00506 * 8 7 6 33 33 H 1.09001 * 109.46544 * 183.95424 * 10 9 8 34 34 H 1.09001 * 109.47272 * 303.95030 * 10 9 8 35 35 H 1.09000 * 109.47033 * 63.95479 * 10 9 8 36 36 H 1.08992 * 109.47062 * 290.00772 * 11 9 8 37 37 H 1.09003 * 109.46753 * 50.00460 * 11 9 8 38 38 H 1.09001 * 109.47085 * 300.00035 * 12 11 9 39 39 H 1.08993 * 109.47201 * 60.00475 * 12 11 9 40 40 H 1.09004 * 109.47112 * 300.00527 * 13 12 11 41 41 H 1.09003 * 109.47557 * 59.99525 * 13 12 11 42 42 H 0.96997 * 119.99783 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.96932 * 179.70596 * 22 7 6 44 44 H 1.07996 * 120.03169 * 180.25441 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2551 2.9851 -0.0011 7 6 6.0963 1.8877 -0.0032 8 6 7.5903 2.0851 -0.0050 9 7 8.0775 2.1480 1.3794 10 6 7.8961 0.8590 2.0603 11 6 9.4827 2.5738 1.4242 12 6 9.8807 2.8678 2.8720 13 6 11.3440 3.3119 2.9185 14 6 11.7359 3.6021 4.3444 15 1 11.0133 3.4822 5.1381 16 6 13.0168 4.0207 4.6358 17 7 13.8966 4.1671 3.6693 18 14 13.5027 4.3797 6.4035 19 1 13.3309 3.1532 7.2229 20 1 14.9230 4.8108 6.4486 21 1 12.6402 5.4610 6.9440 22 6 5.5690 0.6096 -0.0097 23 6 4.1999 0.4259 -0.0024 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2285 3.6642 0.0004 30 1 5.6693 3.9825 -0.0012 31 1 7.8332 3.0155 -0.5182 32 1 8.0664 1.2510 -0.5203 33 1 8.1998 0.9530 3.1030 34 1 6.8470 0.5672 2.0124 35 1 8.5070 0.1004 1.5709 36 1 10.1157 1.7801 1.0273 37 1 9.6089 3.4741 0.8227 38 1 9.2477 3.6615 3.2687 39 1 9.7546 1.9676 3.4734 40 1 11.9773 2.5185 2.5215 41 1 11.4699 4.2122 2.3171 42 1 14.7979 4.4613 3.8744 43 1 6.2282 -0.2459 -0.0161 44 1 3.7885 -0.5727 -0.0032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336735481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -45.409665 kcal Electronic energy + Delta-G solvation = -20561.432416 eV Core-core repulsion = 17477.678058 eV Total energy + Delta-G solvation = -3083.754358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15952 -39.42828 -37.90855 -35.64862 -33.63196 -32.72328 -31.91802 -31.07432 -28.64962 -27.81687 -25.65625 -24.83831 -23.38114 -22.82638 -21.63040 -21.46635 -19.20504 -18.46890 -17.03725 -17.03503 -16.74634 -16.57094 -16.47924 -16.05882 -15.40265 -15.15527 -14.67522 -14.41674 -14.37060 -14.21592 -14.11007 -13.63928 -13.37680 -13.17574 -12.90938 -12.75464 -12.71315 -12.62762 -12.50163 -12.46244 -12.22800 -12.09579 -11.63571 -11.59423 -11.40483 -11.34103 -11.07880 -10.53462 -9.91434 -9.31216 -8.99594 -8.19091 -6.29945 0.42009 0.43458 1.40171 1.43519 1.51411 2.28474 2.41559 2.69110 3.13619 3.25520 3.82534 3.88038 3.98725 4.06394 4.12619 4.17421 4.28585 4.34556 4.37475 4.44101 4.50658 4.56169 4.65610 4.75140 4.75968 4.80317 4.92765 4.94694 4.96454 5.05642 5.11359 5.11567 5.20784 5.27602 5.33279 5.40385 5.53369 5.71552 5.76476 5.84376 5.87316 6.10910 6.18720 6.29438 6.48809 6.86481 7.38860 8.92460 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038673 B = 0.002440 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.854875 B =11471.450589 C =11677.680897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.116 3.884 5 C -0.165 4.165 6 C -0.066 4.066 7 C -0.119 4.119 8 C 0.097 3.903 9 N -0.545 5.545 10 C 0.022 3.978 11 C 0.068 3.932 12 C -0.089 4.089 13 C 0.026 3.974 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.076 4.076 23 C -0.210 4.210 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.049 0.951 40 H -0.009 1.009 41 H -0.007 1.007 42 H 0.264 0.736 43 H 0.135 0.865 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.004 -10.102 -10.229 28.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.070 3.930 5 C -0.184 4.184 6 C -0.085 4.085 7 C -0.120 4.120 8 C -0.030 4.030 9 N -0.269 5.269 10 C -0.125 4.125 11 C -0.060 4.060 12 C -0.127 4.127 13 C -0.012 4.012 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.095 4.095 23 C -0.228 4.228 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.009 0.991 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.152 0.848 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.268 -9.573 -10.023 28.820 hybrid contribution 1.282 -0.430 0.369 1.402 sum -23.986 -10.003 -9.654 27.723 Atomic orbital electron populations 1.21807 0.91555 1.04148 1.03146 1.23045 0.96861 0.80859 1.02195 1.86049 1.18890 1.31242 1.88697 1.19166 0.82626 0.94512 0.96679 1.20598 0.95366 0.95361 1.07043 1.20993 0.91966 0.99365 0.96133 1.19709 0.94945 0.93563 1.03788 1.21015 0.91107 1.01962 0.88939 1.62016 1.18972 1.30046 1.15871 1.22464 1.01805 0.89091 0.99189 1.22047 0.87051 0.99386 0.97501 1.21390 0.96180 0.99973 0.95173 1.18972 0.92159 0.94551 0.95487 1.21658 0.96942 1.45031 0.94480 0.92421 1.25994 0.96661 0.95300 1.02011 1.70090 1.05011 1.48081 1.34103 0.85499 0.77171 0.79001 0.79366 1.19184 1.20722 1.19242 1.21034 0.94687 0.96828 0.96954 1.21384 0.93961 0.98677 1.08821 0.91795 0.88210 0.92007 0.91066 0.91372 0.84633 0.84655 0.89732 0.93537 0.92118 0.90346 0.95333 0.95474 0.91148 0.93193 0.93265 0.99086 0.98897 0.92776 0.84758 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.04 0.57 5.46 71.98 0.39 0.96 16 3 O -0.33 -6.72 10.14 -92.44 -0.94 -7.65 16 4 C 0.12 2.48 6.69 22.51 0.15 2.63 16 5 C -0.17 -3.64 9.99 22.37 0.22 -3.42 16 6 C -0.07 -1.49 9.69 22.25 0.22 -1.28 16 7 C -0.12 -2.73 4.88 -19.85 -0.10 -2.83 16 8 C 0.10 2.37 5.12 85.56 0.44 2.81 16 9 N -0.55 -16.29 4.75 -927.05 -4.41 -20.69 16 10 C 0.02 0.61 8.98 127.69 1.15 1.76 16 11 C 0.07 2.38 4.96 86.30 0.43 2.81 16 12 C -0.09 -3.83 5.08 30.59 0.16 -3.67 16 13 C 0.03 1.40 4.97 29.85 0.15 1.55 16 14 C -0.54 -31.74 9.11 25.60 0.23 -31.51 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 17 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 18 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 C -0.08 -1.54 7.91 22.25 0.18 -1.37 16 23 C -0.21 -3.97 9.04 22.37 0.20 -3.77 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 28 H 0.07 0.76 7.67 -2.39 -0.02 0.75 16 29 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.08 2.00 7.87 -2.39 -0.02 1.98 16 32 H 0.05 1.06 8.06 -2.39 -0.02 1.04 16 33 H 0.06 1.81 6.47 -2.39 -0.02 1.79 16 34 H 0.08 1.90 5.91 -2.39 -0.01 1.88 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.07 6.55 -2.39 -0.02 2.06 16 40 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.13 2.29 8.00 -2.91 -0.02 2.26 16 44 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16 Total: -1.00 -67.19 356.35 2.93 -64.26 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.95 Total: 9.90 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 5.02 Total: -35.60 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -4.12 Total: -77.97 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.94 Total: -7.65 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.19 2.93 -64.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336735481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -67.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds