Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47078 * 2 1 4 4 C 1.42900 * 114.00125 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47021 * 60.00188 * 5 4 3 7 7 C 1.53001 * 109.47043 * 300.00290 * 5 4 3 8 8 N 1.46902 * 109.46962 * 180.02562 * 5 4 3 9 9 C 1.46895 * 110.99798 * 180.02562 * 8 5 4 10 10 C 1.50696 * 109.47395 * 179.97438 * 9 8 5 11 11 C 1.38635 * 119.74985 * 269.73125 * 10 9 8 12 12 C 1.37617 * 120.24687 * 179.71926 * 11 10 9 13 13 C 1.40716 * 119.74723 * 0.57065 * 12 11 10 14 14 C 1.41396 * 120.24644 * 179.68554 * 13 12 11 15 15 H 1.08005 * 119.99733 * 204.40359 * 14 13 12 16 16 C 1.39939 * 120.00101 * 24.40261 * 14 13 12 17 17 N 1.30820 * 120.00244 * 17.84696 * 16 14 13 18 18 Si 1.86804 * 120.00028 * 197.85075 * 16 14 13 19 19 H 1.48499 * 109.47197 * 89.99595 * 18 16 14 20 20 H 1.48506 * 109.47141 * 209.99804 * 18 16 14 21 21 H 1.48498 * 109.46874 * 329.99781 * 18 16 14 22 22 C 1.40719 * 119.51127 * 359.69821 * 13 12 11 23 23 C 1.37620 * 119.74095 * 0.02562 * 22 13 12 24 24 H 1.09001 * 109.46940 * 60.00510 * 1 2 3 25 25 H 1.08998 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47559 * 300.00289 * 1 2 3 27 27 H 1.08996 * 109.47559 * 239.99711 * 2 1 3 28 28 H 1.08997 * 109.47280 * 119.99857 * 2 1 3 29 29 H 1.09005 * 109.46744 * 60.00052 * 4 3 2 30 30 H 1.09002 * 109.47277 * 300.00330 * 4 3 2 31 31 H 1.08994 * 109.47385 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47163 * 300.00120 * 6 5 4 33 33 H 1.09002 * 109.47020 * 60.00051 * 6 5 4 34 34 H 1.09005 * 109.46591 * 300.00030 * 7 5 4 35 35 H 1.09000 * 109.47126 * 59.99889 * 7 5 4 36 36 H 1.08993 * 109.46970 * 180.02562 * 7 5 4 37 37 H 1.00897 * 111.00112 * 56.04744 * 8 5 4 38 38 H 1.09007 * 109.47449 * 59.99598 * 9 8 5 39 39 H 1.08998 * 109.47065 * 300.00125 * 9 8 5 40 40 H 1.07993 * 119.87867 * 359.97096 * 11 10 9 41 41 H 1.08003 * 120.13271 * 180.27444 * 12 11 10 42 42 H 0.96997 * 120.00535 * 180.02562 * 17 16 14 43 43 H 1.07994 * 120.12787 * 179.97438 * 22 13 12 44 44 H 1.08006 * 119.87289 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 6 3.2595 3.6167 1.2504 7 6 3.2604 3.6175 -1.2481 8 7 5.2898 3.0544 0.0012 9 6 5.7063 4.4630 0.0023 10 6 7.2112 4.5420 0.0029 11 6 7.8974 4.5828 1.2068 12 6 9.2719 4.6491 1.2193 13 6 9.9802 4.6876 0.0040 14 6 11.3921 4.7625 0.0045 15 1 11.9112 5.1777 -0.8468 16 6 12.1170 4.2987 1.1080 17 7 11.5517 3.4939 1.9707 18 14 13.8919 4.8288 1.3494 19 1 13.9313 6.0724 2.1600 20 1 14.6379 3.7550 2.0536 21 1 14.5176 5.0803 0.0263 22 6 9.2728 4.6513 -1.2120 23 6 7.8986 4.5792 -1.2005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8339 0.9765 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.5409 4.6697 1.2511 32 1 2.1729 3.5306 1.2500 33 1 3.6620 3.1329 2.1404 34 1 3.6635 3.1342 -2.1380 35 1 2.1738 3.5314 -1.2485 36 1 3.5418 4.6705 -1.2479 37 1 5.6917 2.5588 -0.7804 38 1 5.3166 4.9565 0.8928 39 1 5.3165 4.9579 -0.8872 40 1 7.3516 4.5583 2.1383 41 1 9.8049 4.6763 2.1583 42 1 12.0540 3.1727 2.7358 43 1 9.8063 4.6808 -2.1505 44 1 7.3535 4.5517 -2.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339376067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = -42.787785 kcal Electronic energy + Delta-G solvation = -21157.463182 eV Core-core repulsion = 18073.822517 eV Total energy + Delta-G solvation = -3083.640665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.99982 -37.71291 -36.61562 -33.85674 -32.03845 -30.88958 -29.34641 -28.94558 -27.19963 -26.77333 -25.59769 -23.08607 -22.84152 -20.93171 -19.87551 -19.04523 -17.26817 -16.72949 -16.20559 -15.92747 -15.27060 -14.53715 -14.44091 -14.10274 -13.97066 -13.63234 -13.23375 -13.03282 -12.73152 -12.60405 -12.42719 -12.35832 -11.90556 -11.78694 -11.52079 -11.50108 -11.34712 -11.27024 -11.08384 -10.93138 -10.87710 -10.44986 -10.40122 -10.29243 -9.64625 -9.56821 -9.33312 -9.10673 -8.00721 -7.40996 -7.27323 -6.73501 -4.32650 2.75837 3.07898 3.10866 3.11669 3.17956 3.53114 3.94531 4.54240 4.79102 4.84876 4.87128 4.98772 5.06690 5.18762 5.28120 5.47171 5.52639 5.62786 5.70017 5.72384 5.76506 5.88042 5.90151 5.91036 5.96756 6.07199 6.13962 6.21983 6.35633 6.41994 6.45569 6.53020 6.99068 7.09640 7.12850 7.32978 7.39130 7.46745 7.64567 7.75563 7.93258 8.08673 8.18748 8.33266 8.67755 8.92304 9.01045 10.20741 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.002983 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.876638 B = 9383.933495 C = 9657.065158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.386 6.386 4 C 0.076 3.924 5 C 0.111 3.889 6 C -0.133 4.133 7 C -0.176 4.176 8 N -0.673 5.673 9 C 0.124 3.876 10 C -0.212 4.212 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.791 5.791 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.339 0.661 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.280 0.720 43 H 0.090 0.910 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 -4.143 -1.925 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.305 6.305 4 C -0.001 4.001 5 C 0.020 3.980 6 C -0.191 4.191 7 C -0.235 4.235 8 N -0.305 5.305 9 C -0.004 4.004 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.109 3.891 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.417 5.417 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.319 -4.202 -1.022 15.918 hybrid contribution 0.889 0.024 -0.821 1.210 sum -14.431 -4.178 -1.843 15.136 Atomic orbital electron populations 1.21729 0.93952 1.02024 1.03012 1.22417 0.95334 0.84178 1.00014 1.87826 1.21290 1.25907 1.95449 1.22404 0.80545 0.96595 1.00528 1.20815 0.88890 0.92962 0.95365 1.21790 1.00288 1.00214 0.96780 1.22473 1.02021 1.01110 0.97921 1.60712 1.05110 1.14651 1.50001 1.20625 0.93425 0.87161 0.99149 1.18918 0.92396 1.16618 0.93458 1.20501 0.94393 0.99567 0.95323 1.21317 0.92288 1.06423 0.98677 1.17626 0.93201 0.87343 0.90903 1.19598 0.91601 1.36152 1.01982 0.90536 1.25906 1.00719 0.92666 0.94912 1.69833 1.38613 1.22289 1.10927 0.86334 0.81819 0.79203 0.79476 1.19293 1.20349 1.18672 1.20928 0.93251 1.13630 0.96933 1.20356 0.94244 1.00670 0.95158 0.91997 0.91310 0.91897 0.93650 0.93477 0.93684 0.92421 0.92579 0.92073 0.92173 0.93173 0.91750 0.92283 0.84265 0.91581 0.95861 0.89501 0.86541 0.90906 0.89224 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.54 6.66 37.16 0.25 0.79 16 3 O -0.39 -4.68 8.99 -35.23 -0.32 -5.00 16 4 C 0.08 0.96 5.07 37.16 0.19 1.15 16 5 C 0.11 1.51 0.80 -131.60 -0.10 1.40 16 6 C -0.13 -1.77 8.09 37.16 0.30 -1.47 16 7 C -0.18 -2.25 8.09 37.16 0.30 -1.95 16 8 N -0.67 -10.83 6.08 -101.22 -0.62 -11.45 16 9 C 0.12 2.17 5.02 -4.98 -0.02 2.14 16 10 C -0.21 -4.57 5.42 -104.33 -0.56 -5.14 16 11 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 12 C -0.17 -4.40 8.70 -38.87 -0.34 -4.73 16 13 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 14 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 15 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 16 C 0.08 1.92 5.14 -17.35 -0.09 1.83 16 17 N -0.79 -20.67 10.95 55.55 0.61 -20.06 16 18 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 23 C -0.09 -1.90 9.67 -39.66 -0.38 -2.28 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.75 6.40 -51.93 -0.33 0.42 16 32 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.06 0.77 6.40 -51.93 -0.33 0.44 16 37 H 0.34 5.49 8.71 -39.29 -0.34 5.15 16 38 H 0.07 1.14 6.24 -51.92 -0.32 0.82 16 39 H 0.02 0.39 6.24 -51.93 -0.32 0.06 16 40 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 44 H 0.08 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -27.27 353.13 -9.22 -36.49 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.40 Total: 8.56 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -1.79 Total: -27.62 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: -0.01 Total: -31.51 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.32 Total: -5.00 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.27 -9.22 -36.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339376067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.297 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds