Wall clock time and date at job start Mon Mar 30 2020 02:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46900 * 109.47019 * 2 1 4 4 C 1.46899 * 110.99870 * 200.79072 * 3 2 1 5 5 C 1.50703 * 109.46697 * 74.54001 * 4 3 2 6 6 H 1.07998 * 120.00342 * 5.08977 * 5 4 3 7 7 C 1.37883 * 119.99510 * 185.08476 * 5 4 3 8 8 N 1.31512 * 120.00090 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99562 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47286 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46972 * 120.00224 * 9 7 5 12 12 H 1.48496 * 109.47307 * 239.99872 * 9 7 5 13 13 C 1.46900 * 110.99788 * 76.84047 * 3 2 1 14 14 H 1.08996 * 109.47425 * 329.45326 * 13 3 2 15 15 C 1.52999 * 109.47251 * 89.46301 * 13 3 2 16 16 C 1.53000 * 109.46855 * 298.01045 * 15 13 3 17 17 O 1.42904 * 109.47097 * 185.31027 * 16 15 13 18 18 C 1.42895 * 113.99769 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47042 * 209.45817 * 13 3 2 20 20 C 1.38238 * 119.99980 * 331.36868 * 19 13 3 21 21 C 1.38230 * 120.00030 * 179.78687 * 20 19 13 22 22 C 1.38233 * 120.00018 * 0.44079 * 21 20 19 23 23 C 1.38235 * 120.00345 * 359.80662 * 22 21 20 24 24 C 1.38234 * 119.99383 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47427 * 294.79681 * 1 2 3 26 26 H 1.08997 * 109.46988 * 54.79565 * 1 2 3 27 27 H 1.08997 * 109.47255 * 174.79681 * 1 2 3 28 28 H 1.09005 * 109.46335 * 119.99727 * 2 1 3 29 29 H 1.08995 * 109.47042 * 239.99415 * 2 1 3 30 30 H 1.09002 * 109.46906 * 194.53831 * 4 3 2 31 31 H 1.09001 * 109.47162 * 314.53961 * 4 3 2 32 32 H 0.96997 * 119.99849 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47535 * 58.01053 * 15 13 3 34 34 H 1.09007 * 109.47169 * 178.01614 * 15 13 3 35 35 H 1.09004 * 109.47310 * 305.31208 * 16 15 13 36 36 H 1.09000 * 109.46935 * 65.31051 * 16 15 13 37 37 H 1.09008 * 109.47374 * 299.99773 * 18 17 16 38 38 H 1.08998 * 109.47722 * 59.99840 * 18 17 16 39 39 H 1.09004 * 109.47342 * 179.97438 * 18 17 16 40 40 H 1.08001 * 119.99999 * 359.97438 * 20 19 13 41 41 H 1.08003 * 119.99900 * 180.26920 * 21 20 19 42 42 H 1.08004 * 120.00048 * 179.83487 * 22 21 20 43 43 H 1.07998 * 120.00327 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.00037 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4040 1.4539 -0.4868 5 6 3.4207 1.2639 -1.9817 6 1 2.4915 1.1898 -2.5271 7 6 4.6224 1.1847 -2.6531 8 7 5.7539 1.2745 -1.9888 9 14 4.6432 0.9483 -4.5059 10 1 3.2488 0.8770 -5.0115 11 1 5.3423 2.0932 -5.1432 12 1 5.3551 -0.3123 -4.8362 13 6 1.9008 1.9854 1.3354 14 1 1.0484 1.5485 1.8557 15 6 3.1785 1.7141 2.1322 16 6 3.3573 0.2051 2.3109 17 8 4.4806 -0.0443 3.1583 18 6 4.7368 -1.4308 3.3905 19 6 1.6987 3.4728 1.2013 20 6 2.2146 4.1446 0.1089 21 6 2.0255 5.5082 -0.0164 22 6 1.3284 6.2015 0.9554 23 6 0.8170 5.5305 2.0505 24 6 1.0022 4.1662 2.1734 25 1 -0.3634 0.4310 0.9329 26 1 -0.3633 0.5924 -0.8397 27 1 -0.3633 -1.0234 -0.0932 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.8280 2.4272 -0.2395 31 1 3.9949 0.6694 -0.0141 32 1 6.5993 1.2184 -2.4611 33 1 4.0351 2.1203 1.5945 34 1 3.1045 2.1896 3.1103 35 1 2.4598 -0.2160 2.7639 36 1 3.5254 -0.2584 1.3388 37 1 3.8680 -1.8863 3.8658 38 1 4.9338 -1.9281 2.4407 39 1 5.6045 -1.5359 4.0419 40 1 2.7627 3.6037 -0.6483 41 1 2.4247 6.0324 -0.8721 42 1 1.1830 7.2673 0.8589 43 1 0.2720 6.0721 2.8095 44 1 0.6030 3.6420 3.0291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339867449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:19 Heat of formation + Delta-G solvation = -8.883134 kcal Electronic energy + Delta-G solvation = -22671.500279 eV Core-core repulsion = 19589.329830 eV Total energy + Delta-G solvation = -3082.170449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.59757 -37.88708 -36.73193 -32.88653 -32.23450 -30.52903 -30.22968 -29.41416 -27.10490 -25.98639 -24.68878 -22.89908 -21.92276 -21.46510 -20.96577 -19.03531 -16.92856 -16.54530 -15.80041 -15.51528 -15.22737 -14.91419 -14.56377 -14.46878 -13.85568 -13.71537 -13.43265 -13.23465 -12.85021 -12.62432 -12.39334 -12.11123 -11.78875 -11.63017 -11.46664 -11.15369 -11.05171 -10.95104 -10.81376 -10.79842 -10.68403 -10.31230 -10.14288 -9.91224 -9.67202 -9.30353 -9.14651 -8.43773 -8.41181 -8.16643 -7.21649 -6.03042 -4.05046 1.82372 1.93294 3.29435 3.37889 3.42506 4.00349 4.33027 4.41774 4.81949 5.23730 5.30648 5.32604 5.35690 5.41433 5.49645 5.53102 5.58737 5.65630 5.68431 5.76115 5.78953 5.82130 5.92816 5.95937 6.03964 6.09104 6.18150 6.29677 6.41088 6.46696 6.59679 6.66546 6.69671 6.75387 6.89336 7.08365 7.11805 7.33505 7.38833 7.45998 7.58156 7.82937 8.10030 8.17625 8.53048 9.05154 9.59785 11.06273 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.007714 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.946356 B = 3629.088509 C = 5067.186474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.180 3.820 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.124 3.876 14 H 0.075 0.925 15 C -0.143 4.143 16 C 0.057 3.943 17 O -0.393 6.393 18 C 0.034 3.966 19 C -0.060 4.060 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.123 4.123 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.028 0.972 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 0.859 9.015 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.251 5.251 4 C 0.056 3.944 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.014 3.986 14 H 0.093 0.907 15 C -0.182 4.182 16 C -0.019 4.019 17 O -0.312 6.312 18 C -0.063 4.063 19 C -0.060 4.060 20 C -0.109 4.109 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.142 4.142 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.173 0.827 41 H 0.134 0.866 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.587 1.262 8.729 11.633 hybrid contribution 0.502 -0.799 -0.525 1.080 sum -7.085 0.462 8.203 10.849 Atomic orbital electron populations 1.21790 0.96570 1.00199 1.01511 1.22223 0.94523 0.90443 1.01120 1.62279 1.26344 1.16864 1.19612 1.20094 0.81953 0.97052 0.95345 1.21236 0.92388 1.49055 0.91996 0.91803 1.24979 0.95604 0.95578 0.98322 1.69969 0.97286 1.50621 1.35511 0.86523 0.78077 0.77595 0.85726 1.19682 1.21088 1.21228 1.20521 0.95794 0.91516 0.90742 0.90710 1.22227 1.00511 0.94418 1.01002 1.23044 0.87345 0.97366 0.94150 1.87852 1.49928 1.23971 1.69407 1.22670 1.00275 0.82974 1.00375 1.19774 0.96950 0.94811 0.94490 1.21820 0.97293 0.93792 0.98022 1.21223 0.99408 0.94944 0.98863 1.21041 0.99575 0.99222 0.95180 1.20914 1.01437 0.94433 0.98317 1.20899 1.00200 0.94329 0.98756 0.93904 0.92057 0.93520 0.95383 0.89855 0.94551 0.97575 0.93002 0.89307 0.91723 0.94324 0.91200 0.94680 0.93968 0.90056 0.82651 0.86557 0.87060 0.86988 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.98 37.16 0.37 -1.81 16 2 C 0.04 0.81 4.88 -3.82 -0.02 0.80 16 3 N -0.53 -10.54 3.74 -229.47 -0.86 -11.39 16 4 C 0.18 4.31 2.11 -4.98 -0.01 4.30 16 5 C -0.51 -13.51 8.38 -34.44 -0.29 -13.80 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.12 2.17 2.08 -68.86 -0.14 2.03 16 14 H 0.07 1.20 6.54 -51.93 -0.34 0.86 16 15 C -0.14 -2.57 4.53 -26.73 -0.12 -2.69 16 16 C 0.06 0.99 4.13 37.16 0.15 1.14 16 17 O -0.39 -7.01 10.70 -35.23 -0.38 -7.39 16 18 C 0.03 0.47 11.01 101.05 1.11 1.58 16 19 C -0.06 -1.05 5.03 -104.62 -0.53 -1.58 16 20 C -0.09 -1.75 8.71 -39.58 -0.34 -2.09 16 21 C -0.13 -2.10 10.05 -39.59 -0.40 -2.50 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 24 C -0.12 -1.87 9.71 -39.58 -0.38 -2.26 16 25 H 0.04 0.61 7.01 -51.93 -0.36 0.24 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.48 4.56 -51.93 -0.24 0.24 16 29 H 0.08 1.68 7.23 -51.93 -0.38 1.31 16 30 H 0.04 0.94 4.71 -51.93 -0.24 0.69 16 31 H 0.01 0.17 5.46 -51.93 -0.28 -0.11 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.09 1.87 6.10 -51.93 -0.32 1.55 16 34 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 35 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 36 H 0.07 1.37 4.27 -51.93 -0.22 1.14 16 37 H 0.03 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.16 3.43 4.83 -52.49 -0.25 3.18 16 41 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -28.83 340.34 -8.69 -37.52 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.81 Total: 4.96 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -1.49 Total: -20.02 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.12 Total: -36.37 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.38 Total: -7.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.83 -8.69 -37.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339867449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.633 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds