Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38596 * 120.79970 * 2 1 4 4 N 1.32333 * 119.10260 * 180.02562 * 3 2 1 5 5 C 1.31794 * 120.81891 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.11812 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46803 * 90.00513 * 6 5 4 8 8 N 1.46903 * 109.47083 * 179.97438 * 7 6 5 9 9 C 1.46900 * 111.00214 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47238 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.47075 * 299.99863 * 10 9 8 12 12 C 1.53004 * 109.47476 * 59.99765 * 10 9 8 13 13 C 1.52998 * 109.47220 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.47414 * 179.97438 * 13 10 9 15 15 H 1.08004 * 119.99963 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00335 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00112 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99523 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47220 * 90.00519 * 18 16 14 20 20 H 1.48504 * 109.46956 * 209.99914 * 18 16 14 21 21 H 1.48490 * 109.47612 * 330.00011 * 18 16 14 22 22 N 1.31794 * 121.75681 * 0.02562 * 5 4 3 23 23 C 1.32338 * 120.81727 * 359.97438 * 22 5 4 24 24 H 1.08996 * 109.46709 * 269.97476 * 1 2 3 25 25 H 1.08994 * 109.47421 * 29.97797 * 1 2 3 26 26 H 1.09006 * 109.46880 * 149.97746 * 1 2 3 27 27 H 1.08003 * 120.44608 * 0.04351 * 3 2 1 28 28 H 1.09002 * 109.46793 * 210.00101 * 6 5 4 29 29 H 1.09002 * 109.47619 * 330.00410 * 6 5 4 30 30 H 1.08993 * 109.47363 * 299.99408 * 7 6 5 31 31 H 1.09002 * 109.47117 * 59.99590 * 7 6 5 32 32 H 1.00901 * 110.99562 * 56.05054 * 8 7 6 33 33 H 1.09004 * 109.46631 * 300.00540 * 9 8 7 34 34 H 1.08997 * 109.46876 * 60.00015 * 9 8 7 35 35 H 1.08998 * 109.46883 * 60.00182 * 11 10 9 36 36 H 1.08993 * 109.47078 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.46584 * 300.00172 * 11 10 9 38 38 H 1.09000 * 109.46508 * 60.00173 * 12 10 9 39 39 H 1.08998 * 109.46822 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.46582 * 300.00097 * 12 10 9 41 41 H 1.09001 * 109.47437 * 299.99617 * 13 10 9 42 42 H 1.09007 * 109.47355 * 59.99732 * 13 10 9 43 43 H 0.96997 * 120.00180 * 180.02562 * 17 16 14 44 44 H 1.07992 * 120.44490 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 -0.0005 5 6 4.1809 0.0000 -0.0005 6 6 5.6879 0.0001 -0.0017 7 6 6.1989 0.0006 1.4404 8 7 7.6680 0.0001 1.4393 9 6 8.1955 0.0012 2.8104 10 6 9.7248 0.0012 2.7684 11 6 10.2149 -1.2486 2.0344 12 6 10.2149 1.2499 2.0324 13 6 10.2742 0.0017 4.1963 14 6 11.7807 0.0012 4.1550 15 1 12.2948 0.0001 3.2052 16 6 12.5026 0.0009 5.3297 17 7 13.8172 0.0010 5.2936 18 14 11.6132 0.0021 6.9724 19 1 11.3766 -1.3977 7.4082 20 1 12.4444 0.7018 7.9848 21 1 10.3119 0.7030 6.8304 22 7 3.5395 -1.1514 -0.0005 23 6 2.2167 -1.1905 0.0000 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6972 2.1373 0.0007 28 1 6.0508 -0.8901 -0.5155 29 1 6.0508 0.8899 -0.5161 30 1 5.8360 0.8907 1.9542 31 1 5.8360 -0.8892 1.9549 32 1 8.0294 0.7811 0.9126 33 1 7.8466 0.8918 3.3331 34 1 7.8460 -0.8882 3.3348 35 1 9.8236 -1.2494 1.0171 36 1 11.3045 -1.2488 2.0049 37 1 9.8658 -2.1382 2.5588 38 1 9.8657 2.1402 2.5553 39 1 11.3044 1.2496 2.0021 40 1 9.8235 1.2490 1.0151 41 1 9.9252 0.8919 4.7197 42 1 9.9251 -0.8881 4.7203 43 1 14.3251 0.0004 6.1200 44 1 1.6973 -2.1373 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340104066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = 3.681852 kcal Electronic energy + Delta-G solvation = -20810.017400 eV Core-core repulsion = 17760.684561 eV Total energy + Delta-G solvation = -3049.332839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08000 -39.31139 -36.70110 -35.01198 -34.70936 -34.17284 -31.62192 -29.56640 -27.90981 -27.83431 -26.27435 -25.63163 -24.36351 -23.29363 -22.44555 -19.47288 -18.86378 -18.77775 -17.71288 -16.92710 -16.42173 -16.12603 -15.74661 -15.41977 -15.26104 -15.12042 -14.78766 -14.49212 -14.19001 -14.08871 -13.96056 -13.65483 -13.51780 -13.17476 -12.98403 -12.76627 -12.65555 -12.51415 -12.23800 -12.15587 -12.01554 -11.86178 -11.82588 -11.69429 -11.35204 -10.99562 -10.82552 -10.69667 -10.19635 -10.08965 -9.34014 -8.21287 -6.21280 -0.13366 0.12875 1.35663 1.36886 1.48126 2.39574 2.65600 2.85121 3.13459 3.23807 3.45363 3.68963 3.93492 3.94564 4.01591 4.13620 4.19793 4.24479 4.34327 4.36072 4.61923 4.69186 4.73665 4.78525 4.82895 4.91085 4.97000 5.00425 5.05630 5.10919 5.11301 5.18924 5.20423 5.37689 5.46146 5.50588 5.53896 5.62533 5.76887 5.82246 6.02054 6.04874 6.42123 6.50737 6.85813 7.11315 7.40883 8.94846 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.002721 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.941008 B =10286.527395 C =10601.344916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.189 4.189 3 C 0.133 3.867 4 N -0.536 5.536 5 C 0.298 3.702 6 C -0.042 4.042 7 C 0.080 3.920 8 N -0.681 5.681 9 C 0.080 3.920 10 C -0.048 4.048 11 C -0.110 4.110 12 C -0.126 4.126 13 C -0.004 4.004 14 C -0.502 4.502 15 H 0.046 0.954 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.251 1.251 22 N -0.535 5.535 23 C 0.133 3.867 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.194 0.806 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.347 0.653 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.012 0.988 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.313 1.033 -11.997 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.193 4.193 3 C -0.033 4.033 4 N -0.249 5.249 5 C 0.030 3.970 6 C -0.081 4.081 7 C -0.050 4.050 8 N -0.314 5.314 9 C -0.049 4.049 10 C -0.048 4.048 11 C -0.168 4.168 12 C -0.183 4.183 13 C -0.042 4.042 14 C -0.540 4.540 15 H 0.064 0.936 16 C -0.196 4.196 17 N -0.596 5.596 18 Si 0.765 3.235 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.175 1.175 22 N -0.248 5.248 23 C -0.033 4.033 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.211 0.789 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -29.124 0.356 -11.973 31.491 hybrid contribution -0.589 0.833 1.326 1.673 sum -29.713 1.189 -10.646 31.585 Atomic orbital electron populations 1.20737 0.86362 1.04873 1.03870 1.22090 1.00963 0.94714 1.01519 1.23761 0.88972 1.00065 0.90493 1.68268 1.11505 1.30650 1.14517 1.23166 0.98086 0.83773 0.91962 1.20253 0.85102 1.04973 0.97819 1.21657 0.88012 1.00021 0.95318 1.60448 1.06245 1.50544 1.14133 1.21867 0.94055 0.99743 0.89237 1.20348 0.92895 0.96190 0.95413 1.21532 0.99325 0.96048 0.99855 1.21710 1.00778 0.96392 0.99412 1.19612 0.94545 0.95705 0.94357 1.21420 0.91373 1.48045 0.93150 0.93588 1.25925 0.95386 0.95117 1.03164 1.70059 1.07113 1.53854 1.28552 0.85800 0.79420 0.78839 0.79406 1.19656 1.21372 1.17452 1.68280 1.11486 1.30707 1.14377 1.23768 0.88967 1.00079 0.90456 0.89635 0.89558 0.89575 0.78924 0.88480 0.88715 0.95706 0.91873 0.83279 0.95617 0.91799 0.91307 0.95160 0.94428 0.93737 0.94314 0.91282 0.96933 0.97117 0.92897 0.78960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 10.06 71.24 0.72 0.33 16 2 C -0.19 -2.25 5.91 -19.69 -0.12 -2.37 16 3 C 0.13 1.99 11.01 84.70 0.93 2.92 16 4 N -0.54 -11.72 10.33 -187.84 -1.94 -13.66 16 5 C 0.30 6.89 6.90 138.75 0.96 7.85 16 6 C -0.04 -0.93 5.91 29.85 0.18 -0.75 16 7 C 0.08 1.97 5.67 86.30 0.49 2.46 16 8 N -0.68 -18.32 5.71 -513.89 -2.94 -21.25 16 9 C 0.08 2.57 4.65 86.30 0.40 2.97 16 10 C -0.05 -1.85 0.60 -52.18 -0.03 -1.88 16 11 C -0.11 -4.27 8.06 71.98 0.58 -3.69 16 12 C -0.13 -4.59 7.89 71.98 0.57 -4.02 16 13 C 0.00 -0.20 3.11 29.85 0.09 -0.11 16 14 C -0.50 -28.62 8.20 25.60 0.21 -28.41 16 15 H 0.05 2.86 5.92 -2.91 -0.02 2.85 16 16 C 0.00 -0.02 5.47 84.66 0.46 0.45 16 17 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 18 Si 0.94 45.50 27.47 68.60 1.88 47.39 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 22 N -0.53 -11.95 10.33 -187.85 -1.94 -13.89 16 23 C 0.13 2.03 11.01 84.70 0.93 2.96 16 24 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.09 0.14 8.10 -2.39 -0.02 0.12 16 26 H 0.09 0.15 8.10 -2.38 -0.02 0.13 16 27 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.35 8.62 6.77 -89.69 -0.61 8.02 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.32 7.60 -2.39 -0.02 2.31 16 36 H 0.03 1.33 6.61 -2.39 -0.02 1.31 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.04 1.64 6.62 -2.39 -0.02 1.63 16 40 H 0.07 2.05 6.57 -2.39 -0.02 2.03 16 41 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 42 H 0.01 0.50 7.57 -2.38 -0.02 0.48 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -70.98 351.80 2.05 -68.94 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.31 Total: 14.11 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 6.37 Total: -21.29 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -6.52 Total: -109.15 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -70.98 2.05 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340104066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.621 kcal (2) G-P(sol) polarization free energy of solvation -70.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds