Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46744 * 2 1 4 4 C 1.50698 * 109.47003 * 240.00111 * 2 1 3 5 5 C 1.35645 * 119.79506 * 84.72401 * 4 2 1 6 6 C 1.41992 * 118.60153 * 179.79003 * 5 4 2 7 7 N 1.31473 * 120.91839 * 180.23513 * 6 5 4 8 8 C 1.46499 * 119.99971 * 174.22517 * 7 6 5 9 9 C 1.53010 * 109.46938 * 114.57141 * 8 7 6 10 10 C 1.52997 * 109.47100 * 300.00425 * 9 8 7 11 11 C 1.53003 * 109.46681 * 60.00219 * 9 8 7 12 12 C 1.53002 * 109.46715 * 180.02562 * 9 8 7 13 13 C 1.50707 * 109.46641 * 180.02562 * 12 9 8 14 14 H 1.08000 * 119.99818 * 359.97438 * 13 12 9 15 15 C 1.37867 * 119.99722 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00230 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47347 * 90.00044 * 17 15 13 19 19 H 1.48505 * 109.47172 * 210.00062 * 17 15 13 20 20 H 1.48500 * 109.47269 * 329.99832 * 17 15 13 21 21 N 1.38032 * 118.16006 * 0.47410 * 6 5 4 22 22 H 0.97000 * 120.30917 * 179.73496 * 21 6 5 23 23 C 1.35660 * 119.37630 * 359.76708 * 21 6 5 24 24 N 1.30405 * 121.41806 * 359.97438 * 23 21 6 25 25 H 1.08997 * 109.47672 * 59.99733 * 1 2 3 26 26 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46968 * 299.99902 * 1 2 3 28 28 H 1.08997 * 109.47112 * 119.99750 * 2 1 3 29 29 H 1.08998 * 109.47713 * 60.00549 * 3 2 1 30 30 H 1.09000 * 109.46506 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47112 * 299.99751 * 3 2 1 32 32 H 1.08006 * 120.69798 * 0.02562 * 5 4 2 33 33 H 1.08993 * 109.47188 * 234.57395 * 8 7 6 34 34 H 1.09002 * 109.46742 * 354.57654 * 8 7 6 35 35 H 1.08997 * 109.47143 * 60.00026 * 10 9 8 36 36 H 1.09003 * 109.46934 * 179.97438 * 10 9 8 37 37 H 1.08994 * 109.46947 * 299.99542 * 10 9 8 38 38 H 1.09003 * 109.47153 * 59.99905 * 11 9 8 39 39 H 1.08999 * 109.46886 * 179.97438 * 11 9 8 40 40 H 1.09000 * 109.47077 * 300.00209 * 11 9 8 41 41 H 1.08993 * 109.47244 * 300.00153 * 12 9 8 42 42 H 1.08995 * 109.47186 * 60.00808 * 12 9 8 43 43 H 0.97001 * 120.00238 * 179.97438 * 16 15 13 44 44 H 1.08004 * 119.28632 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1549 -0.0310 -2.3981 6 6 2.6349 -0.7241 -3.5406 7 7 2.7759 -0.1091 -4.6941 8 6 3.3905 -0.8071 -5.8260 9 6 2.3527 -0.9932 -6.9348 10 6 1.1799 -1.8189 -6.4023 11 6 1.8459 0.3756 -7.3938 12 6 2.9945 -1.7226 -8.1167 13 6 1.9724 -1.9054 -9.2091 14 1 0.9658 -1.5383 -9.0736 15 6 2.3222 -2.5420 -10.3809 16 7 1.4302 -2.7019 -11.3340 17 14 4.0628 -3.1788 -10.6143 18 1 4.1489 -4.5766 -10.1203 19 1 4.4145 -3.1409 -12.0566 20 1 5.0087 -2.3251 -9.8516 21 7 2.9448 -2.0627 -3.4080 22 1 3.2715 -2.5673 -4.1693 23 6 2.7874 -2.6660 -2.2032 24 7 2.3496 -2.0083 -1.1656 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.8965 1.0160 -2.4566 33 1 4.2260 -0.2188 -6.2053 34 1 3.7515 -1.7822 -5.4989 35 1 0.7226 -1.2996 -5.5601 36 1 0.4404 -1.9511 -7.1921 37 1 1.5409 -2.7939 -6.0753 38 1 2.6814 0.9639 -7.7732 39 1 1.1069 0.2431 -8.1840 40 1 1.3887 0.8949 -6.5516 41 1 3.8301 -1.1347 -8.4962 42 1 3.3551 -2.6977 -7.7894 43 1 1.6764 -3.1496 -12.1586 44 1 3.0306 -3.7133 -2.1009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340888788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = 39.820980 kcal Electronic energy + Delta-G solvation = -21760.659692 eV Core-core repulsion = 18712.893964 eV Total energy + Delta-G solvation = -3047.765729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04346 -37.73154 -36.43493 -34.61140 -32.51543 -32.16538 -30.11308 -27.68034 -27.36909 -26.41043 -26.25051 -24.74109 -23.08523 -22.04196 -20.23432 -18.75400 -18.03343 -17.37661 -16.77036 -15.99215 -15.23730 -15.09053 -14.70105 -14.21527 -14.09119 -13.93563 -13.62170 -13.22525 -13.06127 -12.73937 -12.40987 -12.27660 -12.14906 -11.66202 -11.44632 -11.34117 -11.15253 -11.09454 -11.01926 -10.90177 -10.59826 -10.50942 -10.17119 -9.98423 -9.84790 -9.72742 -9.52159 -9.02864 -8.94787 -8.53039 -7.37721 -6.02785 -3.99367 0.78409 1.98028 2.85317 3.27909 3.36577 3.39579 3.62475 3.93041 4.27321 4.44809 4.68142 4.81046 4.96318 5.11514 5.18195 5.29278 5.37134 5.43592 5.51366 5.62348 5.64211 5.65632 5.71449 5.82898 5.88942 6.01527 6.03227 6.03944 6.15881 6.30047 6.37684 6.57374 6.59863 6.65072 6.78471 6.94153 7.07517 7.12252 7.17582 7.30741 7.42579 7.80582 7.90170 8.23669 8.57181 9.03002 9.59810 11.10349 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.003649 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.934327 B = 7671.511332 C = 7900.468122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.148 4.148 4 C 0.145 3.855 5 C -0.194 4.194 6 C 0.380 3.620 7 N -0.564 5.564 8 C 0.059 3.941 9 C -0.045 4.045 10 C -0.125 4.125 11 C -0.117 4.117 12 C -0.004 4.004 13 C -0.508 4.508 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.267 1.267 21 N -0.663 5.663 22 H 0.418 0.582 23 C 0.378 3.622 24 N -0.557 5.557 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.020 0.980 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.016 0.984 42 H 0.006 0.994 43 H 0.262 0.738 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 2.643 23.141 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.206 4.206 4 C 0.027 3.973 5 C -0.219 4.219 6 C 0.112 3.888 7 N -0.290 5.290 8 C -0.071 4.071 9 C -0.046 4.046 10 C -0.182 4.182 11 C -0.174 4.174 12 C -0.042 4.042 13 C -0.546 4.546 14 H 0.095 0.905 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.191 1.191 21 N -0.293 5.293 22 H 0.258 0.742 23 C 0.090 3.910 24 N -0.280 5.280 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.170 3.252 23.259 23.585 hybrid contribution 1.478 -1.262 -1.463 2.433 sum 3.648 1.990 21.796 22.188 Atomic orbital electron populations 1.21806 0.93544 1.02319 1.02191 1.19975 0.96155 0.95275 0.94726 1.21939 1.01346 0.94872 1.02416 1.20590 0.92868 0.89130 0.94693 1.21276 1.08600 1.02042 0.89985 1.20347 0.93779 0.80111 0.94613 1.73298 1.24333 1.33114 0.98227 1.22148 0.97757 0.95238 0.91915 1.20469 0.93968 0.96537 0.93623 1.21724 0.98910 0.97453 1.00108 1.21592 1.00712 0.95082 1.00035 1.19648 0.96676 0.94335 0.93518 1.21122 0.98114 1.36822 0.98499 0.90458 1.25019 0.96785 0.95787 0.95975 1.69910 1.34025 1.43762 1.06723 0.86845 0.86104 0.79480 0.77218 1.20526 1.21460 1.19144 1.44499 1.59489 1.12029 1.13263 0.74197 1.24833 0.87550 0.98529 0.80068 1.67956 1.22062 1.09780 1.28246 0.92267 0.92320 0.92012 0.89416 0.91979 0.92402 0.91808 0.83380 0.90520 0.96200 0.94719 0.91211 0.94873 0.94108 0.92027 0.93706 0.96617 0.97589 0.92846 0.78701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 2 C -0.04 -0.37 3.24 -91.77 -0.30 -0.67 16 3 C -0.15 -1.13 8.62 37.16 0.32 -0.81 16 4 C 0.14 1.62 5.77 -82.67 -0.48 1.15 16 5 C -0.19 -2.44 9.15 -39.07 -0.36 -2.80 16 6 C 0.38 5.38 7.32 -155.64 -1.14 4.24 16 7 N -0.56 -9.38 9.08 -60.06 -0.55 -9.92 16 8 C 0.06 1.03 5.18 -4.04 -0.02 1.01 16 9 C -0.05 -0.91 0.60 -154.50 -0.09 -1.01 16 10 C -0.12 -2.43 8.06 37.16 0.30 -2.13 16 11 C -0.12 -2.40 8.06 37.16 0.30 -2.10 16 12 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 13 C -0.51 -14.11 8.20 -34.44 -0.28 -14.39 16 14 H 0.08 2.31 5.92 -52.49 -0.31 2.00 16 15 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 17 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 21 N -0.66 -7.50 5.28 -13.07 -0.07 -7.57 16 22 H 0.42 4.46 6.40 -40.82 -0.26 4.20 16 23 C 0.38 3.48 12.40 -89.89 -1.11 2.37 16 24 N -0.56 -6.14 10.29 -10.60 -0.11 -6.25 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.50 6.51 -51.93 -0.34 0.16 16 32 H 0.15 1.78 6.31 -52.48 -0.33 1.45 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.02 0.31 5.59 -51.93 -0.29 0.02 16 35 H 0.03 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.07 1.53 6.62 -51.93 -0.34 1.18 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.38 6.62 -51.93 -0.34 1.03 16 40 H 0.04 0.87 7.60 -51.93 -0.39 0.47 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 42 H 0.01 0.14 7.57 -51.93 -0.39 -0.26 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 44 H 0.20 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -32.49 344.64 -9.29 -41.78 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.16 Total: 1.17 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.71 Total: -14.35 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.05 Total: -50.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.49 -9.29 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340888788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.603 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds