Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46744 * 2 1 4 4 C 1.50698 * 109.47003 * 240.00111 * 2 1 3 5 5 C 1.35645 * 119.79506 * 84.72401 * 4 2 1 6 6 C 1.41992 * 118.60153 * 179.79003 * 5 4 2 7 7 N 1.31473 * 120.91839 * 180.23513 * 6 5 4 8 8 C 1.46499 * 119.99971 * 174.22517 * 7 6 5 9 9 C 1.53010 * 109.46938 * 114.57141 * 8 7 6 10 10 C 1.52997 * 109.47100 * 300.00425 * 9 8 7 11 11 C 1.53003 * 109.46681 * 60.00219 * 9 8 7 12 12 C 1.53002 * 109.46715 * 180.02562 * 9 8 7 13 13 C 1.50707 * 109.46641 * 180.02562 * 12 9 8 14 14 H 1.08000 * 119.99818 * 359.97438 * 13 12 9 15 15 C 1.37867 * 119.99722 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00008 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00230 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47347 * 90.00044 * 17 15 13 19 19 H 1.48505 * 109.47172 * 210.00062 * 17 15 13 20 20 H 1.48500 * 109.47269 * 329.99832 * 17 15 13 21 21 N 1.38032 * 118.16006 * 0.47410 * 6 5 4 22 22 H 0.97000 * 120.30917 * 179.73496 * 21 6 5 23 23 C 1.35660 * 119.37630 * 359.76708 * 21 6 5 24 24 N 1.30405 * 121.41806 * 359.97438 * 23 21 6 25 25 H 1.08997 * 109.47672 * 59.99733 * 1 2 3 26 26 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46968 * 299.99902 * 1 2 3 28 28 H 1.08997 * 109.47112 * 119.99750 * 2 1 3 29 29 H 1.08998 * 109.47713 * 60.00549 * 3 2 1 30 30 H 1.09000 * 109.46506 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47112 * 299.99751 * 3 2 1 32 32 H 1.08006 * 120.69798 * 0.02562 * 5 4 2 33 33 H 1.08993 * 109.47188 * 234.57395 * 8 7 6 34 34 H 1.09002 * 109.46742 * 354.57654 * 8 7 6 35 35 H 1.08997 * 109.47143 * 60.00026 * 10 9 8 36 36 H 1.09003 * 109.46934 * 179.97438 * 10 9 8 37 37 H 1.08994 * 109.46947 * 299.99542 * 10 9 8 38 38 H 1.09003 * 109.47153 * 59.99905 * 11 9 8 39 39 H 1.08999 * 109.46886 * 179.97438 * 11 9 8 40 40 H 1.09000 * 109.47077 * 300.00209 * 11 9 8 41 41 H 1.08993 * 109.47244 * 300.00153 * 12 9 8 42 42 H 1.08995 * 109.47186 * 60.00808 * 12 9 8 43 43 H 0.97001 * 120.00238 * 179.97438 * 16 15 13 44 44 H 1.08004 * 119.28632 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1549 -0.0310 -2.3981 6 6 2.6349 -0.7241 -3.5406 7 7 2.7759 -0.1091 -4.6941 8 6 3.3905 -0.8071 -5.8260 9 6 2.3527 -0.9932 -6.9348 10 6 1.1799 -1.8189 -6.4023 11 6 1.8459 0.3756 -7.3938 12 6 2.9945 -1.7226 -8.1167 13 6 1.9724 -1.9054 -9.2091 14 1 0.9658 -1.5383 -9.0736 15 6 2.3222 -2.5420 -10.3809 16 7 1.4302 -2.7019 -11.3340 17 14 4.0628 -3.1788 -10.6143 18 1 4.1489 -4.5766 -10.1203 19 1 4.4145 -3.1409 -12.0566 20 1 5.0087 -2.3251 -9.8516 21 7 2.9448 -2.0627 -3.4080 22 1 3.2715 -2.5673 -4.1693 23 6 2.7874 -2.6660 -2.2032 24 7 2.3496 -2.0083 -1.1656 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.8965 1.0160 -2.4566 33 1 4.2260 -0.2188 -6.2053 34 1 3.7515 -1.7822 -5.4989 35 1 0.7226 -1.2996 -5.5601 36 1 0.4404 -1.9511 -7.1921 37 1 1.5409 -2.7939 -6.0753 38 1 2.6814 0.9639 -7.7732 39 1 1.1069 0.2431 -8.1840 40 1 1.3887 0.8949 -6.5516 41 1 3.8301 -1.1347 -8.4962 42 1 3.3551 -2.6977 -7.7894 43 1 1.6764 -3.1496 -12.1586 44 1 3.0306 -3.7133 -2.1009 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340888788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = 20.905835 kcal Electronic energy + Delta-G solvation = -21761.479915 eV Core-core repulsion = 18712.893964 eV Total energy + Delta-G solvation = -3048.585951 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.96989 -39.11208 -37.41893 -35.75580 -34.39293 -33.23447 -31.27975 -29.56232 -28.07168 -27.99689 -27.45230 -25.76724 -24.56556 -23.29898 -21.15793 -19.69857 -19.53975 -18.91145 -18.37892 -16.91156 -16.29112 -16.19396 -15.94849 -15.68833 -15.48224 -15.10554 -14.82089 -14.48231 -14.26245 -14.05439 -13.94943 -13.64183 -13.01272 -12.91390 -12.85682 -12.71435 -12.62753 -12.31353 -12.23628 -12.14063 -11.95433 -11.83527 -11.72301 -11.52534 -11.24395 -11.17274 -10.86811 -10.77275 -10.72525 -10.21281 -8.43874 -8.24021 -6.25622 -0.07471 1.00000 1.33721 1.37294 1.48126 1.95305 2.37708 2.71028 3.10527 3.19875 3.32753 3.90652 3.99211 4.10357 4.13984 4.19835 4.30164 4.34451 4.42441 4.50878 4.66883 4.76506 4.77883 4.82396 4.85076 4.93036 4.95746 4.99355 5.02664 5.06494 5.21912 5.25005 5.25537 5.33745 5.39997 5.42151 5.42911 5.53734 5.62402 5.67523 5.75661 6.09432 6.37184 6.81009 7.03062 7.18887 7.36951 8.92408 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.003649 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.934327 B = 7671.511332 C = 7900.468122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.043 4.043 3 C -0.145 4.145 4 C 0.161 3.839 5 C -0.226 4.226 6 C 0.387 3.613 7 N -0.607 5.607 8 C 0.072 3.928 9 C -0.046 4.046 10 C -0.111 4.111 11 C -0.108 4.108 12 C 0.000 4.000 13 C -0.507 4.507 14 H 0.039 0.961 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.945 3.055 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.249 1.249 21 N -0.660 5.660 22 H 0.423 0.577 23 C 0.388 3.612 24 N -0.574 5.574 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.034 0.966 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.053 0.947 41 H 0.014 0.986 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 1.500 25.938 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.202 4.202 4 C 0.042 3.958 5 C -0.252 4.252 6 C 0.120 3.880 7 N -0.335 5.335 8 C -0.059 4.059 9 C -0.046 4.046 10 C -0.168 4.168 11 C -0.165 4.165 12 C -0.038 4.038 13 C -0.545 4.545 14 H 0.057 0.943 15 C -0.195 4.195 16 N -0.597 5.597 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.173 1.173 21 N -0.289 5.289 22 H 0.264 0.736 23 C 0.102 3.898 24 N -0.297 5.297 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.967 2.084 26.094 26.476 hybrid contribution 0.804 -0.934 -2.156 2.483 sum 4.771 1.150 23.938 24.436 Atomic orbital electron populations 1.21777 0.92933 1.01990 1.02786 1.20085 0.96545 0.95762 0.93794 1.21913 1.01050 0.94214 1.03051 1.21004 0.90508 0.89303 0.94958 1.21290 1.11253 1.02417 0.90218 1.20569 0.92046 0.81084 0.94273 1.73316 1.27679 1.33733 0.98814 1.21834 0.96241 0.96337 0.91442 1.20406 0.94949 0.95501 0.93779 1.21551 0.97905 0.98332 0.99036 1.21478 0.99830 0.95952 0.99257 1.19585 0.95422 0.95328 0.93442 1.21388 0.97616 1.35643 0.99886 0.94306 1.25962 1.01511 0.96363 0.95663 1.70075 1.36617 1.45453 1.07539 0.85741 0.80553 0.79584 0.77243 1.19009 1.21548 1.17266 1.44586 1.58755 1.11208 1.14313 0.73627 1.25867 0.85215 1.00087 0.78619 1.68074 1.22932 1.09651 1.29013 0.93106 0.93064 0.90039 0.88783 0.90185 0.92823 0.92351 0.83557 0.91364 0.94225 0.93947 0.94648 0.93235 0.94143 0.95155 0.92800 0.96793 0.96246 0.92812 0.73836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.18 71.98 0.66 -1.31 16 2 C -0.04 -0.66 3.24 -11.54 -0.04 -0.70 16 3 C -0.14 -1.94 8.62 71.98 0.62 -1.32 16 4 C 0.16 3.28 5.77 41.66 0.24 3.53 16 5 C -0.23 -5.43 9.15 22.60 0.21 -5.22 16 6 C 0.39 10.33 7.32 134.38 0.98 11.31 16 7 N -0.61 -19.58 9.08 -343.93 -3.12 -22.70 16 8 C 0.07 2.39 5.18 86.38 0.45 2.84 16 9 C -0.05 -1.83 0.60 -52.18 -0.03 -1.86 16 10 C -0.11 -4.32 8.06 71.98 0.58 -3.74 16 11 C -0.11 -4.55 8.06 71.98 0.58 -3.97 16 12 C 0.00 0.00 3.11 29.85 0.09 0.10 16 13 C -0.51 -28.89 8.20 25.60 0.21 -28.68 16 14 H 0.04 2.46 5.92 -2.91 -0.02 2.44 16 15 C 0.00 0.04 5.47 84.65 0.46 0.51 16 16 N -0.96 -60.42 13.96 21.44 0.30 -60.12 16 17 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 21 N -0.66 -12.99 5.28 -195.28 -1.03 -14.03 16 22 H 0.42 7.59 6.40 -92.71 -0.59 7.00 16 23 C 0.39 5.69 12.40 180.09 2.23 7.93 16 24 N -0.57 -10.91 10.29 -187.46 -1.93 -12.84 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.85 6.51 -2.39 -0.02 0.84 16 32 H 0.15 3.48 6.31 -2.91 -0.02 3.46 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.12 5.59 -2.39 -0.01 1.11 16 35 H 0.04 1.56 7.45 -2.39 -0.02 1.54 16 36 H 0.03 1.59 6.62 -2.39 -0.02 1.57 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.03 1.42 6.62 -2.39 -0.02 1.40 16 40 H 0.05 2.14 7.60 -2.39 -0.02 2.12 16 41 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 42 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.25 0.97 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -72.25 344.64 3.69 -68.56 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.33 Total: 15.57 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 7.25 Total: -20.59 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -5.78 Total: -109.69 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -72.25 3.69 -68.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340888788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.466 kcal (2) G-P(sol) polarization free energy of solvation -72.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds