Wall clock time and date at job start Mon Mar 30 2020 02:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47420 * 2 1 4 4 N 1.30411 * 119.28701 * 305.00177 * 3 2 1 5 5 C 1.33775 * 122.03003 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.79754 * 179.97438 * 5 4 3 7 7 C 1.35650 * 120.41016 * 359.97438 * 5 4 3 8 8 C 1.41985 * 118.60137 * 0.25811 * 7 5 4 9 9 N 1.31478 * 120.91705 * 179.74606 * 8 7 5 10 10 C 1.46495 * 119.99862 * 353.71499 * 9 8 7 11 11 C 1.53007 * 109.47063 * 114.39549 * 10 9 8 12 12 C 1.53013 * 109.46485 * 299.99904 * 11 10 9 13 13 C 1.52997 * 109.47092 * 59.99219 * 11 10 9 14 14 C 1.52996 * 109.47526 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.47358 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99778 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99958 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99713 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47273 * 60.00055 * 19 17 15 21 21 H 1.48502 * 109.46837 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47252 * 299.99984 * 19 17 15 23 23 N 1.35661 * 119.29656 * 125.02166 * 3 2 1 24 24 H 0.96992 * 120.30760 * 359.97438 * 23 3 2 25 25 H 1.08994 * 109.47047 * 60.00073 * 1 2 3 26 26 H 1.08994 * 109.47079 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46823 * 300.00462 * 1 2 3 28 28 H 1.08994 * 109.47389 * 239.99708 * 2 1 3 29 29 H 1.09004 * 109.47101 * 119.99718 * 2 1 3 30 30 H 1.09002 * 109.46922 * 270.01754 * 6 5 4 31 31 H 1.08999 * 109.46805 * 30.01495 * 6 5 4 32 32 H 1.08993 * 109.47657 * 150.01987 * 6 5 4 33 33 H 1.07999 * 120.69752 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.47264 * 234.38932 * 10 9 8 35 35 H 1.08997 * 109.47817 * 354.39436 * 10 9 8 36 36 H 1.08998 * 109.46872 * 59.99882 * 12 11 10 37 37 H 1.09004 * 109.46155 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.46603 * 299.99542 * 12 11 10 39 39 H 1.09000 * 109.46933 * 60.00803 * 13 11 10 40 40 H 1.09003 * 109.46867 * 180.02562 * 13 11 10 41 41 H 1.08998 * 109.47704 * 300.00456 * 13 11 10 42 42 H 1.09008 * 109.46748 * 299.99679 * 14 11 10 43 43 H 1.09003 * 109.47128 * 59.99019 * 14 11 10 44 44 H 0.97008 * 119.99236 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.6300 2.2398 -0.9317 5 6 2.0412 3.5117 -0.9844 6 6 1.5444 4.4144 -2.0841 7 6 2.9027 3.9939 -0.0542 8 6 3.3590 3.1198 0.9675 9 7 4.1983 3.5379 1.8892 10 6 4.7823 4.8780 1.7943 11 6 4.2836 5.7355 2.9593 12 6 2.7581 5.8385 2.9000 13 6 4.7000 5.0900 4.2824 14 6 4.8930 7.1353 2.8599 15 6 4.4012 7.9799 4.0069 16 1 3.7223 7.5601 4.7344 17 6 4.8190 9.2883 4.1283 18 7 5.6470 9.7989 3.2433 19 14 4.2088 10.3354 5.5498 20 1 4.6121 9.7094 6.8346 21 1 4.8015 11.6936 5.4541 22 1 2.7284 10.4354 5.4912 23 7 2.8938 1.8203 0.9689 24 1 3.1826 1.1977 1.6542 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2181 4.3507 -2.9386 31 1 0.5444 4.1029 -2.3858 32 1 1.5114 5.4423 -1.7234 33 1 3.2380 5.0198 -0.0925 34 1 5.8690 4.8046 1.8365 35 1 4.4856 5.3379 0.8517 36 1 2.3236 4.8414 2.9705 37 1 2.4028 6.4497 3.7297 38 1 2.4614 6.2983 1.9573 39 1 5.7867 5.0165 4.3246 40 1 4.3443 5.7006 5.1123 41 1 4.2654 4.0929 4.3530 42 1 5.9798 7.0622 2.9018 43 1 4.5959 7.5948 1.9171 44 1 5.9411 10.7193 3.3290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340922989.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:09 Heat of formation + Delta-G solvation = 35.971717 kcal Electronic energy + Delta-G solvation = -21738.992411 eV Core-core repulsion = 18691.059766 eV Total energy + Delta-G solvation = -3047.932645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99484 -37.41768 -35.31490 -35.11646 -32.85378 -31.91780 -30.40272 -28.02346 -26.87641 -26.22498 -26.04805 -24.87082 -22.90775 -22.09602 -20.59404 -18.50418 -17.82142 -17.33377 -16.18341 -15.68247 -15.44311 -14.83302 -14.55389 -14.38747 -13.82548 -13.61248 -13.34901 -13.22871 -12.84992 -12.56520 -12.53535 -12.35494 -11.97954 -11.95287 -11.74001 -11.57248 -11.13506 -10.94264 -10.83591 -10.77043 -10.48400 -10.44351 -10.13554 -9.95172 -9.82276 -9.60895 -9.13954 -8.83729 -8.63253 -8.28239 -7.24261 -5.92877 -3.92884 0.83034 2.06309 2.67617 3.36813 3.41010 3.43688 3.67044 3.80130 4.40199 4.51348 4.73142 4.83169 4.87995 5.12339 5.22327 5.31725 5.42663 5.45936 5.50309 5.55730 5.58633 5.79313 5.81654 5.91563 5.94788 6.09730 6.12412 6.24703 6.30843 6.53318 6.59904 6.73377 6.76835 6.87778 6.89732 7.07239 7.26286 7.31053 7.39587 7.73716 7.89239 7.99045 8.07182 8.33986 8.53486 9.11951 9.69483 11.18709 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027872 B = 0.003695 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.342729 B = 7575.343910 C = 7884.090568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C 0.404 3.596 4 N -0.554 5.554 5 C 0.147 3.853 6 C -0.102 4.102 7 C -0.260 4.260 8 C 0.379 3.621 9 N -0.585 5.585 10 C 0.075 3.925 11 C -0.055 4.055 12 C -0.120 4.120 13 C -0.114 4.114 14 C 0.035 3.965 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 N -0.617 5.617 24 H 0.416 0.584 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.060 0.940 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.038 0.962 42 H 0.015 0.985 43 H 0.013 0.987 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.053 -19.593 -9.218 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C 0.136 3.864 4 N -0.279 5.279 5 C 0.030 3.970 6 C -0.160 4.160 7 C -0.286 4.286 8 C 0.108 3.892 9 N -0.310 5.310 10 C -0.055 4.055 11 C -0.055 4.055 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.003 4.003 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 N -0.242 5.242 24 H 0.254 0.746 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.167 0.833 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.975 -19.585 -9.132 23.399 hybrid contribution 0.292 1.419 1.096 1.817 sum -8.683 -18.166 -8.036 21.678 Atomic orbital electron populations 1.21678 0.92478 1.02391 1.03514 1.20630 0.98223 0.87658 1.04473 1.23058 0.84250 0.96202 0.82857 1.67763 1.30616 1.04726 1.24751 1.20672 0.91752 0.90053 0.94538 1.20691 1.01944 0.97557 0.95791 1.22348 1.05414 1.02541 0.98313 1.18927 0.93954 0.83959 0.92363 1.72277 1.15733 1.19486 1.23491 1.22189 0.98420 0.86424 0.98488 1.20670 0.95057 0.96572 0.93220 1.21680 0.95964 0.98828 1.01283 1.21581 0.99832 0.98472 0.97292 1.19127 0.95670 0.88518 0.96971 1.21201 1.27221 0.95999 1.10060 0.92433 1.25008 0.95341 0.98050 0.96147 1.69960 1.33633 1.14737 1.35453 0.86726 0.79019 0.79547 0.83123 1.20325 1.21406 1.20364 1.42736 1.41997 1.11268 1.28182 0.74619 0.90752 0.91575 0.92522 0.87973 0.89644 0.90439 0.90615 0.90478 0.83332 0.90919 0.94261 0.95304 0.92110 0.94359 0.94153 0.92722 0.94273 0.96657 0.96904 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.76 37.16 0.36 -0.47 16 2 C -0.07 -0.41 6.43 -27.88 -0.18 -0.59 16 3 C 0.40 4.14 7.15 -154.92 -1.11 3.03 16 4 N -0.55 -6.74 9.76 -6.81 -0.07 -6.80 16 5 C 0.15 1.95 6.76 -82.67 -0.56 1.39 16 6 C -0.10 -1.07 10.18 36.01 0.37 -0.71 16 7 C -0.26 -3.94 8.86 -39.07 -0.35 -4.29 16 8 C 0.38 5.89 7.53 -155.65 -1.17 4.71 16 9 N -0.59 -10.44 9.18 -60.07 -0.55 -10.99 16 10 C 0.07 1.47 5.10 -4.04 -0.02 1.45 16 11 C -0.05 -1.19 0.60 -154.50 -0.09 -1.29 16 12 C -0.12 -2.53 8.06 37.16 0.30 -2.23 16 13 C -0.11 -2.44 8.06 37.16 0.30 -2.14 16 14 C 0.03 0.91 4.04 -27.89 -0.11 0.80 16 15 C -0.51 -14.33 7.65 -34.44 -0.26 -14.59 16 16 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 19 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 N -0.62 -7.19 5.42 -9.29 -0.05 -7.24 16 24 H 0.42 3.88 8.65 -40.82 -0.35 3.53 16 25 H 0.07 0.52 7.93 -51.93 -0.41 0.11 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.32 7.90 -51.93 -0.41 -0.09 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 33 H 0.15 2.38 5.90 -52.49 -0.31 2.07 16 34 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.04 0.76 5.30 -51.93 -0.28 0.48 16 36 H 0.03 0.57 7.44 -51.93 -0.39 0.18 16 37 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 1.22 6.62 -51.93 -0.34 0.87 16 41 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -33.04 351.58 -9.59 -42.63 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.31 Total: 0.09 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.62 Total: -13.42 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.07 Total: -51.63 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.04 -9.59 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340922989.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.599 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds