Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47446 * 2 1 4 4 C 1.35651 * 119.79254 * 124.99630 * 3 2 1 5 5 C 1.41982 * 118.59616 * 179.72574 * 4 3 2 6 6 N 1.31478 * 120.91383 * 179.97438 * 5 4 3 7 7 C 1.46505 * 120.00011 * 173.98046 * 6 5 4 8 8 C 1.52999 * 109.47212 * 114.56678 * 7 6 5 9 9 C 1.53003 * 109.47228 * 300.00083 * 8 7 6 10 10 C 1.53005 * 109.46902 * 60.00244 * 8 7 6 11 11 C 1.53005 * 109.47270 * 180.02562 * 8 7 6 12 12 C 1.50692 * 109.47039 * 180.02562 * 11 8 7 13 13 H 1.08001 * 120.00429 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99500 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00208 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99559 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47478 * 90.00032 * 16 14 12 18 18 H 1.48507 * 109.46881 * 209.99903 * 16 14 12 19 19 H 1.48496 * 109.47568 * 329.99758 * 16 14 12 20 20 N 1.38029 * 118.16949 * 359.97438 * 5 4 3 21 21 H 0.97003 * 120.31683 * 179.97438 * 20 5 4 22 22 C 1.35662 * 119.37591 * 0.02562 * 20 5 4 23 23 C 1.50700 * 119.29501 * 180.02562 * 22 20 5 24 24 N 1.30404 * 121.41344 * 359.97438 * 22 20 5 25 25 H 1.08995 * 109.47334 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47273 * 300.00056 * 1 2 3 27 27 H 1.09000 * 109.47127 * 59.99848 * 1 2 3 28 28 H 1.09002 * 109.47273 * 239.99944 * 2 1 3 29 29 H 1.09000 * 109.47127 * 120.00152 * 2 1 3 30 30 H 1.07994 * 120.70079 * 359.74414 * 4 3 2 31 31 H 1.08998 * 109.47099 * 234.56795 * 7 6 5 32 32 H 1.09002 * 109.46590 * 354.56649 * 7 6 5 33 33 H 1.08999 * 109.46948 * 60.00260 * 9 8 7 34 34 H 1.09001 * 109.47076 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47090 * 300.00067 * 9 8 7 36 36 H 1.08998 * 109.47347 * 59.99921 * 10 8 7 37 37 H 1.09001 * 109.47166 * 179.97438 * 10 8 7 38 38 H 1.09003 * 109.46933 * 299.99860 * 10 8 7 39 39 H 1.09002 * 109.46776 * 300.00827 * 11 8 7 40 40 H 1.09002 * 109.46586 * 59.99939 * 11 8 7 41 41 H 0.97001 * 119.99728 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.47402 * 89.99588 * 23 22 20 43 43 H 1.09003 * 109.47210 * 209.99724 * 23 22 20 44 44 H 1.08997 * 109.46869 * 329.99757 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8936 1.8311 0.9644 5 6 3.3554 3.1735 0.9367 6 7 4.1904 3.6195 1.8491 7 6 4.7569 4.9652 1.7284 8 6 4.2521 5.8363 2.8804 9 6 2.7252 5.9189 2.8262 10 6 4.6824 5.2194 4.2128 11 6 4.8432 7.2418 2.7540 12 6 4.3464 8.0996 3.8891 13 1 3.6764 7.6838 4.6271 14 6 4.7473 9.4153 3.9854 15 7 5.5635 9.9215 3.0870 16 14 4.1321 10.4784 5.3927 17 1 5.0670 10.3689 6.5413 18 1 4.0576 11.8935 4.9483 19 1 2.7825 10.0183 5.8075 20 7 2.9037 3.9972 -0.0745 21 1 3.1989 4.9200 -0.1231 22 6 2.0421 3.5045 -0.9994 23 6 1.5505 4.4054 -2.1029 24 7 1.6309 2.2678 -0.9545 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2213 1.1511 1.7367 31 1 5.8446 4.9063 1.7671 32 1 4.4503 5.4046 0.7792 33 1 2.3038 4.9178 2.9160 34 1 2.3656 6.5392 3.6472 35 1 2.4187 6.3584 1.8770 36 1 5.7701 5.1605 4.2515 37 1 4.3232 5.8402 5.0336 38 1 4.2609 4.2181 4.3026 39 1 5.9310 7.1832 2.7923 40 1 4.5362 7.6810 1.8048 41 1 5.8458 10.8471 3.1550 42 1 2.2256 4.3367 -2.9560 43 1 0.5499 4.0964 -2.4056 44 1 1.5204 5.4346 -1.7454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340927429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = 33.388542 kcal Electronic energy + Delta-G solvation = -21755.104219 eV Core-core repulsion = 18707.059559 eV Total energy + Delta-G solvation = -3048.044660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02992 -37.51284 -35.73220 -34.64675 -32.40934 -31.77758 -30.59382 -28.77343 -27.01292 -26.38687 -26.19792 -24.26077 -22.76491 -22.18278 -20.71806 -18.59312 -18.03280 -17.17795 -16.21479 -15.59663 -15.47680 -14.70822 -14.49803 -14.35047 -13.86227 -13.77454 -13.45645 -13.16288 -12.94966 -12.77821 -12.68697 -12.34278 -12.04014 -11.98307 -11.46669 -11.37734 -11.13439 -10.99705 -10.92661 -10.79256 -10.54094 -10.49255 -10.18758 -9.96258 -9.88639 -9.72778 -9.31214 -8.90848 -8.83275 -8.34630 -7.28130 -5.99144 -3.99380 0.83862 2.03880 2.87015 3.31614 3.38050 3.41130 3.66480 3.88528 4.32893 4.46741 4.66380 5.01217 5.05848 5.15179 5.20143 5.26503 5.31898 5.36695 5.52940 5.55622 5.70916 5.73193 5.80187 5.82883 5.94524 5.99765 6.11087 6.14781 6.19172 6.41656 6.47760 6.67370 6.69130 6.76219 6.82291 7.02963 7.17240 7.24847 7.31618 7.65068 7.79792 7.99262 8.00618 8.31445 8.46736 9.05589 9.63590 11.12386 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.003695 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.484928 B = 7575.187374 C = 7875.127228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C 0.144 3.856 4 C -0.204 4.204 5 C 0.382 3.618 6 N -0.565 5.565 7 C 0.062 3.938 8 C -0.055 4.055 9 C -0.123 4.123 10 C -0.115 4.115 11 C 0.034 3.966 12 C -0.507 4.507 13 H 0.059 0.941 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.275 1.275 20 N -0.658 5.658 21 H 0.417 0.583 22 C 0.401 3.599 23 C -0.110 4.110 24 N -0.555 5.555 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.259 0.741 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 -16.018 -10.517 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C 0.027 3.973 4 C -0.229 4.229 5 C 0.114 3.886 6 N -0.291 5.291 7 C -0.068 4.068 8 C -0.056 4.056 9 C -0.180 4.180 10 C -0.173 4.173 11 C -0.003 4.003 12 C -0.545 4.545 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.289 5.289 21 H 0.257 0.743 22 C 0.134 3.866 23 C -0.169 4.169 24 N -0.281 5.281 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.164 0.836 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.681 -16.548 -10.161 21.271 hybrid contribution 0.337 2.051 0.747 2.208 sum -8.344 -14.497 -9.414 19.194 Atomic orbital electron populations 1.21634 0.94206 1.01428 1.02687 1.20416 0.96914 0.90288 1.02976 1.20634 0.91615 0.95574 0.89519 1.21242 1.04363 0.93515 1.03809 1.20330 0.93106 0.90983 0.84188 1.73299 1.16266 1.17439 1.22089 1.22119 0.99507 0.88012 0.97170 1.20681 0.94874 0.96539 0.93472 1.21711 0.96057 0.99137 1.01111 1.21578 0.99943 0.98788 0.96949 1.19140 0.95848 0.88425 0.96906 1.21227 1.27883 0.95291 1.10133 0.92324 1.25012 0.95321 0.98121 0.96092 1.69963 1.34326 1.14506 1.34975 0.86655 0.79254 0.79747 0.82723 1.20708 1.21346 1.19946 1.44398 1.42067 1.16293 1.26109 0.74260 1.23090 0.84208 0.91107 0.88197 1.20929 1.03827 0.97310 0.94801 1.67801 1.30841 1.01479 1.27932 0.92566 0.92909 0.91595 0.90163 0.90322 0.83625 0.90495 0.96216 0.94955 0.91749 0.94864 0.94058 0.92593 0.93932 0.96597 0.97091 0.93138 0.88696 0.88086 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.78 37.16 0.36 -0.83 16 2 C -0.07 -0.61 6.33 -27.89 -0.18 -0.79 16 3 C 0.14 1.74 6.14 -82.67 -0.51 1.23 16 4 C -0.20 -2.78 9.68 -39.07 -0.38 -3.15 16 5 C 0.38 5.89 7.32 -155.64 -1.14 4.75 16 6 N -0.57 -10.05 9.08 -60.06 -0.55 -10.59 16 7 C 0.06 1.16 5.18 -4.04 -0.02 1.14 16 8 C -0.06 -1.16 0.60 -154.50 -0.09 -1.26 16 9 C -0.12 -2.47 8.06 37.16 0.30 -2.17 16 10 C -0.12 -2.42 8.06 37.16 0.30 -2.12 16 11 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 12 C -0.51 -14.03 7.65 -34.44 -0.26 -14.29 16 13 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 N -0.66 -8.58 5.27 -9.30 -0.05 -8.63 16 21 H 0.42 5.27 6.29 -40.82 -0.26 5.02 16 22 C 0.40 4.47 7.74 -154.93 -1.20 3.27 16 23 C -0.11 -0.77 10.26 36.01 0.37 -0.40 16 24 N -0.56 -6.68 9.82 -6.81 -0.07 -6.75 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 7.96 -51.93 -0.41 0.18 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 30 H 0.15 1.84 7.93 -52.49 -0.42 1.42 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.02 0.34 5.59 -51.93 -0.29 0.05 16 33 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 34 H 0.06 1.39 6.62 -51.93 -0.34 1.04 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 38 H 0.04 0.84 7.60 -51.93 -0.39 0.45 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -31.96 352.10 -9.63 -41.59 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.34 Total: 0.83 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.66 Total: -12.39 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.08 Total: -52.03 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.96 -9.63 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340927429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.983 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds