Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47446 * 2 1 4 4 C 1.35651 * 119.79254 * 124.99630 * 3 2 1 5 5 C 1.41982 * 118.59616 * 179.72574 * 4 3 2 6 6 N 1.31478 * 120.91383 * 179.97438 * 5 4 3 7 7 C 1.46505 * 120.00011 * 173.98046 * 6 5 4 8 8 C 1.52999 * 109.47212 * 114.56678 * 7 6 5 9 9 C 1.53003 * 109.47228 * 300.00083 * 8 7 6 10 10 C 1.53005 * 109.46902 * 60.00244 * 8 7 6 11 11 C 1.53005 * 109.47270 * 180.02562 * 8 7 6 12 12 C 1.50692 * 109.47039 * 180.02562 * 11 8 7 13 13 H 1.08001 * 120.00429 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99500 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00208 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99559 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47478 * 90.00032 * 16 14 12 18 18 H 1.48507 * 109.46881 * 209.99903 * 16 14 12 19 19 H 1.48496 * 109.47568 * 329.99758 * 16 14 12 20 20 N 1.38029 * 118.16949 * 359.97438 * 5 4 3 21 21 H 0.97003 * 120.31683 * 179.97438 * 20 5 4 22 22 C 1.35662 * 119.37591 * 0.02562 * 20 5 4 23 23 C 1.50700 * 119.29501 * 180.02562 * 22 20 5 24 24 N 1.30404 * 121.41344 * 359.97438 * 22 20 5 25 25 H 1.08995 * 109.47334 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47273 * 300.00056 * 1 2 3 27 27 H 1.09000 * 109.47127 * 59.99848 * 1 2 3 28 28 H 1.09002 * 109.47273 * 239.99944 * 2 1 3 29 29 H 1.09000 * 109.47127 * 120.00152 * 2 1 3 30 30 H 1.07994 * 120.70079 * 359.74414 * 4 3 2 31 31 H 1.08998 * 109.47099 * 234.56795 * 7 6 5 32 32 H 1.09002 * 109.46590 * 354.56649 * 7 6 5 33 33 H 1.08999 * 109.46948 * 60.00260 * 9 8 7 34 34 H 1.09001 * 109.47076 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47090 * 300.00067 * 9 8 7 36 36 H 1.08998 * 109.47347 * 59.99921 * 10 8 7 37 37 H 1.09001 * 109.47166 * 179.97438 * 10 8 7 38 38 H 1.09003 * 109.46933 * 299.99860 * 10 8 7 39 39 H 1.09002 * 109.46776 * 300.00827 * 11 8 7 40 40 H 1.09002 * 109.46586 * 59.99939 * 11 8 7 41 41 H 0.97001 * 119.99728 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.47402 * 89.99588 * 23 22 20 43 43 H 1.09003 * 109.47210 * 209.99724 * 23 22 20 44 44 H 1.08997 * 109.46869 * 329.99757 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8936 1.8311 0.9644 5 6 3.3554 3.1735 0.9367 6 7 4.1904 3.6195 1.8491 7 6 4.7569 4.9652 1.7284 8 6 4.2521 5.8363 2.8804 9 6 2.7252 5.9189 2.8262 10 6 4.6824 5.2194 4.2128 11 6 4.8432 7.2418 2.7540 12 6 4.3464 8.0996 3.8891 13 1 3.6764 7.6838 4.6271 14 6 4.7473 9.4153 3.9854 15 7 5.5635 9.9215 3.0870 16 14 4.1321 10.4784 5.3927 17 1 5.0670 10.3689 6.5413 18 1 4.0576 11.8935 4.9483 19 1 2.7825 10.0183 5.8075 20 7 2.9037 3.9972 -0.0745 21 1 3.1989 4.9200 -0.1231 22 6 2.0421 3.5045 -0.9994 23 6 1.5505 4.4054 -2.1029 24 7 1.6309 2.2678 -0.9545 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2213 1.1511 1.7367 31 1 5.8446 4.9063 1.7671 32 1 4.4503 5.4046 0.7792 33 1 2.3038 4.9178 2.9160 34 1 2.3656 6.5392 3.6472 35 1 2.4187 6.3584 1.8770 36 1 5.7701 5.1605 4.2515 37 1 4.3232 5.8402 5.0336 38 1 4.2609 4.2181 4.3026 39 1 5.9310 7.1832 2.7923 40 1 4.5362 7.6810 1.8048 41 1 5.8458 10.8471 3.1550 42 1 2.2256 4.3367 -2.9560 43 1 0.5499 4.0964 -2.4056 44 1 1.5204 5.4346 -1.7454 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340927429.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = 15.362217 kcal Electronic energy + Delta-G solvation = -21755.885899 eV Core-core repulsion = 18707.059559 eV Total energy + Delta-G solvation = -3048.826340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06770 -39.04557 -36.85412 -35.80259 -34.42986 -32.62909 -31.76602 -29.64316 -28.98388 -28.03626 -27.54873 -25.59655 -24.39624 -23.06159 -21.81991 -19.80665 -19.48227 -18.47300 -18.22224 -16.76832 -16.53853 -16.33912 -15.65481 -15.47587 -15.14303 -15.13213 -14.75196 -14.37729 -14.00732 -13.96733 -13.86299 -13.55664 -13.35491 -13.20405 -12.91372 -12.73758 -12.68296 -12.53323 -12.37319 -12.18851 -12.14437 -12.05300 -11.71346 -11.54136 -11.15700 -11.11006 -10.81176 -10.78550 -10.54036 -10.24992 -8.46094 -8.16660 -6.24684 -0.13329 0.94104 1.38516 1.39317 1.49727 1.83653 2.40986 2.64014 3.06861 3.16150 3.29290 3.76565 3.95132 4.14632 4.21447 4.24068 4.34437 4.41543 4.48852 4.51549 4.59466 4.66622 4.75291 4.79886 4.85400 4.92797 4.96107 5.05523 5.06528 5.09004 5.12154 5.18703 5.30478 5.38334 5.43847 5.44211 5.45927 5.56033 5.66318 5.77354 5.86395 6.02995 6.30467 6.88371 7.00291 7.14248 7.42550 8.94643 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.003695 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.484928 B = 7575.187374 C = 7875.127228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C 0.160 3.840 4 C -0.238 4.238 5 C 0.389 3.611 6 N -0.604 5.604 7 C 0.074 3.926 8 C -0.052 4.052 9 C -0.109 4.109 10 C -0.106 4.106 11 C 0.044 3.956 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.265 1.265 20 N -0.658 5.658 21 H 0.418 0.582 22 C 0.401 3.599 23 C -0.108 4.108 24 N -0.564 5.564 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.032 0.968 37 H 0.041 0.959 38 H 0.054 0.946 39 H -0.015 1.015 40 H -0.008 1.008 41 H 0.261 0.739 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 -17.074 -11.271 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C 0.042 3.958 4 C -0.264 4.264 5 C 0.122 3.878 6 N -0.333 5.333 7 C -0.056 4.056 8 C -0.053 4.053 9 C -0.166 4.166 10 C -0.163 4.163 11 C 0.006 3.994 12 C -0.556 4.556 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.189 1.189 20 N -0.287 5.287 21 H 0.259 0.741 22 C 0.136 3.864 23 C -0.166 4.166 24 N -0.288 5.288 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.004 0.996 40 H 0.010 0.990 41 H 0.070 0.930 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.624 -17.609 -10.944 23.296 hybrid contribution 0.844 2.277 0.814 2.561 sum -9.780 -15.332 -10.130 20.816 Atomic orbital electron populations 1.21599 0.93527 1.02563 1.01802 1.20563 0.97342 0.88458 1.04324 1.21164 0.89693 0.96848 0.88141 1.21336 1.06481 0.93042 1.05494 1.20650 0.91636 0.91722 0.83746 1.73309 1.19185 1.16450 1.24317 1.21785 0.98611 0.88865 0.96345 1.20552 0.95484 0.94434 0.94828 1.21538 0.94992 0.99316 1.00750 1.21469 0.99405 0.99076 0.96357 1.18982 0.93995 0.90989 0.95405 1.21560 1.27633 0.95802 1.10570 0.92084 1.25875 0.95520 0.99641 0.98681 1.70091 1.35614 1.14961 1.36883 0.85590 0.79043 0.77875 0.79426 1.20211 1.20843 1.18901 1.44510 1.42037 1.16192 1.25982 0.74121 1.23986 0.82842 0.91470 0.88147 1.21123 1.04763 0.96897 0.93842 1.67959 1.31064 1.01848 1.27979 0.90497 0.93896 0.92301 0.88826 0.88941 0.83178 0.92199 0.95310 0.93948 0.93431 0.94145 0.94832 0.93959 0.92712 0.99649 0.99001 0.93012 0.86721 0.86725 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.78 71.98 0.70 -1.26 16 2 C -0.07 -1.07 6.33 29.85 0.19 -0.88 16 3 C 0.16 3.56 6.14 41.66 0.26 3.82 16 4 C -0.24 -6.22 9.68 22.60 0.22 -6.01 16 5 C 0.39 11.74 7.32 134.38 0.98 12.72 16 6 N -0.60 -21.51 9.08 -343.94 -3.12 -24.63 16 7 C 0.07 2.84 5.18 86.38 0.45 3.29 16 8 C -0.05 -2.25 0.60 -52.18 -0.03 -2.29 16 9 C -0.11 -4.34 8.06 71.98 0.58 -3.76 16 10 C -0.11 -4.52 8.06 71.98 0.58 -3.94 16 11 C 0.04 2.31 4.04 29.85 0.12 2.43 16 12 C -0.52 -29.12 7.65 25.60 0.20 -28.92 16 13 H 0.06 3.35 5.68 -2.91 -0.02 3.33 16 14 C 0.00 0.00 5.46 84.66 0.46 0.46 16 15 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 16 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 20 N -0.66 -16.34 5.27 -183.32 -0.97 -17.31 16 21 H 0.42 10.16 6.29 -92.71 -0.58 9.58 16 22 C 0.40 8.09 7.74 137.96 1.07 9.15 16 23 C -0.11 -1.20 10.26 71.24 0.73 -0.46 16 24 N -0.56 -12.29 9.82 -175.45 -1.72 -14.02 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.93 7.96 -2.39 -0.02 0.91 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.20 7.86 -2.39 -0.02 1.18 16 30 H 0.15 3.69 7.93 -2.91 -0.02 3.67 16 31 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.03 1.01 5.59 -2.39 -0.01 0.99 16 33 H 0.04 1.59 7.45 -2.39 -0.02 1.58 16 34 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.87 6.62 -2.39 -0.02 1.86 16 38 H 0.05 2.18 7.60 -2.39 -0.02 2.17 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -69.25 352.10 3.40 -65.85 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.40 Total: 15.53 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 6.51 Total: -15.64 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -5.53 Total: -112.47 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -69.25 3.40 -65.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340927429.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.215 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds