Wall clock time and date at job start Mon Mar 30 2020 02:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30407 * 119.29284 * 2 1 4 4 C 1.33770 * 122.03007 * 179.97438 * 3 2 1 5 5 C 1.50707 * 119.79218 * 179.97438 * 4 3 2 6 6 C 1.35641 * 120.41854 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.70646 * 180.02562 * 6 4 3 8 8 C 1.41991 * 118.59489 * 0.02562 * 6 4 3 9 9 N 1.31475 * 120.91882 * 180.02562 * 8 6 4 10 10 C 1.46495 * 120.00115 * 173.99800 * 9 8 6 11 11 C 1.53000 * 109.47240 * 114.59305 * 10 9 8 12 12 C 1.53000 * 109.46852 * 300.00014 * 11 10 9 13 13 C 1.53005 * 109.47250 * 59.99764 * 11 10 9 14 14 C 1.53000 * 109.47261 * 179.97438 * 11 10 9 15 15 C 1.50696 * 109.46954 * 179.97438 * 14 11 10 16 16 H 1.08001 * 120.00606 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00015 * 180.02562 * 15 14 11 18 18 N 1.31518 * 120.00064 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00302 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47050 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47263 * 119.99880 * 19 17 15 22 22 H 1.48499 * 109.46781 * 239.99865 * 19 17 15 23 23 N 1.35653 * 119.28971 * 179.73244 * 2 1 3 24 24 H 0.97001 * 120.31773 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47706 * 89.99889 * 1 2 3 26 26 H 1.09003 * 109.46977 * 329.99606 * 1 2 3 27 27 H 1.09004 * 109.47388 * 209.99986 * 1 2 3 28 28 H 1.09004 * 109.46934 * 90.00033 * 5 4 3 29 29 H 1.08999 * 109.47211 * 210.00037 * 5 4 3 30 30 H 1.09002 * 109.46996 * 329.99985 * 5 4 3 31 31 H 1.09008 * 109.46916 * 89.99872 * 7 6 4 32 32 H 1.09001 * 109.47012 * 209.99831 * 7 6 4 33 33 H 1.08995 * 109.47347 * 330.00554 * 7 6 4 34 34 H 1.09005 * 109.47145 * 234.59366 * 10 9 8 35 35 H 1.08997 * 109.47417 * 354.58863 * 10 9 8 36 36 H 1.09003 * 109.47273 * 60.00184 * 12 11 10 37 37 H 1.09003 * 109.46876 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47171 * 299.99534 * 12 11 10 39 39 H 1.09005 * 109.46804 * 60.00142 * 13 11 10 40 40 H 1.08996 * 109.47175 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.46658 * 300.00361 * 13 11 10 42 42 H 1.08994 * 109.47095 * 299.99767 * 14 11 10 43 43 H 1.09006 * 109.46827 * 60.00053 * 14 11 10 44 44 H 0.96994 * 120.00142 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1450 1.1373 0.0000 4 6 3.4812 1.2012 0.0005 5 6 4.1667 2.5434 -0.0001 6 6 4.2230 0.0656 0.0005 7 6 5.7287 0.1300 0.0017 8 6 3.5510 -1.1852 -0.0006 9 7 4.2248 -2.3141 -0.0001 10 6 3.5167 -3.5898 0.1314 11 6 3.6767 -4.3973 -1.1583 12 6 3.0911 -3.6073 -2.3304 13 6 5.1619 -4.6623 -1.4132 14 6 2.9377 -5.7299 -1.0207 15 6 3.0948 -6.5249 -2.2912 16 1 3.6651 -6.1204 -3.1144 17 6 2.5104 -7.7687 -2.4028 18 7 1.8155 -8.2611 -1.4007 19 14 2.7057 -8.7545 -3.9775 20 1 3.5266 -7.9837 -4.9455 21 1 3.3776 -10.0437 -3.6743 22 1 1.3677 -9.0196 -4.5646 23 7 2.1706 -1.1831 0.0055 24 1 1.6799 -2.0198 0.0098 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5139 27 1 -0.3634 -0.8900 0.5138 28 1 4.3315 2.8676 1.0275 29 1 5.1247 2.4618 -0.5135 30 1 3.5395 3.2714 -0.5147 31 1 6.0909 0.1451 1.0297 32 1 6.1301 -0.7434 -0.5123 33 1 6.0540 1.0350 -0.5114 34 1 3.9339 -4.1525 0.9666 35 1 2.4587 -3.4010 0.3130 36 1 3.6180 -2.6582 -2.4283 37 1 3.2055 -4.1824 -3.2493 38 1 2.0330 -3.4186 -2.1489 39 1 5.5791 -5.2250 -0.5780 40 1 5.2759 -5.2371 -2.3322 41 1 5.6887 -3.7131 -1.5110 42 1 3.3552 -6.2924 -0.1857 43 1 1.8795 -5.5414 -0.8389 44 1 1.4048 -9.1363 -1.4791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340943758.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:56 Heat of formation + Delta-G solvation = 18.239855 kcal Electronic energy + Delta-G solvation = -22049.250244 eV Core-core repulsion = 19000.548688 eV Total energy + Delta-G solvation = -3048.701557 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12135 -39.02606 -36.64946 -36.22641 -34.48203 -32.22367 -30.98199 -30.15147 -28.99857 -28.03906 -27.54685 -26.11504 -24.84173 -22.90627 -22.09152 -19.77094 -19.04165 -18.65107 -18.31253 -16.76260 -16.53591 -16.25993 -15.48543 -15.43378 -15.08105 -14.60801 -14.48341 -14.37487 -14.01313 -13.92733 -13.78414 -13.62638 -13.32244 -13.23132 -13.04463 -12.86327 -12.72701 -12.65166 -12.53913 -12.37376 -12.21914 -12.07815 -11.82093 -11.54789 -11.12319 -11.05183 -10.81167 -10.62360 -10.54721 -10.21984 -8.35013 -8.16468 -6.24974 -0.13621 0.94596 1.37268 1.38788 1.50796 1.83934 2.40727 2.61334 3.09495 3.15942 3.32215 3.80195 3.93157 4.11963 4.17766 4.25586 4.39066 4.45422 4.50298 4.59539 4.65936 4.74314 4.77993 4.80538 4.84705 4.92684 4.96895 5.00742 5.05354 5.06540 5.09258 5.21033 5.31494 5.38069 5.44175 5.44656 5.53068 5.60308 5.65119 5.77259 5.86340 6.05691 6.30286 6.88361 7.01033 7.14850 7.42410 8.94540 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.004074 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.809185 B = 6872.043068 C = 7421.135563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.393 3.607 3 N -0.566 5.566 4 C 0.142 3.858 5 C -0.099 4.099 6 C -0.206 4.206 7 C -0.079 4.079 8 C 0.388 3.612 9 N -0.594 5.594 10 C 0.074 3.926 11 C -0.051 4.051 12 C -0.108 4.108 13 C -0.105 4.105 14 C 0.043 3.957 15 C -0.516 4.516 16 H 0.061 0.939 17 C 0.000 4.000 18 N -0.935 5.935 19 Si 0.955 3.045 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.279 1.279 23 N -0.659 5.659 24 H 0.418 0.582 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.041 0.959 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.041 0.959 41 H 0.055 0.945 42 H -0.015 1.015 43 H -0.009 1.009 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 21.943 3.191 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.291 5.291 4 C 0.023 3.977 5 C -0.156 4.156 6 C -0.214 4.214 7 C -0.136 4.136 8 C 0.121 3.879 9 N -0.323 5.323 10 C -0.057 4.057 11 C -0.051 4.051 12 C -0.165 4.165 13 C -0.162 4.162 14 C 0.006 3.994 15 C -0.555 4.555 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.781 3.219 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.205 1.205 23 N -0.288 5.288 24 H 0.258 0.742 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.004 0.996 43 H 0.009 0.991 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.457 22.208 3.193 22.441 hybrid contribution -0.745 -2.509 -0.435 2.653 sum -0.289 19.699 2.758 19.894 Atomic orbital electron populations 1.21099 0.82761 1.06485 1.06162 1.23921 0.97496 0.80424 0.85421 1.67995 1.10152 1.24193 1.26713 1.21085 0.88607 0.96609 0.91369 1.20826 1.00363 0.90293 1.04082 1.20131 0.98898 0.88769 1.13574 1.20399 0.88193 1.02847 1.02188 1.20552 0.79415 0.95483 0.92459 1.73281 1.32286 0.96292 1.30396 1.21796 0.95079 0.91111 0.97693 1.20529 0.96327 0.94675 0.93590 1.21532 0.98610 0.98068 0.98328 1.21463 0.94910 0.99820 1.00047 1.18989 0.93493 0.91471 0.95476 1.21589 1.31266 1.01711 1.00890 0.92079 1.25871 0.95224 0.99038 0.99564 1.70097 1.35846 1.18563 1.33072 0.85540 0.77965 0.78553 0.79882 1.18845 1.20712 1.20460 1.44470 1.07943 1.10676 1.65672 0.74169 0.87200 0.86694 0.88422 0.89015 0.88765 0.90061 0.91428 0.92615 0.89290 0.92163 0.95506 0.93969 0.93434 0.94289 0.94814 0.94042 0.92618 0.99619 0.99108 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.26 71.24 0.73 -0.56 16 2 C 0.39 8.35 7.74 137.96 1.07 9.42 16 3 N -0.57 -13.08 10.18 -175.46 -1.79 -14.87 16 4 C 0.14 3.24 6.76 41.66 0.28 3.52 16 5 C -0.10 -1.46 9.77 71.24 0.70 -0.77 16 6 C -0.21 -5.42 5.93 -19.54 -0.12 -5.54 16 7 C -0.08 -1.76 9.42 71.24 0.67 -1.09 16 8 C 0.39 11.82 7.31 134.38 0.98 12.81 16 9 N -0.59 -20.89 8.24 -343.94 -2.83 -23.72 16 10 C 0.07 2.81 5.19 86.38 0.45 3.26 16 11 C -0.05 -2.17 0.60 -52.18 -0.03 -2.20 16 12 C -0.11 -4.32 8.06 71.98 0.58 -3.74 16 13 C -0.11 -4.46 8.06 71.98 0.58 -3.88 16 14 C 0.04 2.28 4.04 29.85 0.12 2.40 16 15 C -0.52 -29.06 7.65 25.60 0.20 -28.86 16 16 H 0.06 3.36 5.68 -2.91 -0.02 3.34 16 17 C 0.00 0.01 5.46 84.65 0.46 0.47 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 19 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 N -0.66 -16.89 5.27 -183.32 -0.97 -17.85 16 24 H 0.42 10.45 6.28 -92.71 -0.58 9.87 16 25 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.09 1.12 5.92 -2.39 -0.01 1.10 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.05 1.50 7.62 -2.39 -0.02 1.48 16 33 H 0.09 1.45 5.94 -2.39 -0.01 1.44 16 34 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.03 0.95 5.58 -2.39 -0.01 0.93 16 36 H 0.04 1.59 7.45 -2.39 -0.02 1.57 16 37 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.04 1.83 6.62 -2.39 -0.02 1.81 16 41 H 0.05 2.19 7.60 -2.39 -0.02 2.17 16 42 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 43 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.79 347.27 3.81 -65.98 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.41 Total: 15.01 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 6.67 Total: -14.76 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -5.30 Total: -112.99 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.79 3.81 -65.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340943758.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.224 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds