Wall clock time and date at job start Mon Mar 30 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30838 * 125.89753 * 2 1 4 4 N 1.40088 * 108.20631 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.03667 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46973 * 265.02356 * 5 4 3 7 7 C 1.52998 * 109.47155 * 145.02793 * 5 4 3 8 8 C 1.34944 * 107.92324 * 0.26235 * 4 3 2 9 9 C 1.35313 * 107.74979 * 359.57849 * 8 4 3 10 10 C 1.50696 * 126.04620 * 180.16040 * 9 8 4 11 11 N 1.46903 * 109.47148 * 260.30736 * 10 9 8 12 12 C 1.46906 * 110.99964 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47006 * 185.35239 * 12 11 10 14 14 C 1.50699 * 115.55095 * 65.04887 * 13 12 11 15 15 H 1.08001 * 119.99758 * 265.44401 * 14 13 12 16 16 C 1.37871 * 120.00022 * 85.44576 * 14 13 12 17 17 N 1.31516 * 120.00007 * 353.59893 * 16 14 13 18 18 Si 1.86800 * 119.99940 * 173.59679 * 16 14 13 19 19 H 1.48496 * 109.46989 * 60.00036 * 18 16 14 20 20 H 1.48502 * 109.47109 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47138 * 300.00155 * 18 16 14 22 22 C 1.53000 * 117.49215 * 279.37862 * 13 12 11 23 23 C 1.52998 * 117.49542 * 210.71900 * 13 12 11 24 24 H 1.09004 * 109.46767 * 90.02539 * 1 2 3 25 25 H 1.09003 * 109.47427 * 210.02508 * 1 2 3 26 26 H 1.08996 * 109.47471 * 330.03122 * 1 2 3 27 27 H 1.08994 * 109.47670 * 25.02395 * 5 4 3 28 28 H 1.09005 * 109.47397 * 59.99879 * 6 5 4 29 29 H 1.08998 * 109.47273 * 300.00078 * 6 5 4 30 30 H 1.08999 * 109.47159 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47017 * 179.97438 * 7 5 4 32 32 H 1.09002 * 109.46815 * 299.99587 * 7 5 4 33 33 H 1.08998 * 109.47324 * 59.99779 * 7 5 4 34 34 H 1.07999 * 126.12679 * 179.73342 * 8 4 3 35 35 H 1.09007 * 109.46976 * 20.30348 * 10 9 8 36 36 H 1.09003 * 109.47361 * 140.30502 * 10 9 8 37 37 H 1.00894 * 111.00065 * 303.94915 * 11 10 9 38 38 H 1.08999 * 109.46977 * 305.35028 * 12 11 10 39 39 H 1.08999 * 109.46862 * 65.34967 * 12 11 10 40 40 H 0.96998 * 119.99815 * 179.97438 * 17 16 14 41 41 H 1.08996 * 117.50698 * 0.02562 * 22 13 12 42 42 H 1.09005 * 117.49338 * 145.02379 * 22 13 12 43 43 H 1.09003 * 117.49826 * 214.97256 * 23 13 12 44 44 H 1.09000 * 117.50429 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5009 0.0013 6 6 5.2757 1.7019 -1.4355 7 6 5.8999 0.8495 0.8286 8 6 3.6142 -0.7152 -0.0049 9 6 2.3272 -1.1330 0.0006 10 6 1.8599 -2.5657 0.0008 11 7 1.4799 -2.9570 -1.3632 12 6 1.0187 -4.3513 -1.4017 13 6 0.7597 -4.7629 -2.8524 14 6 1.9737 -4.7984 -3.7446 15 1 2.2246 -3.9395 -4.3494 16 6 2.7640 -5.9272 -3.7887 17 7 2.5337 -6.9239 -2.9622 18 14 4.1620 -6.0410 -5.0225 19 1 5.1259 -4.9374 -4.7815 20 1 4.8538 -7.3458 -4.8678 21 1 3.6171 -5.9304 -6.3995 22 6 -0.5674 -4.3348 -3.4819 23 6 -0.3350 -5.8008 -3.1075 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5133 27 1 4.5317 2.4665 0.4360 28 1 4.4849 2.1660 -2.0250 29 1 5.5339 0.7363 -1.8702 30 1 6.1542 2.3472 -1.4350 31 1 6.7788 1.4942 0.8287 32 1 5.5537 0.7063 1.8522 33 1 6.1581 -0.1161 0.3938 34 1 4.4891 -1.3484 -0.0100 35 1 2.6653 -3.2105 0.3527 36 1 0.9986 -2.6669 0.6611 37 1 0.7797 -2.3338 -1.7364 38 1 1.7826 -4.9987 -0.9712 39 1 0.0971 -4.4450 -0.8273 40 1 3.0895 -7.7183 -2.9935 41 1 -1.2559 -3.7596 -2.8628 42 1 -0.5625 -4.0793 -4.5415 43 1 -0.1774 -6.5090 -3.9209 44 1 -0.8705 -6.1907 -2.2418 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341365359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:35 Heat of formation + Delta-G solvation = 92.018401 kcal Electronic energy + Delta-G solvation = -21667.146991 eV Core-core repulsion = 18621.644712 eV Total energy + Delta-G solvation = -3045.502279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12629 -37.00355 -36.08580 -34.20959 -31.76676 -31.59392 -30.14039 -27.67963 -27.30343 -26.10037 -25.09245 -23.01032 -21.66553 -20.91938 -19.94437 -19.32683 -18.86414 -16.71706 -15.96180 -15.32111 -14.90100 -14.58527 -14.40608 -14.11857 -13.76453 -13.61208 -13.37618 -13.19032 -12.96794 -12.65107 -12.33819 -12.29950 -12.20570 -11.88193 -11.69032 -11.49598 -11.32405 -11.19636 -11.12373 -10.86309 -10.60328 -10.39444 -10.17290 -10.08713 -9.38237 -8.97643 -8.72276 -8.29709 -8.19123 -7.92048 -7.34214 -5.88640 -3.89163 2.10665 2.58070 2.99005 3.39512 3.43103 3.46986 4.33949 4.53187 4.67221 4.83092 4.90737 4.99787 5.16755 5.23556 5.27114 5.41582 5.44900 5.48238 5.55266 5.57502 5.67517 5.72511 5.75028 5.81691 5.95269 6.01385 6.15071 6.24474 6.26473 6.44704 6.50434 6.60303 6.74218 6.82259 6.93569 6.99359 7.19944 7.25386 7.55548 7.69060 7.96284 8.04387 8.11073 8.32524 8.65422 9.09390 9.73105 11.21398 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015698 B = 0.004837 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.233678 B = 5787.410375 C = 6959.726012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.078 3.922 3 N -0.306 5.306 4 N -0.372 5.372 5 C 0.159 3.841 6 C -0.166 4.166 7 C -0.165 4.165 8 C 0.072 3.928 9 C -0.219 4.219 10 C 0.137 3.863 11 N -0.664 5.664 12 C 0.107 3.893 13 C 0.054 3.946 14 C -0.466 4.466 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.279 1.279 22 C -0.216 4.216 23 C -0.159 4.159 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.329 0.671 38 H 0.075 0.925 39 H -0.007 1.007 40 H 0.257 0.743 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 14.055 8.462 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 N -0.128 5.128 4 N -0.155 5.155 5 C 0.057 3.943 6 C -0.224 4.224 7 C -0.223 4.223 8 C -0.074 4.074 9 C -0.231 4.231 10 C 0.007 3.993 11 N -0.294 5.294 12 C -0.021 4.021 13 C 0.053 3.947 14 C -0.504 4.504 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.253 4.253 23 C -0.197 4.197 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.186 0.814 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.011 0.989 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.677 15.062 8.340 17.605 hybrid contribution 0.039 -1.024 -0.318 1.073 sum 3.716 14.038 8.023 16.590 Atomic orbital electron populations 1.20153 0.87185 1.02751 1.03013 1.22171 0.96589 0.90556 0.99550 1.77189 0.86538 1.22824 1.26254 1.48571 1.04803 1.04462 1.57685 1.21154 0.82004 0.93787 0.97345 1.22252 1.01800 1.03148 0.95223 1.22196 0.97690 1.02137 1.00277 1.22194 0.99233 0.84730 1.01217 1.19948 0.91766 0.96068 1.15287 1.20094 0.98571 0.89762 0.90854 1.60303 1.46678 1.03899 1.18516 1.21543 0.95914 0.87770 0.96901 1.18816 0.87869 0.96446 0.91579 1.20262 1.07958 0.99280 1.22890 0.92447 1.24916 0.97049 0.95948 0.95517 1.70001 1.39574 1.06633 1.36290 0.86758 0.82704 0.76922 0.82125 1.20384 1.21579 1.20520 1.22983 1.03696 0.98576 1.00070 1.22514 1.04983 0.90870 1.01355 0.90436 0.90713 0.91349 0.88463 0.91670 0.91541 0.90799 0.90201 0.91595 0.91257 0.81355 0.91090 0.95930 0.85401 0.90650 0.98907 0.93365 0.92196 0.90652 0.90167 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.26 36.00 0.37 -0.53 16 2 C 0.08 1.21 7.22 -82.41 -0.59 0.61 16 3 N -0.31 -4.87 12.58 33.67 0.42 -4.45 16 4 N -0.37 -5.20 3.52 -54.87 -0.19 -5.39 16 5 C 0.16 1.61 3.93 -67.93 -0.27 1.34 16 6 C -0.17 -1.59 9.52 37.16 0.35 -1.24 16 7 C -0.16 -1.28 8.84 37.16 0.33 -0.96 16 8 C 0.07 1.06 10.50 -17.23 -0.18 0.88 16 9 C -0.22 -3.51 5.61 -105.05 -0.59 -4.10 16 10 C 0.14 2.32 5.88 -4.98 -0.03 2.29 16 11 N -0.66 -13.27 6.37 -115.05 -0.73 -14.01 16 12 C 0.11 2.41 5.51 -3.82 -0.02 2.38 16 13 C 0.05 1.32 1.55 -155.66 -0.24 1.08 16 14 C -0.47 -12.84 8.74 -34.44 -0.30 -13.14 16 15 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 16 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 17 N -0.89 -25.31 12.92 55.43 0.72 -24.60 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.22 -4.75 9.96 -26.69 -0.27 -5.02 16 23 C -0.16 -3.78 9.41 -26.69 -0.25 -4.04 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.87 7.50 -51.93 -0.39 0.48 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 7.16 -51.93 -0.37 0.19 16 34 H 0.17 2.16 7.27 -52.49 -0.38 1.77 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.36 7.60 -51.93 -0.39 -0.03 16 37 H 0.33 6.34 8.78 -39.29 -0.34 5.99 16 38 H 0.08 1.88 8.13 -51.93 -0.42 1.46 16 39 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -30.78 365.05 -8.86 -39.64 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.77 Total: 5.38 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.79 Total: -18.65 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.21 Total: -48.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.78 -8.86 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341365359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.658 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds