Wall clock time and date at job start Mon Mar 30 2020 01:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46903 * 2 1 4 4 C 1.36934 * 120.00102 * 275.64917 * 3 2 1 5 5 H 1.08004 * 119.99978 * 34.00172 * 4 3 2 6 6 C 1.38812 * 120.00469 * 213.99833 * 4 3 2 7 7 N 1.31624 * 119.99989 * 22.94877 * 6 4 3 8 8 Si 1.86797 * 120.00232 * 202.95556 * 6 4 3 9 9 H 1.48497 * 109.47406 * 59.99338 * 8 6 4 10 10 H 1.48499 * 109.47468 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46940 * 299.99557 * 8 6 4 12 12 C 1.46497 * 120.00056 * 95.66260 * 3 2 1 13 13 C 1.50708 * 109.46690 * 269.99597 * 12 3 2 14 14 C 1.38292 * 119.96948 * 270.02165 * 13 12 3 15 15 C 1.38242 * 120.11094 * 180.02562 * 14 13 12 16 16 C 1.38170 * 120.05748 * 359.67547 * 15 14 13 17 17 C 1.38713 * 119.93686 * 0.57992 * 16 15 14 18 18 O 1.35907 * 120.05164 * 179.72183 * 17 16 15 19 19 C 1.42903 * 117.00020 * 359.72194 * 18 17 16 20 20 C 1.52992 * 109.46950 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47035 * 65.00356 * 20 19 18 22 22 C 1.53000 * 109.47094 * 185.00000 * 20 19 18 23 23 C 1.38123 * 119.97335 * 89.99767 * 13 12 3 24 24 H 1.08996 * 109.47465 * 300.00049 * 1 2 3 25 25 H 1.09003 * 109.47118 * 60.00334 * 1 2 3 26 26 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47026 * 239.99392 * 2 1 3 28 28 H 1.09005 * 109.46735 * 120.00328 * 2 1 3 29 29 H 0.96995 * 120.00047 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47472 * 149.99718 * 12 3 2 31 31 H 1.09001 * 109.47270 * 29.98983 * 12 3 2 32 32 H 1.08004 * 119.94411 * 359.97438 * 14 13 12 33 33 H 1.07999 * 119.97303 * 179.97438 * 15 14 13 34 34 H 1.07993 * 120.03117 * 180.29891 * 16 15 14 35 35 H 1.09001 * 109.46709 * 60.00060 * 19 18 17 36 36 H 1.08996 * 109.46750 * 300.00521 * 19 18 17 37 37 H 1.09001 * 109.47816 * 305.00119 * 20 19 18 38 38 H 1.08996 * 109.46961 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46565 * 299.99745 * 21 20 19 40 40 H 1.08997 * 109.47099 * 59.99775 * 21 20 19 41 41 H 1.08994 * 109.47151 * 60.00360 * 22 20 19 42 42 H 1.08999 * 109.47192 * 180.02562 * 22 20 19 43 43 H 1.08997 * 109.47255 * 300.00357 * 22 20 19 44 44 H 1.07998 * 120.02973 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0657 -1.1801 5 1 1.4325 1.8887 -1.9799 6 6 3.1609 2.9870 -1.3486 7 7 4.2518 2.8993 -0.6174 8 14 2.9913 4.3516 -2.6129 9 1 1.8081 5.1867 -2.2844 10 1 4.2126 5.1962 -2.5967 11 1 2.8180 3.7570 -3.9627 12 6 2.3804 2.0301 1.2625 13 6 1.1715 2.7239 1.8355 14 6 0.9072 4.0397 1.5017 15 6 -0.2006 4.6791 2.0260 16 6 -1.0505 4.0027 2.8799 17 6 -0.7846 2.6845 3.2204 18 8 -1.6159 2.0187 4.0646 19 6 -2.7420 2.7397 4.5689 20 6 -3.5552 1.8329 5.4946 21 6 -2.7181 1.4776 6.7250 22 6 -4.8259 2.5622 5.9356 23 6 0.3281 2.0450 2.6932 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.9675 3.5434 -0.7349 30 1 3.1679 2.7619 1.0822 31 1 2.7367 1.2793 1.9678 32 1 1.5679 4.5688 0.8309 33 1 -0.4046 5.7068 1.7641 34 1 -1.9185 4.5011 3.2854 35 1 -3.3675 3.0644 3.7374 36 1 -2.3960 3.6110 5.1251 37 1 -3.8259 0.9203 4.9635 38 1 -3.2976 0.8319 7.3847 39 1 -1.8128 0.9581 6.4107 40 1 -2.4475 2.3902 7.2561 41 1 -5.4223 2.8153 5.0591 42 1 -5.4051 1.9163 6.5954 43 1 -4.5553 3.4747 6.4667 44 1 0.5349 1.0175 2.9536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342610314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:26 Heat of formation + Delta-G solvation = -24.826512 kcal Electronic energy + Delta-G solvation = -21940.620119 eV Core-core repulsion = 18857.758314 eV Total energy + Delta-G solvation = -3082.861805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07772 -39.07289 -37.37999 -36.05366 -33.85718 -32.62607 -31.15792 -30.14803 -28.06590 -27.74477 -27.07189 -25.24226 -23.34271 -22.59310 -21.84001 -20.96680 -18.96234 -18.25953 -17.28573 -16.94878 -16.83403 -16.55709 -15.73359 -15.55170 -15.23011 -15.20046 -14.83749 -14.34434 -14.13309 -14.00619 -13.67692 -13.39252 -13.29656 -13.08459 -12.97583 -12.87336 -12.64552 -12.41432 -12.36149 -12.10058 -12.05107 -11.98609 -11.84407 -11.76083 -11.55943 -11.47284 -11.41046 -10.51602 -9.61067 -9.01634 -8.61166 -7.82958 -5.40492 0.52214 0.63410 1.45220 1.48155 1.54718 2.28831 2.51093 2.92013 3.25238 3.80528 3.85831 3.88913 3.99403 4.10827 4.15154 4.30390 4.40557 4.42468 4.52181 4.55347 4.62035 4.69866 4.74170 4.80346 4.82289 4.85923 4.95949 5.00513 5.03085 5.06260 5.19909 5.21639 5.26789 5.37610 5.40879 5.44135 5.56220 5.56806 5.64675 5.74728 5.96154 6.01575 6.46442 6.59631 7.15424 7.85393 8.37512 9.13549 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.004341 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.423293 B = 6448.984408 C = 6942.268982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.051 0.949 6 C -0.030 4.030 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.277 1.277 12 C 0.174 3.826 13 C -0.044 4.044 14 C -0.158 4.158 15 C -0.084 4.084 16 C -0.219 4.219 17 C 0.122 3.878 18 O -0.327 6.327 19 C 0.056 3.944 20 C -0.093 4.093 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.158 4.158 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.253 0.747 30 H 0.081 0.919 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.596 0.812 12.966 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.310 5.310 4 C -0.391 4.391 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.557 5.557 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.203 1.203 12 C 0.048 3.952 13 C -0.047 4.047 14 C -0.178 4.178 15 C -0.102 4.102 16 C -0.238 4.238 17 C 0.077 3.923 18 O -0.242 6.242 19 C -0.019 4.019 20 C -0.112 4.112 21 C -0.203 4.203 22 C -0.198 4.198 23 C -0.177 4.177 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.409 0.658 13.012 20.179 hybrid contribution 0.331 0.870 -0.989 1.358 sum -15.077 1.528 12.024 19.345 Atomic orbital electron populations 1.22203 0.98004 1.00599 1.00638 1.20969 0.93273 0.85487 0.98943 1.43913 1.75988 1.09323 1.01790 1.19117 1.07012 1.19340 0.93676 0.93116 1.25615 0.93857 1.03017 1.00207 1.70079 1.05157 1.36495 1.43986 0.85656 0.76860 0.80183 0.79758 1.20506 1.21553 1.20277 1.19957 0.93189 0.96461 0.85611 1.20786 0.97691 0.93741 0.92474 1.20962 0.99484 0.95433 1.01882 1.21122 0.93256 1.00236 0.95578 1.21288 1.03392 0.94209 1.04919 1.18979 0.90659 0.91434 0.91258 1.86020 1.37189 1.41516 1.59434 1.23132 0.85675 0.95663 0.97394 1.21154 0.95513 0.98862 0.95671 1.21808 0.99669 1.01849 0.96983 1.21757 0.95275 1.00805 1.01960 1.20220 0.95317 1.00277 1.01932 0.93473 0.94987 0.91596 0.94583 0.93426 0.93734 0.90102 0.94630 0.88540 0.84125 0.83336 0.91618 0.91334 0.90815 0.91221 0.93763 0.92298 0.91927 0.90734 0.91718 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 10.20 71.98 0.73 -5.19 16 2 C 0.14 6.01 6.44 86.38 0.56 6.57 16 3 N -0.59 -29.95 2.44 -706.33 -1.73 -31.68 16 4 C -0.26 -14.47 9.48 84.03 0.80 -13.68 16 5 H 0.05 2.85 7.93 -2.91 -0.02 2.83 16 6 C -0.03 -1.63 4.95 84.86 0.42 -1.21 16 7 N -0.91 -52.80 11.31 21.65 0.24 -52.55 16 8 Si 0.95 44.52 29.61 68.60 2.03 46.55 16 9 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.17 8.46 5.46 85.64 0.47 8.93 16 13 C -0.04 -1.90 5.44 -19.88 -0.11 -2.01 16 14 C -0.16 -6.63 9.70 22.28 0.22 -6.41 16 15 C -0.08 -2.83 10.04 22.25 0.22 -2.61 16 16 C -0.22 -6.68 9.04 22.37 0.20 -6.48 16 17 C 0.12 4.10 6.69 22.51 0.15 4.25 16 18 O -0.33 -9.65 9.67 -92.50 -0.89 -10.54 16 19 C 0.06 1.17 4.12 71.98 0.30 1.47 16 20 C -0.09 -1.56 3.16 -10.79 -0.03 -1.60 16 21 C -0.15 -2.45 9.09 71.98 0.65 -1.79 16 22 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 23 C -0.16 -6.06 7.81 22.37 0.17 -5.89 16 24 H 0.05 1.83 6.13 -2.39 -0.01 1.82 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 28 H 0.05 1.91 7.83 -2.38 -0.02 1.90 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.08 4.46 5.26 -2.39 -0.01 4.44 16 31 H 0.04 1.65 7.80 -2.39 -0.02 1.63 16 32 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 33 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.15 3.46 6.30 -2.91 -0.02 3.44 16 35 H 0.07 1.27 7.65 -2.39 -0.02 1.25 16 36 H 0.07 1.29 7.67 -2.39 -0.02 1.27 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.92 7.82 -2.39 -0.02 0.90 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.12 4.43 8.02 -2.91 -0.02 4.41 16 Total: -1.00 -62.24 355.23 6.01 -56.23 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.94 Total: 18.61 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 5.41 Total: -26.62 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.48 Total: -84.23 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.89 Total: -10.54 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.24 6.01 -56.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342610314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.406 kcal (2) G-P(sol) polarization free energy of solvation -62.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds