Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46744 * 2 1 4 4 C 1.42902 * 113.99949 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47287 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47145 * 66.95851 * 5 4 3 7 7 C 1.46901 * 111.00324 * 157.12539 * 6 5 4 8 8 C 1.52995 * 109.47482 * 289.20690 * 7 6 5 9 9 C 1.46894 * 111.00238 * 281.08238 * 6 5 4 10 10 C 1.50698 * 109.47345 * 169.15666 * 9 6 5 11 11 C 1.38644 * 119.74956 * 270.29819 * 10 9 6 12 12 C 1.37623 * 120.24463 * 180.30561 * 11 10 9 13 13 C 1.40718 * 119.74544 * 359.41916 * 12 11 10 14 14 C 1.41393 * 120.24161 * 180.30559 * 13 12 11 15 15 H 1.08001 * 119.99758 * 332.77627 * 14 13 12 16 16 C 1.39943 * 120.00238 * 152.78586 * 14 13 12 17 17 N 1.30822 * 119.99539 * 337.49008 * 16 14 13 18 18 Si 1.86802 * 120.00321 * 157.49299 * 16 14 13 19 19 H 1.48491 * 109.47189 * 94.97767 * 18 16 14 20 20 H 1.48501 * 109.47005 * 214.98480 * 18 16 14 21 21 H 1.48497 * 109.46684 * 334.97894 * 18 16 14 22 22 C 1.40712 * 119.51085 * 0.28281 * 13 12 11 23 23 C 1.37613 * 119.74833 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.47073 * 299.99518 * 1 2 3 25 25 H 1.08998 * 109.47164 * 60.00296 * 1 2 3 26 26 H 1.09006 * 109.46471 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47073 * 240.00481 * 2 1 3 28 28 H 1.08995 * 109.47232 * 120.00238 * 2 1 3 29 29 H 1.09001 * 109.46961 * 59.99981 * 4 3 2 30 30 H 1.09003 * 109.46962 * 300.00132 * 4 3 2 31 31 H 1.09000 * 109.47252 * 306.96008 * 5 4 3 32 32 H 1.08999 * 109.47269 * 186.95564 * 5 4 3 33 33 H 1.09005 * 109.46946 * 49.20020 * 7 6 5 34 34 H 1.08998 * 109.47272 * 169.20063 * 7 6 5 35 35 H 1.09003 * 109.47296 * 65.57452 * 8 7 6 36 36 H 1.08993 * 109.47962 * 185.58002 * 8 7 6 37 37 H 1.09002 * 109.46846 * 305.57861 * 8 7 6 38 38 H 1.09004 * 109.47153 * 49.15871 * 9 6 5 39 39 H 1.08996 * 109.47306 * 289.15814 * 9 6 5 40 40 H 1.07998 * 119.87677 * 359.97438 * 11 10 9 41 41 H 1.08003 * 120.12288 * 179.70270 * 12 11 10 42 42 H 0.97003 * 119.99860 * 180.02562 * 17 16 14 43 43 H 1.08000 * 120.12785 * 180.02562 * 22 13 12 44 44 H 1.08002 * 119.88048 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 7 3.4284 3.5506 1.2751 7 6 4.2264 4.7521 1.5533 8 6 5.6605 4.3439 1.8960 9 6 1.9921 3.8583 1.2869 10 6 1.5697 4.2318 2.6844 11 6 1.1373 3.2466 3.5588 12 6 0.7432 3.5770 4.8354 13 6 0.7921 4.9191 5.2557 14 6 0.3959 5.2695 6.5670 15 1 -0.3261 4.6627 7.0932 16 6 0.9391 6.4026 7.1829 17 7 2.0877 6.8799 6.7776 18 14 0.0241 7.2335 8.5836 19 1 0.5331 6.7201 9.8807 20 1 0.2389 8.7012 8.5134 21 1 -1.4270 6.9397 8.4700 22 6 1.2386 5.9096 4.3616 23 6 1.6227 5.5570 3.0881 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8332 0.9768 -0.8908 30 1 3.8340 0.9766 0.8892 31 1 3.3216 3.4493 -0.8205 32 1 4.9045 3.0266 -0.1248 33 1 4.2324 5.3960 0.6738 34 1 3.7910 5.2907 2.3950 35 1 6.1291 3.8936 1.0209 36 1 6.2267 5.2247 2.1985 37 1 5.6475 3.6223 2.7129 38 1 1.4304 2.9834 0.9591 39 1 1.7934 4.6912 0.6125 40 1 1.1045 2.2167 3.2353 41 1 0.4022 2.8086 5.5134 42 1 2.4645 7.6651 7.2048 43 1 1.2805 6.9427 4.6739 44 1 1.9654 6.3156 2.4000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343518944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = -35.660641 kcal Electronic energy + Delta-G solvation = -21864.218381 eV Core-core repulsion = 18780.886772 eV Total energy + Delta-G solvation = -3083.331609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.66441 -37.58344 -36.37814 -33.63395 -31.83424 -30.95105 -30.01926 -29.16973 -28.18613 -25.77277 -23.29805 -22.69517 -22.61959 -21.00972 -20.29399 -19.54430 -17.20165 -16.70282 -16.20202 -15.28180 -15.19709 -14.89938 -14.64339 -14.03983 -13.65071 -13.51393 -13.38780 -13.00580 -12.63618 -12.46658 -12.26293 -11.90908 -11.80292 -11.59074 -11.49631 -11.36594 -11.26729 -11.04815 -11.00955 -10.90050 -10.63420 -10.50023 -10.36703 -10.09198 -9.52758 -9.29998 -9.25457 -9.01932 -7.80103 -7.33088 -7.18680 -6.72324 -4.24985 2.82067 3.10896 3.14035 3.16550 3.25415 3.78440 3.99031 4.36431 4.75923 5.06306 5.14417 5.28564 5.36774 5.40783 5.42496 5.48041 5.61401 5.69247 5.76279 5.79469 5.90338 5.91837 5.97327 6.08409 6.16478 6.19660 6.24212 6.44010 6.52971 6.53788 6.59509 6.75748 7.02028 7.16204 7.31504 7.33828 7.45555 7.64373 7.65173 7.73041 7.99438 8.13008 8.25357 8.39724 8.71365 8.97492 9.06815 10.24814 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.004378 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.330210 B = 6394.570286 C = 7381.693226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.071 3.929 5 C 0.052 3.948 6 N -0.527 5.527 7 C 0.043 3.957 8 C -0.143 4.143 9 C 0.112 3.888 10 C -0.200 4.200 11 C -0.066 4.066 12 C -0.228 4.228 13 C 0.116 3.884 14 C -0.472 4.472 15 H 0.076 0.924 16 C 0.082 3.918 17 N -0.791 5.791 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.167 4.167 23 C -0.096 4.096 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.020 0.980 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.015 0.985 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.279 0.721 43 H 0.105 0.895 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.065 -7.312 -11.528 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.299 6.299 4 C -0.006 4.006 5 C -0.077 4.077 6 N -0.251 5.251 7 C -0.085 4.085 8 C -0.201 4.201 9 C -0.014 4.014 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.247 4.247 13 C 0.113 3.887 14 C -0.501 4.501 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.416 5.416 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.186 4.186 23 C -0.115 4.115 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.033 0.967 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.220 -7.309 -11.116 13.687 hybrid contribution -0.144 0.822 0.081 0.838 sum 3.076 -6.487 -11.034 13.165 Atomic orbital electron populations 1.21741 0.93950 1.01861 1.03358 1.22400 0.95540 0.84475 0.99497 1.87944 1.21196 1.25536 1.95184 1.22532 0.81442 0.97091 0.99575 1.22159 0.99941 0.93593 0.91960 1.62151 1.05292 1.27727 1.29961 1.22181 0.93994 0.91604 1.00678 1.21767 0.95756 1.01350 1.01221 1.21029 0.86564 0.99365 0.94402 1.18933 1.12325 0.93390 0.95479 1.20328 0.98221 0.96378 0.93558 1.20982 1.11712 0.95688 0.96334 1.17560 0.88056 0.90462 0.92589 1.19517 1.22715 1.08569 0.99344 0.90544 1.25846 0.93640 0.96213 0.97935 1.69865 1.13606 1.19921 1.38176 0.86452 0.81388 0.78779 0.81003 1.19679 1.20111 1.18432 1.21073 1.06178 0.98963 0.92400 1.20508 1.00586 0.94421 0.95978 0.91370 0.92148 0.91537 0.94159 0.93512 0.93907 0.92513 0.94474 0.90038 0.96128 0.88913 0.93808 0.92802 0.91777 0.88858 0.96674 0.89535 0.89266 0.91029 0.87660 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.66 6.66 37.16 0.25 0.91 16 3 O -0.38 -5.41 7.59 -35.23 -0.27 -5.68 16 4 C 0.07 0.90 6.26 37.16 0.23 1.13 16 5 C 0.05 0.71 5.38 -3.83 -0.02 0.69 16 6 N -0.53 -9.00 4.36 -236.08 -1.03 -10.03 16 7 C 0.04 0.72 5.50 -3.83 -0.02 0.70 16 8 C -0.14 -2.06 9.87 37.16 0.37 -1.69 16 9 C 0.11 2.13 4.89 -4.98 -0.02 2.11 16 10 C -0.20 -4.46 4.98 -104.32 -0.52 -4.98 16 11 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 12 C -0.23 -5.77 9.80 -38.87 -0.38 -6.15 16 13 C 0.12 3.15 5.52 -106.83 -0.59 2.56 16 14 C -0.47 -12.82 9.01 -37.74 -0.34 -13.16 16 15 H 0.08 2.01 7.94 -52.49 -0.42 1.59 16 16 C 0.08 2.10 5.00 -17.34 -0.09 2.01 16 17 N -0.79 -20.88 11.45 55.55 0.64 -20.24 16 18 Si 0.90 18.97 29.61 -169.99 -5.03 13.94 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 22 C -0.17 -4.39 8.70 -38.88 -0.34 -4.73 16 23 C -0.10 -2.27 7.84 -39.66 -0.31 -2.58 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.52 7.95 -51.93 -0.41 0.10 16 32 H 0.08 0.97 6.22 -51.93 -0.32 0.65 16 33 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.09 1.83 5.20 -51.93 -0.27 1.56 16 35 H 0.04 0.53 6.65 -51.93 -0.35 0.19 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.77 5.20 -51.93 -0.27 1.50 16 39 H 0.02 0.29 8.05 -51.93 -0.42 -0.13 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 43 H 0.11 2.86 6.55 -52.49 -0.34 2.52 16 44 H 0.08 1.77 7.73 -52.49 -0.41 1.36 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -28.25 350.95 -9.60 -37.85 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.41 Total: 5.22 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -1.79 Total: -26.34 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: -0.39 Total: -30.27 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.27 Total: -5.68 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.25 -9.60 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.189 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds