Wall clock time and date at job start Mon Mar 30 2020 01:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46608 * 2 1 4 4 C 1.46897 * 110.99651 * 163.57583 * 3 2 1 5 5 C 1.50706 * 109.47374 * 287.50089 * 4 3 2 6 6 C 1.38634 * 119.75065 * 270.30094 * 5 4 3 7 7 C 1.37612 * 120.24946 * 180.30194 * 6 5 4 8 8 C 1.40718 * 119.74496 * 359.41824 * 7 6 5 9 9 C 1.41398 * 120.24541 * 180.29840 * 8 7 6 10 10 H 1.07995 * 119.99868 * 28.13104 * 9 8 7 11 11 C 1.39946 * 119.99770 * 208.13639 * 9 8 7 12 12 N 1.30828 * 120.00325 * 15.26509 * 11 9 8 13 13 Si 1.86799 * 119.99811 * 195.26962 * 11 9 8 14 14 H 1.48498 * 109.47110 * 59.99693 * 13 11 9 15 15 H 1.48498 * 109.47271 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47093 * 299.99969 * 13 11 9 17 17 C 1.40715 * 119.51035 * 0.28201 * 8 7 6 18 18 C 1.37620 * 119.74506 * 359.97438 * 17 8 7 19 19 C 1.46899 * 111.00288 * 287.52811 * 3 2 1 20 20 C 1.53002 * 109.46925 * 147.95949 * 19 3 2 21 21 C 1.53003 * 109.47362 * 57.62568 * 20 19 3 22 22 C 1.53004 * 109.46867 * 177.62679 * 20 19 3 23 23 O 1.42900 * 109.46898 * 297.62589 * 20 19 3 24 24 H 1.08998 * 109.47123 * 185.69483 * 1 2 3 25 25 H 1.09001 * 109.47751 * 305.69296 * 1 2 3 26 26 H 1.08998 * 109.47171 * 65.69849 * 1 2 3 27 27 H 1.08996 * 109.47276 * 240.00660 * 2 1 3 28 28 H 1.08993 * 109.46985 * 120.00021 * 2 1 3 29 29 H 1.08997 * 109.47313 * 167.50405 * 4 3 2 30 30 H 1.09001 * 109.47475 * 47.50287 * 4 3 2 31 31 H 1.08009 * 119.87650 * 0.02562 * 6 5 4 32 32 H 1.08007 * 120.13080 * 179.69698 * 7 6 5 33 33 H 0.96996 * 119.99793 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.12942 * 180.02562 * 17 8 7 35 35 H 1.07998 * 119.87736 * 180.02562 * 18 17 8 36 36 H 1.08989 * 109.47459 * 267.96127 * 19 3 2 37 37 H 1.09007 * 109.46799 * 27.96306 * 19 3 2 38 38 H 1.08995 * 109.46548 * 49.62692 * 21 20 19 39 39 H 1.08993 * 109.46992 * 169.63082 * 21 20 19 40 40 H 1.09003 * 109.46794 * 289.63154 * 21 20 19 41 41 H 1.09002 * 109.47072 * 59.99999 * 22 20 19 42 42 H 1.09006 * 109.46718 * 179.97438 * 22 20 19 43 43 H 1.08996 * 109.46783 * 299.99609 * 22 20 19 44 44 H 0.96699 * 114.00588 * 304.61549 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4353 1.4430 0.3878 5 6 3.5637 1.1654 1.8635 6 6 3.5048 2.2140 2.7684 7 6 3.6271 1.9730 4.1177 8 6 3.8004 0.6547 4.5785 9 6 3.9209 0.3943 5.9631 10 1 3.4529 1.0534 6.6792 11 6 4.6467 -0.7175 6.4054 12 7 5.4536 -1.3404 5.5853 13 14 4.4634 -1.3122 8.1666 14 1 3.0480 -1.6843 8.4186 15 1 5.3321 -2.4971 8.3820 16 1 4.8637 -0.2281 9.0993 17 6 3.8525 -0.4025 3.6513 18 6 3.7332 -0.1374 2.3062 19 6 1.8056 2.0191 -1.3077 20 6 1.5482 3.5148 -1.1133 21 6 2.7310 4.1441 -0.3746 22 6 1.3840 4.1857 -2.4786 23 8 0.3562 3.6971 -0.3465 24 1 -0.3633 -1.0226 0.1020 25 1 -0.3635 0.5996 0.8346 26 1 -0.3633 0.4229 -0.9366 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8317 2.4344 0.1688 30 1 3.9964 0.6953 -0.1728 31 1 3.3668 3.2245 2.4127 32 1 3.5858 2.7919 4.8207 33 1 5.9564 -2.1112 5.8918 34 1 3.9847 -1.4181 3.9940 35 1 3.7724 -0.9472 1.5927 36 1 2.6910 1.8805 -1.9280 37 1 0.9446 1.5627 -1.7962 38 1 3.6611 3.8492 -0.8604 39 1 2.6375 5.2298 -0.3974 40 1 2.7370 3.8015 0.6602 41 1 0.5413 3.7373 -3.0048 42 1 1.2002 5.2511 -2.3400 43 1 2.2933 4.0465 -3.0633 44 1 -0.4223 3.2618 -0.7200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343552233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:27 Heat of formation + Delta-G solvation = -34.884421 kcal Electronic energy + Delta-G solvation = -22176.414391 eV Core-core repulsion = 19093.116442 eV Total energy + Delta-G solvation = -3083.297949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.15159 -37.50794 -35.97626 -33.61749 -32.39912 -31.03369 -29.59813 -29.14718 -27.46898 -26.85811 -24.91163 -23.23705 -21.39364 -20.54374 -20.11580 -19.66003 -17.23389 -16.61205 -15.69217 -15.28614 -15.19763 -14.66425 -14.34009 -13.96911 -13.71026 -13.54282 -13.38155 -12.75315 -12.43746 -12.37436 -12.25939 -12.05500 -11.95008 -11.75209 -11.60357 -11.45380 -11.35563 -11.10034 -10.93210 -10.63476 -10.58856 -10.49466 -10.46804 -10.27720 -9.80276 -9.35890 -9.28726 -9.08678 -7.82743 -7.36572 -7.18750 -6.68390 -4.29275 2.80486 3.09606 3.12659 3.14260 3.22761 3.98479 4.15888 4.49840 4.72138 4.87479 5.01945 5.14140 5.31621 5.38512 5.54355 5.57730 5.59028 5.71967 5.79961 5.81781 5.84249 5.92365 6.03461 6.06388 6.10677 6.15310 6.29755 6.36068 6.42827 6.44243 6.51733 6.64484 7.00073 7.15092 7.31729 7.43299 7.51829 7.52972 7.68960 7.90581 7.95222 8.11970 8.19446 8.37691 8.70327 8.96563 9.04256 10.27456 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.004035 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.287635 B = 6937.779539 C = 7239.259573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.517 5.517 4 C 0.103 3.897 5 C -0.196 4.196 6 C -0.071 4.071 7 C -0.224 4.224 8 C 0.113 3.887 9 C -0.468 4.468 10 H 0.076 0.924 11 C 0.077 3.923 12 N -0.801 5.801 13 Si 0.907 3.093 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.160 4.160 18 C -0.098 4.098 19 C 0.024 3.976 20 C 0.137 3.863 21 C -0.145 4.145 22 C -0.177 4.177 23 O -0.543 6.543 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.020 0.980 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.279 0.721 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 3.888 -13.056 14.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.241 5.241 4 C -0.023 4.023 5 C -0.198 4.198 6 C -0.089 4.089 7 C -0.243 4.243 8 C 0.111 3.889 9 C -0.498 4.498 10 H 0.094 0.906 11 C -0.140 4.140 12 N -0.427 5.427 13 Si 0.731 3.269 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.191 1.191 17 C -0.179 4.179 18 C -0.117 4.117 19 C -0.104 4.104 20 C 0.096 3.904 21 C -0.202 4.202 22 C -0.235 4.235 23 O -0.347 6.347 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.038 0.962 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.726 4.291 -12.341 14.266 hybrid contribution 0.156 -1.207 -0.272 1.247 sum -5.570 3.084 -12.613 14.129 Atomic orbital electron populations 1.21758 0.95605 1.01022 1.01584 1.22157 0.95535 0.89477 1.00975 1.62040 1.19460 1.16676 1.25875 1.21171 0.86474 1.00357 0.94332 1.18838 1.14924 0.93646 0.92401 1.20325 0.99149 0.96255 0.93201 1.21015 1.13117 0.96076 0.94134 1.17593 0.87489 0.90475 0.93335 1.19536 1.29242 1.08481 0.92514 0.90636 1.25859 0.93133 0.95421 0.99606 1.69810 1.18580 1.17249 1.37031 0.86399 0.79283 0.78665 0.82511 1.18919 1.20453 1.19088 1.21211 1.05812 0.99285 0.91618 1.20507 1.01342 0.94380 0.95455 1.22879 1.00535 0.95559 0.91463 1.21114 0.86677 0.92894 0.89764 1.21999 0.95161 0.99992 1.03031 1.22497 1.01903 1.01602 0.97524 1.86620 1.18155 1.76955 1.53013 0.92973 0.91430 0.93904 0.96190 0.89365 0.90332 0.96167 0.89455 0.89161 0.91026 0.86945 0.90029 0.94201 0.91447 0.91838 0.92907 0.89442 0.92752 0.91820 0.91970 0.78810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.91 37.16 0.37 -1.48 16 2 C 0.05 0.70 5.45 -3.82 -0.02 0.68 16 3 N -0.52 -8.11 3.99 -236.07 -0.94 -9.05 16 4 C 0.10 1.80 4.15 -4.97 -0.02 1.77 16 5 C -0.20 -4.23 5.12 -104.33 -0.53 -4.77 16 6 C -0.07 -1.60 9.61 -39.66 -0.38 -1.98 16 7 C -0.22 -5.62 9.80 -38.87 -0.38 -6.00 16 8 C 0.11 3.07 5.54 -106.82 -0.59 2.48 16 9 C -0.47 -12.66 9.05 -37.74 -0.34 -13.00 16 10 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 11 C 0.08 1.96 5.17 -17.34 -0.09 1.87 16 12 N -0.80 -21.06 11.06 55.55 0.61 -20.44 16 13 Si 0.91 19.05 29.59 -169.99 -5.03 14.02 16 14 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 C -0.16 -4.17 8.67 -38.87 -0.34 -4.51 16 18 C -0.10 -2.26 8.08 -39.66 -0.32 -2.58 16 19 C 0.02 0.31 4.19 -3.82 -0.02 0.29 16 20 C 0.14 1.67 1.18 -90.62 -0.11 1.57 16 21 C -0.15 -1.94 7.18 37.16 0.27 -1.67 16 22 C -0.18 -1.68 8.82 37.16 0.33 -1.35 16 23 O -0.54 -7.40 12.89 -35.23 -0.45 -7.86 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.47 6.79 -51.93 -0.35 0.12 16 27 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 28 H 0.09 1.57 5.35 -51.93 -0.28 1.29 16 29 H 0.08 1.29 4.19 -51.93 -0.22 1.07 16 30 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 31 H 0.09 1.80 6.40 -52.48 -0.34 1.47 16 32 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 34 H 0.11 3.04 6.35 -52.49 -0.33 2.71 16 35 H 0.08 1.72 7.52 -52.49 -0.39 1.33 16 36 H 0.04 0.49 7.81 -51.94 -0.41 0.08 16 37 H 0.07 0.76 6.31 -51.92 -0.33 0.43 16 38 H 0.06 0.77 7.04 -51.93 -0.37 0.40 16 39 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.09 1.42 5.00 -51.93 -0.26 1.16 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.37 3.73 9.03 45.56 0.41 4.14 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -28.39 341.63 -9.04 -37.43 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.20 Total: 9.44 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: -2.18 Total: -28.69 kcal Atomic # 7 Polarization: -29.16 SS G_CDS: -0.33 Total: -29.49 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.45 Total: -7.86 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.39 -9.04 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.542 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds