Wall clock time and date at job start Mon Mar 30 2020 01:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46608 * 2 1 4 4 C 1.46897 * 110.99651 * 163.57583 * 3 2 1 5 5 C 1.50706 * 109.47374 * 287.50089 * 4 3 2 6 6 C 1.38634 * 119.75065 * 270.30094 * 5 4 3 7 7 C 1.37612 * 120.24946 * 180.30194 * 6 5 4 8 8 C 1.40718 * 119.74496 * 359.41824 * 7 6 5 9 9 C 1.41398 * 120.24541 * 180.29840 * 8 7 6 10 10 H 1.07995 * 119.99868 * 28.13104 * 9 8 7 11 11 C 1.39946 * 119.99770 * 208.13639 * 9 8 7 12 12 N 1.30828 * 120.00325 * 15.26509 * 11 9 8 13 13 Si 1.86799 * 119.99811 * 195.26962 * 11 9 8 14 14 H 1.48498 * 109.47110 * 59.99693 * 13 11 9 15 15 H 1.48498 * 109.47271 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47093 * 299.99969 * 13 11 9 17 17 C 1.40715 * 119.51035 * 0.28201 * 8 7 6 18 18 C 1.37620 * 119.74506 * 359.97438 * 17 8 7 19 19 C 1.46899 * 111.00288 * 287.52811 * 3 2 1 20 20 C 1.53002 * 109.46925 * 147.95949 * 19 3 2 21 21 C 1.53003 * 109.47362 * 57.62568 * 20 19 3 22 22 C 1.53004 * 109.46867 * 177.62679 * 20 19 3 23 23 O 1.42900 * 109.46898 * 297.62589 * 20 19 3 24 24 H 1.08998 * 109.47123 * 185.69483 * 1 2 3 25 25 H 1.09001 * 109.47751 * 305.69296 * 1 2 3 26 26 H 1.08998 * 109.47171 * 65.69849 * 1 2 3 27 27 H 1.08996 * 109.47276 * 240.00660 * 2 1 3 28 28 H 1.08993 * 109.46985 * 120.00021 * 2 1 3 29 29 H 1.08997 * 109.47313 * 167.50405 * 4 3 2 30 30 H 1.09001 * 109.47475 * 47.50287 * 4 3 2 31 31 H 1.08009 * 119.87650 * 0.02562 * 6 5 4 32 32 H 1.08007 * 120.13080 * 179.69698 * 7 6 5 33 33 H 0.96996 * 119.99793 * 180.02562 * 12 11 9 34 34 H 1.08000 * 120.12942 * 180.02562 * 17 8 7 35 35 H 1.07998 * 119.87736 * 180.02562 * 18 17 8 36 36 H 1.08989 * 109.47459 * 267.96127 * 19 3 2 37 37 H 1.09007 * 109.46799 * 27.96306 * 19 3 2 38 38 H 1.08995 * 109.46548 * 49.62692 * 21 20 19 39 39 H 1.08993 * 109.46992 * 169.63082 * 21 20 19 40 40 H 1.09003 * 109.46794 * 289.63154 * 21 20 19 41 41 H 1.09002 * 109.47072 * 59.99999 * 22 20 19 42 42 H 1.09006 * 109.46718 * 179.97438 * 22 20 19 43 43 H 1.08996 * 109.46783 * 299.99609 * 22 20 19 44 44 H 0.96699 * 114.00588 * 304.61549 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4353 1.4430 0.3878 5 6 3.5637 1.1654 1.8635 6 6 3.5048 2.2140 2.7684 7 6 3.6271 1.9730 4.1177 8 6 3.8004 0.6547 4.5785 9 6 3.9209 0.3943 5.9631 10 1 3.4529 1.0534 6.6792 11 6 4.6467 -0.7175 6.4054 12 7 5.4536 -1.3404 5.5853 13 14 4.4634 -1.3122 8.1666 14 1 3.0480 -1.6843 8.4186 15 1 5.3321 -2.4971 8.3820 16 1 4.8637 -0.2281 9.0993 17 6 3.8525 -0.4025 3.6513 18 6 3.7332 -0.1374 2.3062 19 6 1.8056 2.0191 -1.3077 20 6 1.5482 3.5148 -1.1133 21 6 2.7310 4.1441 -0.3746 22 6 1.3840 4.1857 -2.4786 23 8 0.3562 3.6971 -0.3465 24 1 -0.3633 -1.0226 0.1020 25 1 -0.3635 0.5996 0.8346 26 1 -0.3633 0.4229 -0.9366 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8317 2.4344 0.1688 30 1 3.9964 0.6953 -0.1728 31 1 3.3668 3.2245 2.4127 32 1 3.5858 2.7919 4.8207 33 1 5.9564 -2.1112 5.8918 34 1 3.9847 -1.4181 3.9940 35 1 3.7724 -0.9472 1.5927 36 1 2.6910 1.8805 -1.9280 37 1 0.9446 1.5627 -1.7962 38 1 3.6611 3.8492 -0.8604 39 1 2.6375 5.2298 -0.3974 40 1 2.7370 3.8015 0.6602 41 1 0.5413 3.7373 -3.0048 42 1 1.2002 5.2511 -2.3400 43 1 2.2933 4.0465 -3.0633 44 1 -0.4223 3.2618 -0.7200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343552233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:26 Heat of formation + Delta-G solvation = -52.483655 kcal Electronic energy + Delta-G solvation = -22177.177551 eV Core-core repulsion = 19093.116442 eV Total energy + Delta-G solvation = -3084.061109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37977 -39.12722 -37.24251 -35.46984 -33.39910 -32.60925 -31.25207 -30.76237 -28.73211 -28.03625 -26.31558 -24.73000 -23.05987 -22.13808 -21.31050 -21.10187 -19.18902 -17.63832 -17.21023 -16.78234 -16.42764 -15.96547 -15.59819 -15.51541 -15.26987 -15.07226 -14.46192 -14.26580 -13.88650 -13.73688 -13.51984 -13.36964 -13.25321 -13.00839 -12.87379 -12.74692 -12.61227 -12.55005 -12.47945 -12.26800 -12.05694 -11.83097 -11.73865 -11.50590 -11.29116 -11.14834 -10.99168 -10.60671 -9.31717 -9.15209 -8.96493 -8.59467 -6.31356 0.98515 1.18520 1.37456 1.48679 1.52937 2.22329 2.70863 3.12626 3.58159 3.79357 3.93964 4.04738 4.20411 4.24055 4.29313 4.33052 4.50628 4.56509 4.58216 4.67407 4.69933 4.77094 4.78835 4.84686 4.98112 5.03136 5.05508 5.09702 5.17681 5.19210 5.22506 5.32620 5.35029 5.42248 5.50807 5.54295 5.74961 5.99756 6.13185 6.20679 6.32469 6.42928 6.44535 6.73608 6.98056 7.07402 7.09907 8.38538 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.004035 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.287635 B = 6937.779539 C = 7239.259573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.108 3.892 5 C -0.181 4.181 6 C -0.074 4.074 7 C -0.242 4.242 8 C 0.081 3.919 9 C -0.509 4.509 10 H 0.071 0.929 11 C 0.036 3.964 12 N -0.833 5.833 13 Si 0.981 3.019 14 H -0.262 1.262 15 H -0.267 1.267 16 H -0.260 1.260 17 C -0.183 4.183 18 C -0.098 4.098 19 C 0.026 3.974 20 C 0.135 3.865 21 C -0.148 4.148 22 C -0.169 4.169 23 O -0.567 6.567 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.026 0.974 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.286 0.714 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 4.146 -15.168 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 N -0.253 5.253 4 C -0.018 4.018 5 C -0.182 4.182 6 C -0.092 4.092 7 C -0.262 4.262 8 C 0.079 3.921 9 C -0.539 4.539 10 H 0.089 0.911 11 C -0.178 4.178 12 N -0.460 5.460 13 Si 0.801 3.199 14 H -0.186 1.186 15 H -0.191 1.191 16 H -0.185 1.185 17 C -0.202 4.202 18 C -0.116 4.116 19 C -0.102 4.102 20 C 0.094 3.906 21 C -0.205 4.205 22 C -0.227 4.227 23 O -0.373 6.373 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.480 4.556 -14.479 16.505 hybrid contribution 0.347 -1.214 0.211 1.280 sum -6.133 3.342 -14.268 15.886 Atomic orbital electron populations 1.21685 0.93932 1.01535 1.02038 1.22163 0.96928 0.89153 1.00142 1.61914 1.17769 1.17169 1.28406 1.21095 0.88218 1.01302 0.91218 1.19299 1.11509 0.92509 0.94927 1.20604 0.98385 0.97790 0.92438 1.21206 1.13869 0.95593 0.95497 1.17913 0.88783 0.91487 0.93966 1.19772 1.31093 1.10225 0.92814 0.91118 1.26691 0.92096 0.94892 1.04108 1.69869 1.19183 1.17781 1.39139 0.85285 0.79359 0.78414 0.76807 1.18628 1.19103 1.18473 1.21167 1.07737 0.98329 0.92973 1.20729 1.00432 0.95853 0.94630 1.22963 1.01842 0.95557 0.89816 1.21184 0.85798 0.92754 0.90827 1.22006 0.96585 1.00479 1.01404 1.22399 1.03196 1.01254 0.95866 1.86587 1.19179 1.77441 1.54137 0.91984 0.93485 0.91366 0.94620 0.92547 0.88929 0.95586 0.87270 0.89077 0.90364 0.88802 0.88189 0.93091 0.89468 0.90630 0.92421 0.92558 0.91095 0.92010 0.90867 0.77228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.91 71.98 0.71 -2.48 16 2 C 0.04 1.25 5.45 86.30 0.47 1.72 16 3 N -0.53 -15.39 3.99 -900.80 -3.59 -18.98 16 4 C 0.11 3.58 4.15 85.56 0.35 3.94 16 5 C -0.18 -7.74 5.12 -19.67 -0.10 -7.84 16 6 C -0.07 -3.36 9.61 22.22 0.21 -3.15 16 7 C -0.24 -12.58 9.80 22.73 0.22 -12.35 16 8 C 0.08 4.56 5.54 -21.29 -0.12 4.45 16 9 C -0.51 -28.85 9.05 23.46 0.21 -28.64 16 10 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 11 C 0.04 1.88 5.17 85.26 0.44 2.32 16 12 N -0.83 -45.26 11.06 21.83 0.24 -45.02 16 13 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 15 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 C -0.18 -9.93 8.67 22.73 0.20 -9.73 16 18 C -0.10 -4.58 8.08 22.22 0.18 -4.40 16 19 C 0.03 0.57 4.19 86.30 0.36 0.93 16 20 C 0.14 2.90 1.18 -10.79 -0.01 2.89 16 21 C -0.15 -3.63 7.18 71.98 0.52 -3.11 16 22 C -0.17 -2.58 8.82 71.98 0.63 -1.94 16 23 O -0.57 -14.15 12.89 -148.98 -1.92 -16.07 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.26 6.79 -2.39 -0.02 1.25 16 27 H 0.04 0.90 8.05 -2.39 -0.02 0.88 16 28 H 0.06 1.96 5.35 -2.39 -0.01 1.95 16 29 H 0.09 2.82 4.19 -2.39 -0.01 2.81 16 30 H 0.03 0.84 7.99 -2.39 -0.02 0.82 16 31 H 0.11 4.46 6.40 -2.91 -0.02 4.44 16 32 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 33 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 34 H 0.09 5.36 6.35 -2.91 -0.02 5.34 16 35 H 0.10 4.23 7.52 -2.91 -0.02 4.21 16 36 H 0.05 1.02 7.81 -2.39 -0.02 1.00 16 37 H 0.09 1.56 6.31 -2.38 -0.02 1.54 16 38 H 0.07 1.62 7.04 -2.39 -0.02 1.61 16 39 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 40 H 0.06 1.74 5.00 -2.39 -0.01 1.73 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.38 6.71 9.03 -74.06 -0.67 6.04 16 Total: -1.00 -63.70 341.63 1.36 -62.34 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.32 Total: 33.27 kcal Atomic # 6 Polarization: -61.70 SS G_CDS: 4.29 Total: -57.41 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -3.35 Total: -64.00 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.92 Total: -16.07 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -63.70 1.36 -62.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.854 kcal (2) G-P(sol) polarization free energy of solvation -63.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds