Wall clock time and date at job start Mon Mar 30 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46482 * 2 1 4 4 C 1.46908 * 110.99525 * 199.69405 * 3 2 1 5 5 C 1.50696 * 109.46687 * 72.39404 * 4 3 2 6 6 H 1.08001 * 120.00658 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99622 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00185 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99905 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47078 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47385 * 120.00010 * 9 7 5 12 12 H 1.48499 * 109.46843 * 240.00119 * 9 7 5 13 13 C 1.46902 * 111.00247 * 75.74578 * 3 2 1 14 14 H 1.08999 * 109.46675 * 312.09025 * 13 3 2 15 15 C 1.53001 * 109.47145 * 72.08345 * 13 3 2 16 16 O 1.42901 * 109.46822 * 66.75879 * 15 13 3 17 17 C 1.42902 * 113.99930 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47337 * 192.08875 * 13 3 2 19 19 C 1.50698 * 109.47118 * 65.07694 * 18 13 3 20 20 C 1.38240 * 120.00241 * 273.39343 * 19 18 13 21 21 C 1.38232 * 119.99677 * 179.76703 * 20 19 18 22 22 C 1.38233 * 120.00446 * 0.50829 * 21 20 19 23 23 C 1.38232 * 119.99974 * 359.74057 * 22 21 20 24 24 C 1.38235 * 119.99960 * 0.02562 * 23 22 21 25 25 H 1.08992 * 109.47372 * 304.56657 * 1 2 3 26 26 H 1.08999 * 109.47067 * 64.57150 * 1 2 3 27 27 H 1.09002 * 109.46455 * 184.56387 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00000 * 2 1 3 29 29 H 1.09000 * 109.47167 * 119.99413 * 2 1 3 30 30 H 1.08999 * 109.46727 * 192.38829 * 4 3 2 31 31 H 1.08992 * 109.47309 * 312.39060 * 4 3 2 32 32 H 0.96997 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47219 * 186.75067 * 15 13 3 34 34 H 1.08996 * 109.47462 * 306.75697 * 15 13 3 35 35 H 1.09003 * 109.47049 * 179.97438 * 17 16 15 36 36 H 1.08999 * 109.47235 * 299.99757 * 17 16 15 37 37 H 1.08999 * 109.47127 * 60.00231 * 17 16 15 38 38 H 1.08990 * 109.47120 * 185.08321 * 18 13 3 39 39 H 1.09001 * 109.46878 * 305.08478 * 18 13 3 40 40 H 1.07998 * 119.99531 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.99684 * 180.22790 * 21 20 19 42 42 H 1.07999 * 120.00054 * 179.73016 * 22 21 20 43 43 H 1.07994 * 120.00624 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.00298 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4125 1.4510 -0.4622 5 6 3.4613 1.1991 -1.9472 6 1 2.5490 1.0094 -2.4931 7 6 4.6708 1.2118 -2.6091 8 7 5.7817 1.4443 -1.9446 9 14 4.7314 0.9002 -4.4499 10 1 3.3556 0.6672 -4.9581 11 1 5.3185 2.0808 -5.1328 12 1 5.5682 -0.2960 -4.7221 13 6 1.8766 1.9940 1.3292 14 1 0.8728 1.8048 1.7094 15 6 2.9063 1.3846 2.2828 16 8 4.2207 1.7654 1.8711 17 6 5.2626 1.2463 2.6999 18 6 2.1071 3.5030 1.2264 19 6 1.0187 4.1214 0.3873 20 6 1.1512 4.1733 -0.9878 21 6 0.1506 4.7362 -1.7577 22 6 -0.9777 5.2566 -1.1520 23 6 -1.1079 5.2093 0.2234 24 6 -0.1095 4.6421 0.9931 25 1 -0.3634 0.5830 0.8462 26 1 -0.3633 0.4413 -0.9281 27 1 -0.3632 -1.0245 0.0818 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.8200 2.4390 -0.2477 31 1 4.0029 0.6944 0.0544 32 1 6.6325 1.4536 -2.4103 33 1 2.7234 1.7465 3.2945 34 1 2.8203 0.2982 2.2643 35 1 6.2286 1.5800 2.3210 36 1 5.1284 1.6056 3.7202 37 1 5.2257 0.1570 2.6905 38 1 2.0905 3.9419 2.2239 39 1 3.0751 3.6919 0.7623 40 1 2.0350 3.7711 -1.4606 41 1 0.2525 4.7734 -2.8323 42 1 -1.7574 5.7002 -1.7533 43 1 -1.9892 5.6162 0.6967 44 1 -0.2110 4.6055 2.0677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347356469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:05 Heat of formation + Delta-G solvation = -33.469039 kcal Electronic energy + Delta-G solvation = -22954.524423 eV Core-core repulsion = 19871.287850 eV Total energy + Delta-G solvation = -3083.236574 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60031 -39.37892 -37.47641 -34.81825 -34.01862 -31.61725 -31.43066 -30.68334 -27.92158 -27.54311 -26.38387 -24.05959 -23.61327 -23.15651 -21.95469 -20.17631 -18.66294 -17.64496 -17.20950 -16.81607 -16.65527 -16.17034 -16.01344 -15.63007 -15.46443 -15.41898 -14.62715 -14.05910 -14.02689 -14.01115 -13.82539 -13.53932 -13.21586 -12.94183 -12.89056 -12.70548 -12.56051 -12.52222 -12.27599 -12.09906 -11.99732 -11.76753 -11.64967 -11.54717 -11.21132 -11.08250 -10.44393 -10.37460 -9.58629 -9.32537 -8.69294 -8.05538 -6.13537 0.68524 0.76228 1.37957 1.39623 1.51586 2.44515 3.01647 3.11118 3.24081 3.46142 3.97010 4.15267 4.18954 4.25801 4.32359 4.37558 4.43324 4.48571 4.51010 4.55601 4.59875 4.63238 4.73435 4.79460 4.85721 4.87749 4.95078 5.01687 5.09096 5.23631 5.29015 5.40244 5.44058 5.47188 5.64145 5.64773 5.76685 5.83929 5.87603 6.08005 6.28095 6.37959 6.39924 6.63179 6.89415 7.07885 7.53739 9.02280 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.007684 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.509915 B = 3643.066458 C = 4764.357763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.052 3.948 3 N -0.526 5.526 4 C 0.234 3.766 5 C -0.513 4.513 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.926 5.926 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.091 3.909 14 H 0.104 0.896 15 C 0.029 3.971 16 O -0.392 6.392 17 C 0.033 3.967 18 C -0.062 4.062 19 C -0.071 4.071 20 C -0.104 4.104 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.127 4.127 24 C -0.125 4.125 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.024 0.976 30 H 0.014 0.986 31 H -0.029 1.029 32 H 0.257 0.743 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.032 0.968 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 3.466 9.811 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 N -0.250 5.250 4 C 0.108 3.892 5 C -0.552 4.552 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.018 4.018 14 H 0.122 0.878 15 C -0.049 4.049 16 O -0.311 6.311 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.071 4.071 20 C -0.122 4.122 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.032 0.968 31 H -0.011 1.011 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.947 3.859 9.284 15.615 hybrid contribution 1.466 -1.079 -0.550 1.901 sum -10.481 2.780 8.735 13.924 Atomic orbital electron populations 1.21643 0.93806 1.01401 1.01622 1.21998 0.96407 0.89887 0.99284 1.62218 1.23142 1.16988 1.22672 1.19211 0.82850 0.95026 0.92123 1.21638 0.92144 1.46292 0.95117 0.93240 1.25706 0.95532 0.95942 1.02096 1.70127 0.98179 1.51515 1.36943 0.85629 0.78045 0.77551 0.81155 1.19252 1.20840 1.20768 1.21913 0.97209 0.94140 0.88496 0.87838 1.23326 0.84068 0.98494 0.98989 1.88283 1.14968 1.74328 1.53539 1.22701 0.91293 0.97663 0.94721 1.20497 0.96548 0.93833 0.99100 1.19802 0.96155 0.97561 0.93600 1.21097 0.99000 0.97535 0.94552 1.21269 0.94921 0.99666 0.99861 1.21315 0.97570 1.00418 0.95655 1.21354 0.99421 0.99921 0.93728 1.21244 0.93296 0.99117 1.00629 0.92180 0.93752 0.91351 0.93275 0.95815 0.96771 1.01098 0.93373 0.91055 0.94324 0.90876 0.92118 0.94983 0.89437 0.93224 0.88949 0.86639 0.84353 0.83573 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 10.08 71.98 0.73 -3.13 16 2 C 0.05 2.02 5.43 86.30 0.47 2.49 16 3 N -0.53 -22.14 3.55 -875.50 -3.11 -25.24 16 4 C 0.23 12.30 2.87 85.55 0.25 12.54 16 5 C -0.51 -29.60 8.36 25.60 0.21 -29.38 16 6 H 0.05 2.88 7.72 -2.91 -0.02 2.86 16 7 C 0.00 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 9 Si 0.95 46.01 29.54 68.60 2.03 48.03 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.09 3.13 2.17 44.91 0.10 3.23 16 14 H 0.10 3.04 6.54 -2.39 -0.02 3.02 16 15 C 0.03 0.96 5.20 71.98 0.37 1.34 16 16 O -0.39 -15.76 6.29 -148.98 -0.94 -16.69 16 17 C 0.03 1.06 11.01 113.37 1.25 2.31 16 18 C -0.06 -2.14 4.50 29.85 0.13 -2.00 16 19 C -0.07 -2.39 5.00 -19.86 -0.10 -2.48 16 20 C -0.10 -3.99 9.15 22.27 0.20 -3.78 16 21 C -0.14 -4.57 10.05 22.27 0.22 -4.34 16 22 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 23 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 24 C -0.13 -3.29 9.69 22.27 0.22 -3.08 16 25 H 0.06 1.63 6.66 -2.39 -0.02 1.61 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 2.18 7.08 -2.39 -0.02 2.16 16 29 H 0.02 0.87 6.23 -2.39 -0.01 0.85 16 30 H 0.01 0.83 5.28 -2.39 -0.01 0.82 16 31 H -0.03 -1.67 6.58 -2.39 -0.02 -1.69 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.30 6.38 -2.39 -0.02 1.28 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 2.45 8.06 -2.39 -0.02 2.43 16 39 H 0.05 2.13 5.79 -2.39 -0.01 2.12 16 40 H 0.09 4.37 7.96 -2.91 -0.02 4.34 16 41 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -67.95 346.69 4.18 -63.76 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.95 Total: 18.32 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 4.96 Total: -31.57 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.82 Total: -81.85 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.94 Total: -16.69 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -67.95 4.18 -63.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347356469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.295 kcal (2) G-P(sol) polarization free energy of solvation -67.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds