Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32158 * 119.99920 * 2 1 4 4 C 1.32118 * 120.00206 * 180.27332 * 3 2 1 5 5 C 1.38395 * 119.99917 * 0.02562 * 4 3 2 6 6 N 1.32125 * 119.99204 * 359.97438 * 5 4 3 7 7 C 1.32145 * 120.00546 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00138 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47777 * 165.01617 * 8 7 6 10 10 C 1.52999 * 109.47275 * 285.02150 * 8 7 6 11 11 N 1.46900 * 109.47174 * 45.02076 * 8 7 6 12 12 C 1.46899 * 111.00075 * 155.00292 * 11 8 7 13 13 C 1.53005 * 109.46880 * 179.97438 * 12 11 8 14 14 C 1.53005 * 109.47196 * 299.99589 * 13 12 11 15 15 C 1.52995 * 109.47321 * 59.99687 * 13 12 11 16 16 C 1.53005 * 109.46994 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46940 * 179.97438 * 16 13 12 18 18 H 1.07994 * 120.00228 * 359.97438 * 17 16 13 19 19 C 1.37875 * 119.99956 * 179.97438 * 17 16 13 20 20 N 1.31505 * 120.00486 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99917 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47306 * 89.99478 * 21 19 17 23 23 H 1.48498 * 109.46875 * 209.99770 * 21 19 17 24 24 H 1.48504 * 109.46855 * 329.99401 * 21 19 17 25 25 H 1.08998 * 109.46721 * 269.72043 * 1 2 3 26 26 H 1.08990 * 109.47042 * 29.72100 * 1 2 3 27 27 H 1.09001 * 109.46926 * 149.72641 * 1 2 3 28 28 H 1.08005 * 120.00199 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.00091 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47387 * 59.99357 * 10 8 7 31 31 H 1.09000 * 109.47559 * 180.02562 * 10 8 7 32 32 H 1.09003 * 109.46555 * 299.99777 * 10 8 7 33 33 H 1.00903 * 110.99858 * 278.95495 * 11 8 7 34 34 H 1.08995 * 109.46994 * 299.99550 * 12 11 8 35 35 H 1.08996 * 109.47667 * 59.99962 * 12 11 8 36 36 H 1.09000 * 109.46653 * 60.00330 * 14 13 12 37 37 H 1.08997 * 109.47184 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46863 * 300.00561 * 14 13 12 39 39 H 1.09007 * 109.46805 * 59.99975 * 15 13 12 40 40 H 1.09003 * 109.47416 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47447 * 300.00232 * 15 13 12 42 42 H 1.09003 * 109.46731 * 299.99820 * 16 13 12 43 43 H 1.09004 * 109.47198 * 59.99936 * 16 13 12 44 44 H 0.96999 * 120.00904 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1810 -0.0539 -0.0117 6 7 3.5202 -1.1981 -0.0117 7 6 2.1988 -1.1981 -0.0063 8 6 1.4453 -2.5031 -0.0068 9 1 0.4049 -2.3222 0.2637 10 6 1.5082 -3.1278 -1.4021 11 7 2.0522 -3.4194 0.9678 12 6 1.0757 -4.4116 1.4366 13 6 1.7434 -5.3463 2.4473 14 6 2.9186 -6.0635 1.7798 15 6 2.2532 -4.5306 3.6371 16 6 0.7261 -6.3793 2.9362 17 6 1.3840 -7.3003 3.9312 18 1 2.4238 -7.1629 4.1888 19 6 0.6585 -8.3184 4.5127 20 7 1.2326 -9.1224 5.3806 21 14 -1.1399 -8.5565 4.0666 22 1 -1.2445 -9.4789 2.9077 23 1 -1.8651 -9.1344 5.2264 24 1 -1.7395 -7.2452 3.7113 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8924 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 4.0290 2.0800 -0.0050 29 1 5.2609 -0.0539 -0.0166 30 1 2.5485 -3.3087 -1.6726 31 1 0.9628 -4.0715 -1.4027 32 1 1.0578 -2.4478 -2.1252 33 1 2.8681 -3.8699 0.5811 34 1 0.2383 -3.9007 1.9118 35 1 0.7129 -4.9931 0.5891 36 1 3.6432 -5.3273 1.4318 37 1 3.3940 -6.7297 2.4996 38 1 2.5554 -6.6446 0.9321 39 1 1.4159 -4.0197 4.1127 40 1 2.7285 -5.1965 4.3573 41 1 2.9777 -3.7943 3.2892 42 1 -0.1108 -5.8680 3.4119 43 1 0.3626 -6.9606 2.0887 44 1 0.7223 -9.8389 5.7894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348249269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = 30.178825 kcal Electronic energy + Delta-G solvation = -21863.778797 eV Core-core repulsion = 18815.594953 eV Total energy + Delta-G solvation = -3048.183844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34159 -38.07744 -35.81261 -34.56155 -32.83511 -31.97606 -29.51349 -28.20611 -27.48481 -26.34675 -25.58287 -24.75750 -22.98655 -22.09239 -21.07618 -18.12561 -17.75191 -16.83547 -16.56366 -15.88537 -15.35584 -14.99247 -14.62915 -14.26177 -14.08764 -13.43095 -13.25875 -13.19511 -12.98242 -12.86542 -12.61795 -12.48382 -12.26440 -12.01601 -11.83037 -11.61765 -11.25413 -11.09003 -11.05409 -10.91091 -10.83309 -10.47902 -10.33388 -9.81108 -9.66400 -9.36404 -9.17487 -9.10098 -8.87456 -8.48494 -8.13698 -5.98522 -3.94635 0.64274 1.05390 3.32553 3.40465 3.43611 3.52167 3.86166 4.04857 4.16839 4.45105 4.49254 4.64281 4.88910 4.99436 5.06532 5.16282 5.18274 5.34436 5.34606 5.46764 5.53498 5.56847 5.63148 5.72670 5.78409 5.88135 5.97613 6.16184 6.26518 6.28009 6.44002 6.62899 6.71263 6.82447 7.08482 7.13472 7.18000 7.22127 7.31626 7.35279 7.48149 7.65516 7.71786 7.86958 8.61589 9.07735 9.64519 11.14659 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.003749 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.518466 B = 7465.906597 C = 7765.906864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.080 3.920 3 N -0.441 5.441 4 C 0.040 3.960 5 C 0.044 3.956 6 N -0.417 5.417 7 C 0.108 3.892 8 C 0.130 3.870 9 H 0.098 0.902 10 C -0.177 4.177 11 N -0.671 5.671 12 C 0.066 3.934 13 C -0.048 4.048 14 C -0.131 4.131 15 C -0.117 4.117 16 C -0.004 4.004 17 C -0.507 4.507 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.266 1.266 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.350 0.650 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.014 0.986 43 H 0.008 0.992 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 18.510 -14.080 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.061 4.061 3 N -0.157 5.157 4 C -0.119 4.119 5 C -0.116 4.116 6 N -0.132 5.132 7 C -0.034 4.034 8 C 0.018 3.982 9 H 0.116 0.884 10 C -0.236 4.236 11 N -0.303 5.303 12 C -0.062 4.062 13 C -0.048 4.048 14 C -0.188 4.188 15 C -0.175 4.175 16 C -0.042 4.042 17 C -0.544 4.544 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.191 1.191 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.194 18.769 -13.423 23.106 hybrid contribution -0.873 -0.740 -0.882 1.445 sum 0.321 18.029 -14.305 23.017 Atomic orbital electron populations 1.20768 0.88010 1.03704 1.03797 1.22054 0.98316 0.89046 0.96675 1.68260 1.09035 1.29097 1.09260 1.23687 0.90811 0.99835 0.97602 1.23760 1.01861 0.88841 0.97131 1.68224 1.08200 1.29402 1.07335 1.22051 0.90624 0.95796 0.94896 1.20462 0.97126 0.88794 0.91802 0.88376 1.22463 1.02993 1.01363 0.96819 1.60501 1.09211 1.21733 1.38889 1.22206 0.94396 0.92401 0.97205 1.20408 0.96145 0.94247 0.94000 1.21784 0.97442 0.99320 1.00284 1.21608 0.99917 0.98582 0.97359 1.19628 0.94496 0.93946 0.96085 1.21142 0.99048 1.11789 1.22469 0.90434 1.25017 0.97896 0.95805 0.94885 1.69903 1.36650 1.18566 1.29446 0.86849 0.86262 0.78640 0.77918 1.20526 1.21581 1.19122 0.89695 0.90245 0.90086 0.81691 0.81605 0.91720 0.91408 0.92391 0.82943 0.91580 0.95621 0.94448 0.91198 0.94147 0.94329 0.92159 0.93695 0.96732 0.97388 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.41 36.01 0.34 -0.57 16 2 C 0.08 0.92 6.79 -82.41 -0.56 0.36 16 3 N -0.44 -5.16 10.42 -9.28 -0.10 -5.26 16 4 C 0.04 0.39 11.23 -17.37 -0.19 0.19 16 5 C 0.04 0.44 11.23 -17.37 -0.19 0.24 16 6 N -0.42 -5.28 10.23 -9.29 -0.10 -5.37 16 7 C 0.11 1.33 5.73 -82.42 -0.47 0.85 16 8 C 0.13 1.52 2.46 -68.87 -0.17 1.35 16 9 H 0.10 1.05 5.59 -51.93 -0.29 0.76 16 10 C -0.18 -1.82 9.14 37.16 0.34 -1.48 16 11 N -0.67 -9.44 5.29 -107.95 -0.57 -10.01 16 12 C 0.07 1.05 4.45 -3.82 -0.02 1.03 16 13 C -0.05 -0.91 0.60 -154.50 -0.09 -1.00 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 16 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 17 C -0.51 -13.96 8.20 -34.44 -0.28 -14.25 16 18 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.91 -27.81 13.96 55.43 0.77 -27.04 16 21 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.58 6.41 -51.93 -0.33 0.25 16 28 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 29 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.07 0.69 7.45 -51.93 -0.39 0.31 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.35 5.02 6.51 -39.29 -0.26 4.76 16 34 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.03 0.39 7.44 -51.93 -0.39 0.00 16 36 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 37 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 41 H 0.04 0.81 7.60 -51.93 -0.39 0.42 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 43 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -31.75 344.70 -7.48 -39.23 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -7.12 Total: 2.04 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.90 Total: -15.79 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.01 Total: -47.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.75 -7.48 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348249269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.409 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds