Wall clock time and date at job start Mon Mar 30 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32158 * 119.99920 * 2 1 4 4 C 1.32118 * 120.00206 * 180.27332 * 3 2 1 5 5 C 1.38395 * 119.99917 * 0.02562 * 4 3 2 6 6 N 1.32125 * 119.99204 * 359.97438 * 5 4 3 7 7 C 1.32145 * 120.00546 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00138 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47777 * 165.01617 * 8 7 6 10 10 C 1.52999 * 109.47275 * 285.02150 * 8 7 6 11 11 N 1.46900 * 109.47174 * 45.02076 * 8 7 6 12 12 C 1.46899 * 111.00075 * 155.00292 * 11 8 7 13 13 C 1.53005 * 109.46880 * 179.97438 * 12 11 8 14 14 C 1.53005 * 109.47196 * 299.99589 * 13 12 11 15 15 C 1.52995 * 109.47321 * 59.99687 * 13 12 11 16 16 C 1.53005 * 109.46994 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46940 * 179.97438 * 16 13 12 18 18 H 1.07994 * 120.00228 * 359.97438 * 17 16 13 19 19 C 1.37875 * 119.99956 * 179.97438 * 17 16 13 20 20 N 1.31505 * 120.00486 * 179.97438 * 19 17 16 21 21 Si 1.86808 * 119.99917 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47306 * 89.99478 * 21 19 17 23 23 H 1.48498 * 109.46875 * 209.99770 * 21 19 17 24 24 H 1.48504 * 109.46855 * 329.99401 * 21 19 17 25 25 H 1.08998 * 109.46721 * 269.72043 * 1 2 3 26 26 H 1.08990 * 109.47042 * 29.72100 * 1 2 3 27 27 H 1.09001 * 109.46926 * 149.72641 * 1 2 3 28 28 H 1.08005 * 120.00199 * 180.02562 * 4 3 2 29 29 H 1.08000 * 120.00091 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47387 * 59.99357 * 10 8 7 31 31 H 1.09000 * 109.47559 * 180.02562 * 10 8 7 32 32 H 1.09003 * 109.46555 * 299.99777 * 10 8 7 33 33 H 1.00903 * 110.99858 * 278.95495 * 11 8 7 34 34 H 1.08995 * 109.46994 * 299.99550 * 12 11 8 35 35 H 1.08996 * 109.47667 * 59.99962 * 12 11 8 36 36 H 1.09000 * 109.46653 * 60.00330 * 14 13 12 37 37 H 1.08997 * 109.47184 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46863 * 300.00561 * 14 13 12 39 39 H 1.09007 * 109.46805 * 59.99975 * 15 13 12 40 40 H 1.09003 * 109.47416 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47447 * 300.00232 * 15 13 12 42 42 H 1.09003 * 109.46731 * 299.99820 * 16 13 12 43 43 H 1.09004 * 109.47198 * 59.99936 * 16 13 12 44 44 H 0.96999 * 120.00904 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1446 -0.0055 5 6 4.1810 -0.0539 -0.0117 6 7 3.5202 -1.1981 -0.0117 7 6 2.1988 -1.1981 -0.0063 8 6 1.4453 -2.5031 -0.0068 9 1 0.4049 -2.3222 0.2637 10 6 1.5082 -3.1278 -1.4021 11 7 2.0522 -3.4194 0.9678 12 6 1.0757 -4.4116 1.4366 13 6 1.7434 -5.3463 2.4473 14 6 2.9186 -6.0635 1.7798 15 6 2.2532 -4.5306 3.6371 16 6 0.7261 -6.3793 2.9362 17 6 1.3840 -7.3003 3.9312 18 1 2.4238 -7.1629 4.1888 19 6 0.6585 -8.3184 4.5127 20 7 1.2326 -9.1224 5.3806 21 14 -1.1399 -8.5565 4.0666 22 1 -1.2445 -9.4789 2.9077 23 1 -1.8651 -9.1344 5.2264 24 1 -1.7395 -7.2452 3.7113 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8924 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 4.0290 2.0800 -0.0050 29 1 5.2609 -0.0539 -0.0166 30 1 2.5485 -3.3087 -1.6726 31 1 0.9628 -4.0715 -1.4027 32 1 1.0578 -2.4478 -2.1252 33 1 2.8681 -3.8699 0.5811 34 1 0.2383 -3.9007 1.9118 35 1 0.7129 -4.9931 0.5891 36 1 3.6432 -5.3273 1.4318 37 1 3.3940 -6.7297 2.4996 38 1 2.5554 -6.6446 0.9321 39 1 1.4159 -4.0197 4.1127 40 1 2.7285 -5.1965 4.3573 41 1 2.9777 -3.7943 3.2892 42 1 -0.1108 -5.8680 3.4119 43 1 0.3626 -6.9606 2.0887 44 1 0.7223 -9.8389 5.7894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348249269.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:51 Heat of formation + Delta-G solvation = 8.878872 kcal Electronic energy + Delta-G solvation = -21864.702432 eV Core-core repulsion = 18815.594953 eV Total energy + Delta-G solvation = -3049.107479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12346 -39.39323 -37.02607 -35.34660 -34.55221 -33.29437 -30.66751 -29.26599 -28.90538 -27.92370 -26.70733 -25.86752 -24.02070 -23.56311 -22.02321 -19.58879 -18.85130 -18.63820 -17.50674 -16.73539 -16.40578 -16.15033 -15.89945 -15.71366 -15.31288 -14.82778 -14.64943 -14.29752 -14.11307 -13.89483 -13.68416 -13.58146 -13.44368 -13.27328 -12.92993 -12.80997 -12.67202 -12.44093 -12.43666 -12.21934 -12.06819 -11.98777 -11.89217 -11.71085 -11.35669 -10.99538 -10.82862 -10.68183 -9.96382 -9.91578 -9.19856 -8.19814 -6.20378 -0.11993 0.25515 1.37605 1.39728 1.50807 2.41524 2.73250 3.12409 3.15364 3.26561 3.32187 3.67674 3.80990 4.06366 4.17235 4.18439 4.27964 4.34397 4.37509 4.44645 4.49486 4.69306 4.73722 4.77467 4.81100 4.83250 4.91840 4.95849 5.05524 5.10356 5.13882 5.18281 5.20303 5.38719 5.45549 5.53080 5.54993 5.63663 5.76381 5.83265 6.12413 6.42734 6.46317 6.53522 6.87310 6.93692 7.42101 8.96625 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.003749 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.518466 B = 7465.906597 C = 7765.906864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.069 3.931 3 N -0.463 5.463 4 C 0.043 3.957 5 C 0.037 3.963 6 N -0.444 5.444 7 C 0.090 3.910 8 C 0.132 3.868 9 H 0.110 0.890 10 C -0.170 4.170 11 N -0.677 5.677 12 C 0.080 3.920 13 C -0.047 4.047 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.002 4.002 17 C -0.504 4.504 18 H 0.041 0.959 19 C -0.001 4.001 20 N -0.957 5.957 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.246 1.246 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.199 0.801 29 H 0.194 0.806 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.347 0.653 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 20.356 -16.079 25.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.071 4.071 3 N -0.179 5.179 4 C -0.117 4.117 5 C -0.123 4.123 6 N -0.159 5.159 7 C -0.051 4.051 8 C 0.020 3.980 9 H 0.128 0.872 10 C -0.229 4.229 11 N -0.309 5.309 12 C -0.049 4.049 13 C -0.048 4.048 14 C -0.181 4.181 15 C -0.164 4.164 16 C -0.039 4.039 17 C -0.542 4.542 18 H 0.059 0.941 19 C -0.196 4.196 20 N -0.599 5.599 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.169 1.169 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.215 0.785 29 H 0.211 0.789 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.076 20.636 -15.442 25.774 hybrid contribution -0.314 -1.223 -0.244 1.286 sum -0.389 19.413 -15.686 24.961 Atomic orbital electron populations 1.20840 0.86427 1.04742 1.04171 1.22410 0.99537 0.88821 0.96375 1.68329 1.10111 1.29348 1.10097 1.24257 0.90406 1.01140 0.95876 1.24268 1.03212 0.88394 0.96401 1.68193 1.08692 1.30855 1.08134 1.22115 0.90784 0.96125 0.96082 1.20521 0.97470 0.88123 0.91844 0.87230 1.22380 1.02566 1.01639 0.96312 1.60414 1.08876 1.21303 1.40313 1.21940 0.94305 0.92195 0.96477 1.20341 0.95536 0.94055 0.94841 1.21681 0.97641 0.99305 0.99436 1.21488 0.99942 0.98131 0.96882 1.19586 0.95162 0.94156 0.95029 1.21446 0.97758 1.12241 1.22783 0.94080 1.25955 1.03003 0.95708 0.94974 1.70069 1.38725 1.19718 1.31379 0.85769 0.80248 0.79540 0.77738 1.19502 1.21669 1.16934 0.89529 0.89607 0.88677 0.78454 0.78890 0.92643 0.91184 0.91001 0.83231 0.91139 0.94500 0.92082 0.94745 0.93377 0.94340 0.95536 0.92278 0.96661 0.96679 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.41 71.24 0.67 -0.90 16 2 C 0.07 1.45 6.79 42.54 0.29 1.74 16 3 N -0.46 -9.95 10.42 -183.28 -1.91 -11.86 16 4 C 0.04 0.73 11.23 84.69 0.95 1.68 16 5 C 0.04 0.66 11.23 84.69 0.95 1.61 16 6 N -0.44 -10.47 10.23 -183.30 -1.87 -12.35 16 7 C 0.09 2.04 5.73 42.54 0.24 2.28 16 8 C 0.13 2.76 2.46 44.17 0.11 2.87 16 9 H 0.11 2.02 5.59 -2.39 -0.01 2.00 16 10 C -0.17 -3.07 9.14 71.98 0.66 -2.41 16 11 N -0.68 -17.56 5.29 -495.46 -2.62 -20.17 16 12 C 0.08 2.32 4.45 86.31 0.38 2.70 16 13 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 14 C -0.12 -4.49 7.89 71.98 0.57 -3.93 16 15 C -0.11 -4.17 8.06 71.98 0.58 -3.59 16 16 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 17 C -0.50 -28.41 8.20 25.60 0.21 -28.20 16 18 H 0.04 2.56 5.92 -2.91 -0.02 2.54 16 19 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 20 N -0.96 -60.56 13.96 21.45 0.30 -60.26 16 21 Si 0.94 44.40 27.47 68.60 1.88 46.29 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.11 6.41 -2.39 -0.02 1.10 16 28 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.07 1.23 7.45 -2.39 -0.02 1.21 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.35 9.26 6.51 -89.69 -0.58 8.67 16 34 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 35 H 0.04 1.00 7.44 -2.39 -0.02 0.98 16 36 H 0.06 1.91 6.57 -2.39 -0.02 1.89 16 37 H 0.03 1.47 6.62 -2.39 -0.02 1.46 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.03 1.17 6.62 -2.39 -0.02 1.16 16 41 H 0.06 2.10 7.60 -2.39 -0.02 2.09 16 42 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 43 H 0.01 0.66 7.57 -2.39 -0.02 0.65 16 44 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -69.89 344.70 2.26 -67.63 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.35 Total: 18.24 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 6.14 Total: -27.51 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -6.11 Total: -104.64 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -69.89 2.26 -67.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348249269.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.507 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds