Wall clock time and date at job start Mon Mar 30 2020 02:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.47108 * 2 1 4 4 C 1.36937 * 119.99765 * 264.29015 * 3 2 1 5 5 H 1.08002 * 119.99472 * 188.63867 * 4 3 2 6 6 C 1.38800 * 120.00173 * 8.63782 * 4 3 2 7 7 N 1.31615 * 120.00423 * 24.60310 * 6 4 3 8 8 Si 1.86806 * 120.00005 * 204.60545 * 6 4 3 9 9 H 1.48494 * 109.46999 * 85.02496 * 8 6 4 10 10 H 1.48500 * 109.47164 * 205.02657 * 8 6 4 11 11 H 1.48502 * 109.47072 * 325.02493 * 8 6 4 12 12 C 1.46501 * 119.99718 * 84.28943 * 3 2 1 13 13 C 1.53005 * 109.46838 * 269.99870 * 12 3 2 14 14 C 1.53004 * 109.46724 * 180.02562 * 13 12 3 15 15 O 1.42897 * 109.46980 * 180.02562 * 14 13 12 16 16 C 1.35900 * 117.00102 * 180.02562 * 15 14 13 17 17 C 1.38740 * 120.04821 * 270.27297 * 16 15 14 18 18 C 1.50692 * 120.03138 * 359.97438 * 17 16 15 19 19 C 1.38149 * 119.93771 * 180.25286 * 17 16 15 20 20 C 1.38270 * 120.05685 * 359.44867 * 19 17 16 21 21 C 1.38268 * 120.10833 * 0.29986 * 20 19 17 22 22 C 1.38146 * 120.05924 * 359.97438 * 21 20 19 23 23 C 1.50702 * 120.02653 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47073 * 300.00124 * 1 2 3 26 26 H 1.09002 * 109.46936 * 60.00284 * 1 2 3 27 27 H 1.09000 * 109.47073 * 239.99876 * 2 1 3 28 28 H 1.09001 * 109.46751 * 120.00235 * 2 1 3 29 29 H 0.97002 * 120.00424 * 179.97438 * 7 6 4 30 30 H 1.08995 * 109.46717 * 149.99892 * 12 3 2 31 31 H 1.08996 * 109.47185 * 29.99702 * 12 3 2 32 32 H 1.09003 * 109.47213 * 60.00229 * 13 12 3 33 33 H 1.08996 * 109.47096 * 299.99887 * 13 12 3 34 34 H 1.09003 * 109.47121 * 60.00134 * 14 13 12 35 35 H 1.08996 * 109.47210 * 299.99778 * 14 13 12 36 36 H 1.09003 * 109.47468 * 270.24990 * 18 17 16 37 37 H 1.08995 * 109.47438 * 30.25408 * 18 17 16 38 38 H 1.09007 * 109.46816 * 150.25520 * 18 17 16 39 39 H 1.08002 * 119.96860 * 179.72560 * 19 17 16 40 40 H 1.07999 * 119.94421 * 180.27753 * 20 19 17 41 41 H 1.08000 * 119.96451 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.46985 * 90.00092 * 23 22 21 43 43 H 1.09001 * 109.46831 * 210.00196 * 23 22 21 44 44 H 1.09004 * 109.46758 * 329.99781 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8471 2.9502 -1.1713 6 6 2.0732 1.3645 -2.3873 7 7 1.0960 0.4858 -2.4602 8 14 3.0771 1.7731 -3.9087 9 1 4.3047 0.9378 -3.9308 10 1 2.2690 1.4976 -5.1238 11 1 3.4557 3.2088 -3.8811 12 6 2.1435 2.1139 1.2625 13 6 0.8337 2.8474 1.5584 14 6 0.9647 3.6131 2.8766 15 8 -0.2588 4.2977 3.1533 16 6 -0.3104 5.0313 4.2961 17 6 -0.7336 4.4444 5.4798 18 6 -1.1370 2.9926 5.4997 19 6 -0.7902 5.1936 6.6391 20 6 -0.4148 6.5243 6.6227 21 6 0.0122 7.1100 5.4453 22 6 0.0653 6.3666 4.2821 23 6 0.5313 7.0056 2.9993 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8968 0.0507 -3.3040 30 1 2.9552 2.8370 1.1839 31 1 2.3578 1.4133 2.0694 32 1 0.0220 2.1242 1.6369 33 1 0.6194 3.5480 0.7514 34 1 1.7763 4.3363 2.7976 35 1 1.1792 2.9128 3.6837 36 1 -2.2025 2.9086 5.2858 37 1 -0.5707 2.4477 4.7445 38 1 -0.9296 2.5714 6.4835 39 1 -1.1237 4.7384 7.5600 40 1 -0.4555 7.1072 7.5310 41 1 0.3053 8.1495 5.4352 42 1 1.6111 6.8894 2.9069 43 1 0.0403 6.5235 2.1540 44 1 0.2795 8.0661 3.0093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353136175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:08 Heat of formation + Delta-G solvation = -2.288575 kcal Electronic energy + Delta-G solvation = -21673.033562 eV Core-core repulsion = 18591.149075 eV Total energy + Delta-G solvation = -3081.884487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.17377 -37.40511 -36.19031 -33.62405 -32.68562 -31.13858 -30.39555 -28.95506 -27.08888 -26.68782 -25.14295 -23.30090 -21.76010 -20.94755 -20.91655 -20.07888 -17.58012 -16.77111 -16.43380 -15.53426 -15.06818 -14.70852 -14.64273 -14.07536 -13.67555 -13.41141 -13.19756 -13.14115 -13.03551 -12.73520 -12.58338 -12.11606 -11.93593 -11.79988 -11.63360 -11.48868 -11.33197 -11.27185 -10.92980 -10.79698 -10.64074 -10.34338 -10.26902 -9.79686 -9.62618 -9.48262 -9.26904 -8.66139 -8.50290 -8.31571 -6.86300 -5.73061 -3.04264 1.17501 1.25354 3.40695 3.43195 3.49694 3.49838 4.01342 4.54091 4.71448 4.75895 4.87193 5.16137 5.32056 5.35447 5.37776 5.39793 5.50070 5.53362 5.60861 5.62923 5.66248 5.74621 5.76620 5.95996 6.07074 6.08514 6.24204 6.31699 6.36799 6.40726 6.43477 6.55438 6.63355 6.76883 6.81577 6.96761 6.99462 7.17934 7.25574 7.70186 7.77511 7.81942 8.15310 8.40222 9.27966 9.90762 10.35741 11.30805 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.003712 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.508572 B = 7540.663455 C = 8292.119719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.167 3.833 3 N -0.595 5.595 4 C -0.249 4.249 5 H 0.073 0.927 6 C -0.003 4.003 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.157 3.843 13 C -0.141 4.141 14 C 0.072 3.928 15 O -0.333 6.333 16 C 0.101 3.899 17 C -0.102 4.102 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.114 4.114 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.002 0.998 29 H 0.251 0.749 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 8.831 16.909 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 N -0.316 5.316 4 C -0.378 4.378 5 H 0.091 0.909 6 C -0.200 4.200 7 N -0.542 5.542 8 Si 0.727 3.273 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.029 3.971 13 C -0.181 4.181 14 C -0.003 4.003 15 O -0.250 6.250 16 C 0.057 3.943 17 C -0.103 4.103 18 C -0.168 4.168 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.135 4.135 22 C -0.101 4.101 23 C -0.171 4.171 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.595 8.689 16.594 18.910 hybrid contribution 0.413 0.329 -0.610 0.807 sum -2.182 9.017 15.983 18.481 Atomic orbital electron populations 1.22419 0.99281 0.98118 1.01213 1.20811 0.92522 0.84413 0.98102 1.44275 1.75624 1.10182 1.01553 1.19288 1.31245 1.03659 0.83592 0.90866 1.24717 0.97954 1.00067 0.97289 1.70159 1.27284 1.31946 1.24847 0.86372 0.80311 0.77822 0.82806 1.21651 1.21989 1.20782 1.20663 0.93578 0.94028 0.88832 1.22554 1.02444 0.99449 0.93664 1.22925 0.84448 0.94246 0.98665 1.86071 1.37016 1.64255 1.37661 1.18474 0.99611 0.89984 0.86225 1.20273 1.00432 0.97058 0.92504 1.20714 1.02104 0.91560 1.02452 1.20899 1.01098 0.94172 0.97374 1.21081 1.00177 0.95137 0.97970 1.20911 1.00938 0.99696 0.91982 1.20279 0.99596 0.93951 0.96319 1.20725 1.01428 1.00089 0.94837 0.96340 0.96671 0.89157 0.89491 0.98016 0.93836 0.93712 0.94396 0.91302 0.91187 0.93493 0.93620 0.90968 0.90965 0.91786 0.85959 0.86080 0.85946 0.91250 0.90450 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.58 37.16 0.36 -3.18 16 2 C 0.17 4.04 5.64 -4.04 -0.02 4.02 16 3 N -0.60 -14.68 2.54 -173.23 -0.44 -15.12 16 4 C -0.25 -6.71 9.70 -15.06 -0.15 -6.86 16 5 H 0.07 1.94 7.93 -52.49 -0.42 1.53 16 6 C 0.00 -0.09 4.91 -17.44 -0.09 -0.17 16 7 N -0.90 -25.12 8.54 55.49 0.47 -24.64 16 8 Si 0.90 21.58 29.62 -169.99 -5.03 16.54 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.16 3.17 5.71 -4.04 -0.02 3.15 16 13 C -0.14 -2.66 5.79 -26.73 -0.15 -2.81 16 14 C 0.07 1.13 5.69 37.16 0.21 1.34 16 15 O -0.33 -5.45 8.33 -19.43 -0.16 -5.62 16 16 C 0.10 1.47 5.67 -39.22 -0.22 1.25 16 17 C -0.10 -1.32 5.89 -104.47 -0.62 -1.94 16 18 C -0.11 -1.30 9.79 36.00 0.35 -0.94 16 19 C -0.12 -1.28 9.70 -39.60 -0.38 -1.66 16 20 C -0.13 -1.28 10.04 -39.56 -0.40 -1.67 16 21 C -0.12 -1.28 9.70 -39.60 -0.38 -1.67 16 22 C -0.10 -1.32 5.89 -104.48 -0.62 -1.93 16 23 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.01 0.32 5.98 -51.93 -0.31 0.01 16 26 H 0.09 2.41 6.28 -51.93 -0.33 2.08 16 27 H 0.09 2.34 5.87 -51.93 -0.31 2.04 16 28 H 0.00 0.04 7.97 -51.93 -0.41 -0.38 16 29 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 31 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 32 H 0.07 1.39 5.93 -51.93 -0.31 1.08 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.67 7.23 -51.93 -0.38 0.29 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 38 H 0.06 0.60 8.09 -51.92 -0.42 0.18 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.05 7.53 -51.93 -0.39 0.66 16 44 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -28.87 350.21 -9.02 -37.89 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.36 Total: -0.25 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.78 Total: -14.08 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.03 Total: -39.76 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.16 Total: -5.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.87 -9.02 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353136175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.600 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds