Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46907 * 110.99769 * 66.04707 * 6 5 4 8 8 C 1.46896 * 111.00152 * 189.99788 * 6 5 4 9 9 C 1.50706 * 109.47293 * 170.00150 * 8 6 5 10 10 H 1.08003 * 119.99552 * 0.02562 * 9 8 6 11 11 C 1.37871 * 119.99706 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99597 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00465 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47040 * 90.00134 * 13 11 9 15 15 H 1.48498 * 109.47401 * 210.00290 * 13 11 9 16 16 H 1.48502 * 109.47229 * 330.00277 * 13 11 9 17 17 O 1.42902 * 109.46684 * 240.00911 * 2 1 3 18 18 C 1.42897 * 114.00508 * 90.00033 * 17 2 1 19 19 C 1.50698 * 109.47250 * 179.97438 * 18 17 2 20 20 C 1.38238 * 120.00309 * 269.72560 * 19 18 17 21 21 C 1.38234 * 119.99875 * 179.77050 * 20 19 18 22 22 C 1.38230 * 119.99858 * 0.50333 * 21 20 19 23 23 C 1.38233 * 120.00393 * 359.75145 * 22 21 20 24 24 C 1.38232 * 119.99993 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 27 27 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 28 28 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 29 29 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 1.08995 * 109.47407 * 59.99898 * 7 6 5 33 33 H 1.09006 * 109.46770 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.46848 * 299.99626 * 7 6 5 35 35 H 1.09006 * 109.47466 * 290.00215 * 8 6 5 36 36 H 1.09000 * 109.46995 * 50.00413 * 8 6 5 37 37 H 0.97004 * 119.99714 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.47218 * 300.00062 * 18 17 2 39 39 H 1.09008 * 109.47047 * 59.99707 * 18 17 2 40 40 H 1.07999 * 119.99876 * 0.02562 * 20 19 18 41 41 H 1.07997 * 120.00132 * 180.23575 * 21 20 19 42 42 H 1.08004 * 119.99859 * 179.72785 * 22 21 20 43 43 H 1.08003 * 120.00239 * 179.97438 * 23 22 21 44 44 H 1.07995 * 120.00328 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0545 -1.3056 2.5131 7 6 3.8099 -2.7514 2.4234 8 6 5.4789 -1.0256 2.7380 9 6 5.8845 -1.5427 4.0942 10 1 5.1570 -2.0308 4.7257 11 6 7.1844 -1.3925 4.5286 12 7 7.5385 -1.8441 5.7119 13 14 8.4428 -0.5488 3.4360 14 1 8.4432 0.9096 3.7163 15 1 9.7912 -1.1063 3.7121 16 1 8.0945 -0.7788 2.0108 17 8 2.0062 -0.6735 -1.1669 18 6 2.1999 0.1831 -2.2941 19 6 2.7012 -0.6279 -3.4612 20 6 4.0598 -0.7953 -3.6539 21 6 4.5194 -1.5433 -4.7217 22 6 3.6207 -2.1150 -5.6027 23 6 2.2622 -1.9432 -5.4131 24 6 1.8024 -1.2001 -4.3420 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.7516 -1.7716 1.2053 29 1 1.6054 -0.2620 2.1368 30 1 3.8532 0.4368 1.3572 31 1 3.9994 -1.0729 0.4257 32 1 4.3267 -3.1540 1.5523 33 1 4.1824 -3.2394 3.3241 34 1 2.7395 -2.9335 2.3273 35 1 6.0722 -1.5196 1.9684 36 1 5.6491 0.0501 2.6934 37 1 8.4530 -1.7381 6.0177 38 1 1.2537 0.6550 -2.5588 39 1 2.9319 0.9516 -2.0450 40 1 4.7620 -0.3453 -2.9678 41 1 5.5807 -1.6773 -4.8701 42 1 3.9799 -2.6957 -6.4395 43 1 1.5601 -2.3896 -6.1017 44 1 0.7412 -1.0655 -4.1940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354864851.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -24.963040 kcal Electronic energy + Delta-G solvation = -21178.852288 eV Core-core repulsion = 18095.984562 eV Total energy + Delta-G solvation = -3082.867726 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60022 -38.35349 -36.63353 -33.49751 -32.37558 -31.35334 -31.08521 -29.16072 -27.42807 -26.23351 -25.17981 -22.76907 -22.39115 -21.50389 -20.75611 -19.91407 -17.25984 -16.83164 -16.72674 -15.83133 -15.63290 -14.85746 -14.66003 -14.52676 -14.17959 -13.97899 -13.59898 -13.42637 -13.19722 -12.86480 -12.69270 -12.57543 -12.25925 -12.18338 -11.98920 -11.39799 -11.29422 -11.20888 -11.02862 -10.99385 -10.81106 -10.46489 -10.39517 -10.08866 -9.86782 -9.53791 -9.21897 -9.10035 -9.01743 -8.53644 -7.28612 -6.02044 -3.98785 1.08219 1.22193 3.30245 3.37423 3.39487 3.40280 3.96358 4.44877 4.58701 4.61861 4.74282 4.82389 4.93135 4.99784 5.07705 5.12989 5.18984 5.28827 5.34696 5.36654 5.46649 5.54346 5.67307 5.77789 5.79892 5.82899 5.85325 6.08240 6.12624 6.21306 6.25222 6.31075 6.31756 6.42042 6.44338 6.53670 6.77464 6.79364 6.93534 7.06020 7.22552 7.64330 7.97769 8.13039 8.71049 9.06860 9.60150 11.11212 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003848 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.422395 B = 7274.304382 C = 8418.398704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.060 0.940 4 C -0.111 4.111 5 C 0.055 3.945 6 N -0.533 5.533 7 C 0.036 3.964 8 C 0.162 3.838 9 C -0.507 4.507 10 H 0.081 0.919 11 C 0.067 3.933 12 N -0.902 5.902 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.268 1.268 17 O -0.371 6.371 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.100 4.100 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.010 0.990 33 H 0.077 0.923 34 H 0.049 0.951 35 H -0.013 1.013 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 3.668 -21.875 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.074 4.074 6 N -0.257 5.257 7 C -0.112 4.112 8 C 0.035 3.965 9 C -0.546 4.546 10 H 0.099 0.901 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.702 3.298 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.193 1.193 17 O -0.291 6.291 18 C 0.025 3.975 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.118 4.118 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.005 0.995 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.757 3.637 -21.340 25.127 hybrid contribution 1.218 0.390 -1.192 1.748 sum -11.539 4.027 -22.532 25.634 Atomic orbital electron populations 1.22271 0.96098 1.02757 1.01833 1.22192 0.93213 0.96092 0.85746 0.92220 1.21717 0.96529 1.01515 0.95110 1.22034 0.94148 0.98883 0.92311 1.61948 1.20428 1.08798 1.34537 1.22261 0.99051 0.88987 1.00910 1.20170 0.83317 0.95898 0.97089 1.21065 0.95874 1.37700 0.99917 0.90115 1.24903 0.98154 0.95425 0.94933 1.69901 1.18589 1.47033 1.18590 0.86868 0.81156 0.80173 0.81612 1.20160 1.21204 1.19314 1.88045 1.86626 1.34897 1.19527 1.21313 0.99278 0.91766 0.85129 1.19648 0.93623 0.99692 0.95730 1.21141 0.95046 0.98039 0.97320 1.21179 0.99882 0.97887 0.95139 1.21190 0.93457 0.99536 0.99345 1.21130 0.95743 0.99380 0.98136 1.21048 0.99402 0.96877 0.94522 0.91797 0.91446 0.92911 0.91116 0.89878 0.92048 0.95263 0.97115 0.90386 0.93226 0.99509 0.96016 0.92717 0.92754 0.92510 0.85808 0.85881 0.86099 0.86032 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.53 37.16 0.35 -1.36 16 2 C 0.09 1.04 2.72 -26.74 -0.07 0.96 16 3 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 4 C -0.11 -1.61 4.84 -26.74 -0.13 -1.74 16 5 C 0.05 0.98 4.85 -3.83 -0.02 0.97 16 6 N -0.53 -11.67 4.75 -244.36 -1.16 -12.83 16 7 C 0.04 0.74 9.14 60.07 0.55 1.29 16 8 C 0.16 4.08 3.79 -4.98 -0.02 4.06 16 9 C -0.51 -14.78 9.01 -34.44 -0.31 -15.09 16 10 H 0.08 2.55 7.37 -52.48 -0.39 2.16 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 13 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 17 O -0.37 -4.99 9.51 -35.23 -0.33 -5.33 16 18 C 0.10 1.11 5.87 36.00 0.21 1.32 16 19 C -0.09 -0.99 5.51 -104.62 -0.58 -1.57 16 20 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 21 C -0.12 -1.26 10.05 -39.59 -0.40 -1.65 16 22 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 23 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16 24 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 28 H 0.07 1.07 6.55 -51.93 -0.34 0.73 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 31 H 0.03 0.55 7.80 -51.93 -0.41 0.14 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 34 H 0.05 0.87 6.47 -51.93 -0.34 0.53 16 35 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 36 H 0.02 0.55 7.36 -51.93 -0.38 0.16 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.05 0.50 7.81 -51.93 -0.41 0.09 16 39 H 0.06 0.59 8.03 -51.92 -0.42 0.17 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -32.28 356.81 -9.68 -41.96 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.59 Total: -2.26 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.07 Total: -16.88 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.39 Total: -40.09 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.33 Total: -5.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.28 -9.68 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354864851.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.998 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds