Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47083 * 2 1 4 4 C 1.36935 * 119.99657 * 263.77940 * 3 2 1 5 5 H 1.08001 * 119.99984 * 142.61856 * 4 3 2 6 6 C 1.38816 * 120.00399 * 322.62343 * 4 3 2 7 7 N 1.31620 * 120.00145 * 157.38862 * 6 4 3 8 8 Si 1.86798 * 119.99687 * 337.38447 * 6 4 3 9 9 H 1.48496 * 109.47368 * 95.71727 * 8 6 4 10 10 H 1.48504 * 109.47080 * 215.71897 * 8 6 4 11 11 H 1.48501 * 109.47173 * 335.71586 * 8 6 4 12 12 C 1.46498 * 120.00348 * 83.78650 * 3 2 1 13 13 C 1.52996 * 109.47231 * 89.99557 * 12 3 2 14 14 C 1.52999 * 109.47189 * 180.02562 * 13 12 3 15 15 H 1.08998 * 109.47109 * 304.99965 * 14 13 12 16 16 C 1.53007 * 109.46971 * 185.00054 * 14 13 12 17 17 O 1.42902 * 109.47140 * 65.00361 * 14 13 12 18 18 C 1.42899 * 113.99726 * 209.99875 * 17 14 13 19 19 C 1.50701 * 109.47094 * 179.97438 * 18 17 14 20 20 C 1.38231 * 120.00437 * 269.72803 * 19 18 17 21 21 C 1.38236 * 120.00162 * 179.76057 * 20 19 18 22 22 C 1.38244 * 119.99663 * 0.51426 * 21 20 19 23 23 C 1.38233 * 119.99721 * 359.73998 * 22 21 20 24 24 C 1.38228 * 120.00643 * 0.02562 * 23 22 21 25 25 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47437 * 300.00660 * 1 2 3 27 27 H 1.09004 * 109.46634 * 60.00261 * 1 2 3 28 28 H 1.08998 * 109.47437 * 239.99340 * 2 1 3 29 29 H 1.09004 * 109.46634 * 119.99739 * 2 1 3 30 30 H 0.96998 * 119.99697 * 180.02562 * 7 6 4 31 31 H 1.08991 * 109.47072 * 209.99680 * 12 3 2 32 32 H 1.08999 * 109.46670 * 330.00025 * 12 3 2 33 33 H 1.09001 * 109.47425 * 300.00572 * 13 12 3 34 34 H 1.09006 * 109.47200 * 59.99987 * 13 12 3 35 35 H 1.09008 * 109.46845 * 179.97438 * 16 14 13 36 36 H 1.08998 * 109.47132 * 299.99897 * 16 14 13 37 37 H 1.09002 * 109.46974 * 60.00327 * 16 14 13 38 38 H 1.09000 * 109.47455 * 299.99913 * 18 17 14 39 39 H 1.09001 * 109.47152 * 59.99870 * 18 17 14 40 40 H 1.07996 * 119.99997 * 0.02562 * 20 19 18 41 41 H 1.07991 * 120.00589 * 180.23220 * 21 20 19 42 42 H 1.07994 * 119.99784 * 179.71682 * 22 21 20 43 43 H 1.08001 * 119.99521 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00736 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3677 1.9839 -1.1789 5 1 2.1498 3.0299 -1.3360 6 6 3.0018 1.2503 -2.1723 7 7 2.9452 1.6516 -3.4245 8 14 3.9354 -0.3065 -1.7317 9 1 3.0564 -1.4857 -1.9367 10 1 5.1349 -0.4266 -2.5990 11 1 4.3573 -0.2449 -0.3092 12 6 2.1331 2.1177 1.2612 13 6 3.5249 1.8960 1.8565 14 6 3.6445 2.6646 3.1740 15 1 3.4064 3.7147 3.0049 16 6 5.0741 2.5451 3.7062 17 8 2.7334 2.1173 4.1291 18 6 2.2506 3.0665 5.0820 19 6 1.3025 2.3844 6.0344 20 6 -0.0493 2.3381 5.7492 21 6 -0.9183 1.7082 6.6204 22 6 -0.4368 1.1338 7.7821 23 6 0.9143 1.1848 8.0697 24 6 1.7839 1.8104 7.1962 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.3880 1.1388 -4.1186 31 1 1.9823 3.1811 1.0760 32 1 1.3776 1.7599 1.9608 33 1 3.6758 0.8325 2.0417 34 1 4.2805 2.2536 1.1569 35 1 5.1594 3.0931 4.6446 36 1 5.3122 1.4950 3.8752 37 1 5.7691 2.9626 2.9776 38 1 3.0905 3.4810 5.6396 39 1 1.7279 3.8694 4.5622 40 1 -0.4260 2.7903 4.8437 41 1 -1.9739 1.6687 6.3959 42 1 -1.1163 0.6457 8.4649 43 1 1.2904 0.7364 8.9775 44 1 2.8395 1.8506 7.4211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354869059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = -27.296336 kcal Electronic energy + Delta-G solvation = -21651.642077 eV Core-core repulsion = 18568.673172 eV Total energy + Delta-G solvation = -3082.968905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33626 -39.22469 -37.96070 -34.59454 -33.74287 -32.39754 -31.76970 -31.33398 -29.44581 -26.98264 -25.87366 -24.50733 -23.45319 -22.37859 -22.21896 -21.49303 -18.71507 -18.01141 -17.55157 -17.21003 -16.69097 -16.37149 -16.07858 -15.37365 -15.28383 -15.16285 -14.78598 -14.39561 -14.25088 -14.18707 -13.80329 -13.67308 -13.54300 -13.32324 -13.17781 -12.88229 -12.75977 -12.60017 -12.40169 -12.29388 -11.89317 -11.78740 -11.74745 -11.66897 -11.39823 -11.35988 -10.63170 -10.47462 -9.80283 -9.72999 -8.75304 -8.19382 -5.55171 0.37089 0.51960 1.29853 1.39980 1.52278 2.42862 2.63513 3.05472 3.17988 3.35794 3.88500 3.93511 4.09728 4.16959 4.19108 4.24875 4.31362 4.35131 4.39159 4.44650 4.49526 4.58753 4.67482 4.70666 4.78730 4.81892 4.87437 4.92434 4.95779 5.06828 5.10158 5.15597 5.17671 5.22979 5.30459 5.43219 5.50734 5.57256 5.62629 5.70792 5.96931 6.12046 6.18307 6.37251 7.01347 7.66040 8.10190 9.00875 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021903 B = 0.004200 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.046312 B = 6664.520208 C = 7309.082853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.124 3.876 3 N -0.618 5.618 4 C -0.252 4.252 5 H 0.042 0.958 6 C -0.018 4.018 7 N -0.950 5.950 8 Si 0.937 3.063 9 H -0.278 1.278 10 H -0.308 1.308 11 H -0.257 1.257 12 C 0.157 3.843 13 C -0.127 4.127 14 C 0.094 3.906 15 H 0.069 0.931 16 C -0.167 4.167 17 O -0.390 6.390 18 C 0.099 3.901 19 C -0.104 4.104 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.113 4.113 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.052 0.948 30 H 0.262 0.738 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 0.210 24.733 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.001 4.001 3 N -0.342 5.342 4 C -0.382 4.382 5 H 0.060 0.940 6 C -0.214 4.214 7 N -0.594 5.594 8 Si 0.766 3.234 9 H -0.206 1.206 10 H -0.237 1.237 11 H -0.181 1.181 12 C 0.032 3.968 13 C -0.167 4.167 14 C 0.036 3.964 15 H 0.087 0.913 16 C -0.225 4.225 17 O -0.310 6.310 18 C 0.023 3.977 19 C -0.104 4.104 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.131 4.131 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.995 0.006 24.589 24.771 hybrid contribution 0.670 -0.340 -0.708 1.033 sum -2.324 -0.335 23.881 23.996 Atomic orbital electron populations 1.22110 0.97000 1.01111 1.01003 1.21209 0.94322 0.85810 0.98728 1.44313 1.74940 1.11970 1.02948 1.18678 1.31833 0.95794 0.91904 0.94036 1.26014 0.98963 1.01403 0.95000 1.69996 1.46201 1.42853 1.00400 0.85943 0.78243 0.80689 0.78529 1.20570 1.23693 1.18095 1.20883 0.94834 0.95295 0.85810 1.22169 1.00096 0.99859 0.94609 1.22081 0.89498 0.97160 0.87704 0.91275 1.22230 0.95826 1.02486 1.01933 1.87998 1.63040 1.36680 1.43288 1.21442 0.95845 0.90811 0.89618 1.19801 0.94121 1.00796 0.95687 1.21293 0.93233 0.99343 0.99598 1.21446 1.00619 0.98138 0.94816 1.21535 0.96143 0.98970 0.97327 1.21467 0.93724 0.99396 1.00247 1.21297 1.00562 0.97203 0.94019 0.91464 0.92456 0.94705 0.94749 0.92949 0.92900 0.94019 0.92442 0.93458 0.92136 0.90964 0.92733 0.91240 0.91255 0.92165 0.85936 0.84323 0.83727 0.83786 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.83 10.23 71.98 0.74 -5.09 16 2 C 0.12 5.47 5.01 86.38 0.43 5.90 16 3 N -0.62 -29.81 2.08 -702.02 -1.46 -31.27 16 4 C -0.25 -14.50 9.91 84.03 0.83 -13.67 16 5 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 6 C -0.02 -1.04 5.26 84.86 0.45 -0.59 16 7 N -0.95 -60.13 13.97 21.65 0.30 -59.82 16 8 Si 0.94 47.16 25.05 68.60 1.72 48.88 16 9 H -0.28 -13.49 6.69 99.48 0.67 -12.82 16 10 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 11 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.16 6.30 5.59 86.38 0.48 6.79 16 13 C -0.13 -4.63 5.24 30.59 0.16 -4.47 16 14 C 0.09 2.63 2.72 30.60 0.08 2.71 16 15 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 16 C -0.17 -3.96 9.53 71.98 0.69 -3.27 16 17 O -0.39 -11.18 9.51 -148.98 -1.42 -12.60 16 18 C 0.10 2.23 5.87 71.24 0.42 2.65 16 19 C -0.10 -2.36 5.51 -19.86 -0.11 -2.47 16 20 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 21 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 22 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 27 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.03 1.66 3.60 -2.39 -0.01 1.65 16 29 H 0.05 2.11 8.12 -2.38 -0.02 2.09 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.06 2.17 7.73 -2.39 -0.02 2.15 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.07 1.38 7.87 -2.38 -0.02 1.37 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.30 7.82 -2.39 -0.02 1.28 16 39 H 0.06 1.29 8.03 -2.39 -0.02 1.27 16 40 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -68.04 358.54 5.31 -62.73 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.89 Total: 14.01 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 5.27 Total: -21.93 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -1.16 Total: -91.09 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.42 Total: -12.60 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.72 Total: 48.88 kcal Total: -68.04 5.31 -62.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354869059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.435 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds