Wall clock time and date at job start Mon Mar 30 2020 02:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47141 * 2 1 4 4 C 1.46896 * 111.00128 * 68.98154 * 3 2 1 5 5 C 1.50709 * 109.46894 * 71.37140 * 4 3 2 6 6 H 1.07996 * 119.99982 * 5.05323 * 5 4 3 7 7 C 1.37877 * 119.99411 * 185.05839 * 5 4 3 8 8 N 1.31512 * 120.00382 * 359.97438 * 7 5 4 9 9 Si 1.86811 * 119.99407 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46800 * 119.99905 * 9 7 5 12 12 H 1.48501 * 109.46631 * 239.99686 * 9 7 5 13 13 C 1.46896 * 111.00273 * 305.02506 * 3 2 1 14 14 C 1.52999 * 109.47317 * 287.25598 * 13 3 2 15 15 O 1.42899 * 109.47212 * 65.39768 * 14 13 3 16 16 C 1.35905 * 117.00101 * 180.02562 * 15 14 13 17 17 C 1.38756 * 120.05516 * 359.97438 * 16 15 14 18 18 C 1.38117 * 119.94076 * 180.02562 * 17 16 15 19 19 C 1.50706 * 119.96925 * 180.02562 * 18 17 16 20 20 C 1.38286 * 120.06079 * 0.02643 * 18 17 16 21 21 C 1.38246 * 120.10774 * 359.95419 * 20 18 17 22 22 C 1.38164 * 120.05995 * 359.76705 * 21 20 18 23 23 C 1.50695 * 120.03123 * 180.25419 * 22 21 20 24 24 H 1.08995 * 109.47694 * 185.26494 * 1 2 3 25 25 H 1.09000 * 109.46909 * 305.26621 * 1 2 3 26 26 H 1.09005 * 109.47153 * 65.25960 * 1 2 3 27 27 H 1.09003 * 109.46840 * 239.99861 * 2 1 3 28 28 H 1.09003 * 109.46689 * 120.00366 * 2 1 3 29 29 H 1.08998 * 109.47268 * 191.37029 * 4 3 2 30 30 H 1.08996 * 109.47355 * 311.37434 * 4 3 2 31 31 H 0.97007 * 119.99779 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47223 * 167.25338 * 13 3 2 33 33 H 1.09002 * 109.46997 * 47.25478 * 13 3 2 34 34 H 1.08999 * 109.46967 * 185.39617 * 14 13 3 35 35 H 1.09002 * 109.47215 * 305.39956 * 14 13 3 36 36 H 1.07998 * 120.02501 * 359.97438 * 17 16 15 37 37 H 1.09000 * 109.47101 * 89.99869 * 19 18 17 38 38 H 1.08997 * 109.47177 * 210.00486 * 19 18 17 39 39 H 1.09002 * 109.47025 * 330.00114 * 19 18 17 40 40 H 1.07998 * 119.94475 * 179.97438 * 20 18 17 41 41 H 1.08002 * 119.96892 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.46906 * 270.27848 * 23 22 21 43 43 H 1.08995 * 109.47330 * 30.27910 * 23 22 21 44 44 H 1.08998 * 109.47011 * 150.27979 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7314 2.0453 1.2801 5 6 2.6216 1.4720 2.3527 6 1 3.3859 0.7544 2.0935 7 6 2.4600 1.8638 3.6647 8 7 1.5296 2.7380 3.9801 9 14 3.5639 1.1538 4.9940 10 1 4.5230 0.1987 4.3832 11 1 4.3124 2.2530 5.6551 12 1 2.7334 0.4451 6.0006 13 6 1.4531 2.1437 -1.1230 14 6 2.1038 1.6838 -2.4292 15 8 1.7487 0.3235 -2.6851 16 6 2.2484 -0.2425 -3.8151 17 6 3.0635 0.4965 -4.6606 18 6 3.5697 -0.0809 -5.8087 19 6 4.4554 0.7210 -6.7271 20 6 3.2644 -1.3941 -6.1161 21 6 2.4529 -2.1326 -5.2751 22 6 1.9487 -1.5615 -4.1225 23 6 1.0688 -2.3689 -3.2033 24 1 -0.3634 -1.0232 0.0943 25 1 -0.3633 0.5934 0.8391 26 1 -0.3634 0.4301 -0.9334 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.9174 3.1152 1.1871 30 1 0.6878 1.8798 1.5474 31 1 1.4162 3.0139 4.9032 32 1 1.6442 3.2068 -0.9765 33 1 0.3779 1.9712 -1.1723 34 1 1.7546 2.3110 -3.2494 35 1 3.1873 1.7666 -2.3441 36 1 3.3012 1.5226 -4.4215 37 1 5.4959 0.5998 -6.4257 38 1 4.3303 0.3692 -7.7511 39 1 4.1807 1.7742 -6.6688 40 1 3.6608 -1.8436 -7.0145 41 1 2.2162 -3.1582 -5.5172 42 1 0.0273 -2.2535 -3.5033 43 1 1.3496 -3.4204 -3.2625 44 1 1.1931 -2.0166 -2.1793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357908627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:50 Heat of formation + Delta-G solvation = -20.835181 kcal Electronic energy + Delta-G solvation = -21900.478046 eV Core-core repulsion = 18817.789317 eV Total energy + Delta-G solvation = -3082.688728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23005 -38.02923 -36.55574 -33.79697 -32.61884 -30.61344 -29.71567 -29.23471 -28.78963 -25.96803 -24.79735 -23.60273 -22.76725 -21.57095 -20.84959 -19.15884 -17.47802 -16.22032 -16.17522 -15.86194 -15.52765 -14.91288 -14.50392 -14.21593 -13.91262 -13.67529 -13.62595 -13.30088 -12.92228 -12.77479 -12.73543 -12.48105 -11.92888 -11.76749 -11.65116 -11.52515 -11.34257 -11.22150 -11.11171 -10.90673 -10.74482 -10.65398 -10.56379 -10.32554 -9.97611 -9.53145 -9.16501 -8.68144 -8.40408 -7.92169 -7.14102 -5.99788 -4.00292 1.31703 1.50676 3.32560 3.40013 3.44344 3.45642 3.74354 4.44840 4.70583 4.78884 4.92240 5.01039 5.13303 5.25431 5.30825 5.35589 5.46024 5.53137 5.54419 5.62198 5.63843 5.70493 5.72342 5.79379 5.92640 5.98476 5.99937 6.14955 6.24928 6.29781 6.33230 6.37084 6.52255 6.59136 6.68008 6.75882 6.88483 7.08349 7.32103 7.48263 7.62947 7.86440 8.14255 8.26437 8.59409 9.08828 9.63851 11.10773 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025076 B = 0.003791 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.316477 B = 7383.775311 C = 7603.281238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 N -0.533 5.533 4 C 0.187 3.813 5 C -0.501 4.501 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.048 3.952 14 C 0.066 3.934 15 O -0.296 6.296 16 C 0.141 3.859 17 C -0.208 4.208 18 C -0.056 4.056 19 C -0.114 4.114 20 C -0.165 4.165 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.106 4.106 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.003 0.997 31 H 0.260 0.740 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -6.175 -19.901 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.071 4.071 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.081 4.081 14 C -0.009 4.009 15 O -0.209 6.209 16 C 0.095 3.905 17 C -0.227 4.227 18 C -0.056 4.056 19 C -0.171 4.171 20 C -0.183 4.183 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.073 -6.152 -19.634 20.603 hybrid contribution -0.217 -0.003 0.839 0.866 sum 0.856 -6.155 -18.795 19.796 Atomic orbital electron populations 1.22339 0.99717 1.00955 1.01188 1.22154 0.91848 0.91144 1.01939 1.62354 1.57334 1.01999 1.03957 1.19807 0.95782 0.93953 0.84293 1.21204 1.16860 1.24793 0.91117 0.91882 1.24985 0.95655 0.95379 0.98680 1.69969 1.33095 1.32523 1.18481 0.86477 0.80571 0.78932 0.81667 1.19653 1.21087 1.21163 1.22205 0.97399 0.98336 0.90171 1.23037 1.00735 0.79727 0.97404 1.86269 1.68837 1.28390 1.37373 1.18956 0.92903 0.92273 0.86406 1.21134 1.03488 1.01030 0.97045 1.19655 0.96809 0.94333 0.94824 1.20792 0.98765 0.99403 0.98093 1.20819 1.02174 0.94260 1.01039 1.20810 0.96636 0.99441 0.93166 1.19264 1.03257 0.92321 0.97839 1.20639 0.97965 0.98324 0.99355 0.93571 0.92354 0.93289 0.90785 0.90832 0.95957 0.97935 0.93080 0.89665 0.93913 0.92718 0.91341 0.85530 0.91107 0.91630 0.91643 0.86416 0.85823 0.91772 0.92078 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 9.15 37.16 0.34 -3.02 16 2 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 3 N -0.53 -11.41 4.61 -236.08 -1.09 -12.50 16 4 C 0.19 4.81 4.63 -4.97 -0.02 4.79 16 5 C -0.50 -14.13 8.38 -34.44 -0.29 -14.42 16 6 H 0.06 1.79 7.69 -52.49 -0.40 1.39 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.05 0.84 5.31 -3.83 -0.02 0.81 16 14 C 0.07 0.98 5.05 37.16 0.19 1.17 16 15 O -0.30 -4.60 6.22 -19.44 -0.12 -4.72 16 16 C 0.14 2.03 6.66 -39.21 -0.26 1.77 16 17 C -0.21 -2.70 8.69 -39.43 -0.34 -3.04 16 18 C -0.06 -0.64 5.88 -104.65 -0.62 -1.26 16 19 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 20 C -0.16 -1.80 9.70 -39.56 -0.38 -2.18 16 21 C -0.08 -0.94 9.70 -39.61 -0.38 -1.32 16 22 C -0.13 -1.67 5.89 -104.48 -0.62 -2.28 16 23 C -0.11 -1.28 9.79 36.00 0.35 -0.92 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.21 6.27 -51.93 -0.33 0.88 16 26 H 0.05 0.84 6.38 -51.93 -0.33 0.51 16 27 H 0.07 1.39 4.52 -51.93 -0.23 1.15 16 28 H 0.07 1.63 7.17 -51.93 -0.37 1.26 16 29 H 0.02 0.61 7.73 -51.93 -0.40 0.21 16 30 H 0.00 0.08 6.12 -51.93 -0.32 -0.24 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.09 1.44 7.72 -51.93 -0.40 1.04 16 33 H 0.04 0.75 5.66 -51.93 -0.29 0.45 16 34 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.13 1.51 6.30 -52.49 -0.33 1.17 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.08 1.04 6.46 -51.93 -0.34 0.71 16 LS Contribution 345.21 15.07 5.20 5.20 Total: -1.00 -30.37 345.21 -9.16 -39.52 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.05 Total: -0.28 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.81 Total: -17.97 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.35 Total: -38.56 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.12 Total: -4.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.37 -9.16 -39.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357908627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.686 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds