Wall clock time and date at job start Mon Mar 30 2020 01:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.46736 * 2 1 4 4 C 1.46897 * 110.99699 * 164.97683 * 3 2 1 5 5 C 1.50701 * 109.46881 * 293.94834 * 4 3 2 6 6 C 1.38638 * 119.75059 * 269.73149 * 5 4 3 7 7 C 1.37622 * 120.24741 * 179.72217 * 6 5 4 8 8 C 1.40718 * 119.74199 * 0.57154 * 7 6 5 9 9 C 1.41396 * 120.24311 * 179.68058 * 8 7 6 10 10 H 1.07997 * 120.00507 * 207.98629 * 9 8 7 11 11 C 1.39947 * 119.99697 * 27.98928 * 9 8 7 12 12 N 1.30826 * 120.00358 * 12.49888 * 11 9 8 13 13 Si 1.86804 * 119.99869 * 192.49675 * 11 9 8 14 14 H 1.48501 * 109.46980 * 90.00155 * 13 11 9 15 15 H 1.48500 * 109.47094 * 209.99913 * 13 11 9 16 16 H 1.48494 * 109.47278 * 330.00014 * 13 11 9 17 17 C 1.40714 * 119.51524 * 359.70181 * 8 7 6 18 18 C 1.37618 * 119.74233 * 0.02562 * 17 8 7 19 19 C 1.46902 * 110.99677 * 288.92346 * 3 2 1 20 20 C 1.53000 * 109.46721 * 163.84457 * 19 3 2 21 21 H 1.09005 * 109.47132 * 54.78297 * 20 19 3 22 22 C 1.53004 * 109.46893 * 174.77452 * 20 19 3 23 23 O 1.42895 * 109.47723 * 294.77612 * 20 19 3 24 24 C 1.42897 * 114.00212 * 153.26343 * 23 20 19 25 25 H 1.08998 * 109.47321 * 65.86650 * 1 2 3 26 26 H 1.09005 * 109.46790 * 185.86259 * 1 2 3 27 27 H 1.08999 * 109.47522 * 305.86271 * 1 2 3 28 28 H 1.08998 * 109.47467 * 240.00247 * 2 1 3 29 29 H 1.09003 * 109.47395 * 119.99598 * 2 1 3 30 30 H 1.08994 * 109.48064 * 53.95139 * 4 3 2 31 31 H 1.09005 * 109.46789 * 173.95319 * 4 3 2 32 32 H 1.07999 * 119.87527 * 359.97438 * 6 5 4 33 33 H 1.08001 * 120.12793 * 180.27556 * 7 6 5 34 34 H 0.96997 * 119.99983 * 180.02562 * 12 11 9 35 35 H 1.07993 * 120.12927 * 179.97438 * 17 8 7 36 36 H 1.08000 * 119.87407 * 179.97438 * 18 17 8 37 37 H 1.08990 * 109.47661 * 283.84732 * 19 3 2 38 38 H 1.09000 * 109.46963 * 43.85347 * 19 3 2 39 39 H 1.09001 * 109.47512 * 300.00010 * 22 20 19 40 40 H 1.08995 * 109.47296 * 60.00441 * 22 20 19 41 41 H 1.08999 * 109.47106 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.47570 * 304.92782 * 24 23 20 43 43 H 1.08997 * 109.47056 * 64.93107 * 24 23 20 44 44 H 1.08998 * 109.46990 * 184.92742 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4438 1.4399 0.3555 5 6 3.6222 0.9967 1.7847 6 6 3.5731 1.9325 2.8065 7 6 3.7290 1.5382 4.1158 8 6 3.9509 0.1811 4.4144 9 6 4.1192 -0.2347 5.7554 10 1 4.7099 -1.1107 5.9790 11 6 3.5204 0.4890 6.7927 12 7 2.6146 1.3932 6.5216 13 14 4.0144 0.1639 8.5647 14 1 5.1468 1.0508 8.9336 15 1 2.8603 0.4371 9.4584 16 1 4.4286 -1.2546 8.7108 17 6 4.0045 -0.7591 3.3689 18 6 3.8403 -0.3429 2.0674 19 6 1.7756 2.0296 -1.2974 20 6 1.9159 3.5458 -1.1479 21 1 2.8903 3.7801 -0.7191 22 6 1.7910 4.2074 -2.5218 23 8 0.8863 4.0370 -0.2873 24 6 1.2288 5.2423 0.3997 25 1 -0.3634 0.4202 -0.9378 26 1 -0.3633 -1.0224 0.1050 27 1 -0.3634 0.6020 0.8328 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.0084 0.7797 -0.3028 31 1 3.8070 2.4616 0.2439 32 1 3.4079 2.9742 2.5744 33 1 3.6860 2.2682 4.9105 34 1 2.1999 1.8951 7.2406 35 1 4.1746 -1.8030 3.5868 36 1 3.8814 -1.0626 1.2633 37 1 2.5016 1.6676 -2.0252 38 1 0.7685 1.7899 -1.6385 39 1 2.5765 3.8329 -3.1782 40 1 0.8167 3.9733 -2.9506 41 1 1.8914 5.2876 -2.4154 42 1 2.1588 5.0958 0.9490 43 1 1.3566 6.0485 -0.3227 44 1 0.4321 5.5020 1.0968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361574002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:32 Heat of formation + Delta-G solvation = -32.434692 kcal Electronic energy + Delta-G solvation = -21982.284407 eV Core-core repulsion = 18899.092686 eV Total energy + Delta-G solvation = -3083.191721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.83834 -37.66034 -36.33655 -33.65252 -32.07324 -31.03296 -29.36387 -29.23653 -27.02465 -26.33821 -24.87858 -23.41027 -21.47390 -20.89635 -20.51235 -19.50874 -17.23590 -16.65501 -15.73863 -15.31834 -15.27720 -14.88078 -14.25542 -14.14054 -13.83071 -13.53386 -13.38594 -13.08633 -12.64505 -12.53756 -12.29568 -11.97276 -11.94517 -11.81357 -11.47503 -11.34161 -11.30732 -11.17770 -11.03776 -10.90553 -10.51659 -10.37849 -10.30234 -10.17418 -9.54606 -9.37287 -9.29115 -9.13129 -7.80678 -7.38570 -7.18885 -6.66156 -4.31484 2.78665 3.09679 3.11231 3.13633 3.20542 3.96479 3.97820 4.28884 4.72753 4.99270 5.20510 5.23697 5.40642 5.44528 5.54751 5.58440 5.62922 5.64923 5.69396 5.77745 5.86990 5.90366 5.91596 5.96957 6.06623 6.09212 6.23394 6.26446 6.39695 6.46478 6.52759 6.64376 6.99681 7.13396 7.33785 7.39807 7.41501 7.56570 7.62164 7.67383 7.92411 8.11018 8.18721 8.35742 8.70440 8.95506 9.02860 10.27963 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.004311 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.541648 B = 6493.647340 C = 7048.614196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.522 5.522 4 C 0.117 3.883 5 C -0.199 4.199 6 C -0.080 4.080 7 C -0.160 4.160 8 C 0.112 3.888 9 C -0.466 4.466 10 H 0.075 0.925 11 C 0.074 3.926 12 N -0.799 5.799 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.223 4.223 18 C -0.089 4.089 19 C 0.055 3.945 20 C 0.090 3.910 21 H 0.060 0.940 22 C -0.175 4.175 23 O -0.366 6.366 24 C 0.034 3.966 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.091 0.909 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.279 0.721 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.030 0.970 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 4.225 -12.311 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 N -0.246 5.246 4 C -0.009 4.009 5 C -0.201 4.201 6 C -0.099 4.099 7 C -0.180 4.180 8 C 0.109 3.891 9 C -0.496 4.496 10 H 0.093 0.907 11 C -0.142 4.142 12 N -0.425 5.425 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.187 1.187 17 C -0.243 4.243 18 C -0.108 4.108 19 C -0.073 4.073 20 C 0.032 3.968 21 H 0.078 0.922 22 C -0.233 4.233 23 O -0.285 6.285 24 C -0.063 4.063 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.296 4.546 -11.819 12.869 hybrid contribution 0.770 -0.334 0.206 0.864 sum -1.526 4.212 -11.613 12.447 Atomic orbital electron populations 1.21742 0.95519 1.00886 1.01853 1.22134 0.95608 0.89152 1.01048 1.62051 1.18001 1.16858 1.27680 1.20801 0.86607 0.99117 0.94415 1.18857 1.14757 0.93757 0.92688 1.20460 0.99655 0.96650 0.93120 1.21330 1.05744 0.96389 0.94505 1.17615 0.87772 0.91137 0.92556 1.19577 1.28438 1.10815 0.90768 0.90671 1.25873 0.93135 0.93761 1.01458 1.69813 1.18846 1.19019 1.34801 0.86314 0.78932 0.79870 0.81559 1.19414 1.20359 1.18747 1.20970 1.12905 0.97629 0.92760 1.20344 1.00909 0.94091 0.95435 1.22210 1.01472 0.92625 0.91017 1.22125 0.91483 0.93628 0.89598 0.92206 1.22297 1.02489 1.00897 0.97642 1.87969 1.39664 1.40865 1.59975 1.22707 1.01308 0.86539 0.95697 0.93667 0.93018 0.91517 0.96212 0.89097 0.96129 0.92001 0.89752 0.86486 0.91033 0.89196 0.89905 0.94292 0.90275 0.91927 0.91900 0.92524 0.93905 0.95095 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.85 37.16 0.37 -1.75 16 2 C 0.05 0.79 5.52 -3.82 -0.02 0.77 16 3 N -0.52 -8.87 4.37 -236.07 -1.03 -9.90 16 4 C 0.12 2.09 4.96 -4.98 -0.02 2.07 16 5 C -0.20 -4.31 4.96 -104.33 -0.52 -4.83 16 6 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 7 C -0.16 -4.20 8.67 -38.87 -0.34 -4.54 16 8 C 0.11 3.00 5.55 -106.82 -0.59 2.41 16 9 C -0.47 -12.52 9.06 -37.74 -0.34 -12.86 16 10 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 11 C 0.07 1.90 5.23 -17.34 -0.09 1.81 16 12 N -0.80 -21.07 10.88 55.55 0.60 -20.46 16 13 Si 0.91 18.99 29.58 -169.99 -5.03 13.96 16 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 17 C -0.22 -5.50 9.80 -38.87 -0.38 -5.88 16 18 C -0.09 -1.98 7.81 -39.66 -0.31 -2.29 16 19 C 0.06 0.77 4.48 -3.82 -0.02 0.75 16 20 C 0.09 1.20 2.77 -26.73 -0.07 1.12 16 21 H 0.06 0.82 6.07 -51.93 -0.32 0.50 16 22 C -0.18 -1.81 9.47 37.16 0.35 -1.46 16 23 O -0.37 -5.63 10.31 -35.23 -0.36 -5.99 16 24 C 0.03 0.44 10.85 101.05 1.10 1.54 16 25 H 0.04 0.60 6.71 -51.93 -0.35 0.26 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.02 0.29 8.06 -51.93 -0.42 -0.12 16 29 H 0.09 1.71 5.17 -51.93 -0.27 1.44 16 30 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.06 1.05 6.28 -51.93 -0.33 0.73 16 32 H 0.08 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.12 3.19 6.23 -52.49 -0.33 2.86 16 34 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.08 1.64 7.75 -52.49 -0.41 1.23 16 37 H 0.04 0.49 8.05 -51.93 -0.42 0.08 16 38 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.54 7.73 -51.93 -0.40 0.14 16 42 H 0.04 0.57 7.97 -51.93 -0.41 0.15 16 43 H 0.03 0.33 7.73 -51.93 -0.40 -0.07 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -28.11 350.22 -9.11 -37.22 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.30 Total: 5.31 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -1.28 Total: -25.42 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: -0.43 Total: -30.36 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.36 Total: -5.99 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.11 -9.11 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361574002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds