Wall clock time and date at job start Mon Mar 30 2020 02:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.90021 * 2 1 4 4 N 1.40088 * 108.20068 * 179.74332 * 3 2 1 5 5 H 0.97004 * 126.03142 * 180.23152 * 4 3 2 6 6 C 1.34940 * 107.93023 * 0.36844 * 4 3 2 7 7 C 1.35317 * 107.74438 * 359.63568 * 6 4 3 8 8 C 1.50703 * 126.04130 * 180.25149 * 7 6 4 9 9 C 1.53124 * 109.51995 * 59.84734 * 8 7 6 10 10 C 1.53047 * 109.27170 * 182.50437 * 9 8 7 11 11 N 1.46847 * 109.57558 * 59.08993 * 10 9 8 12 12 C 1.46898 * 110.99910 * 174.19388 * 11 10 9 13 13 C 1.52998 * 109.47156 * 314.20329 * 12 11 10 14 14 C 1.52998 * 109.47084 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46631 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00156 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99501 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00383 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47102 * 60.00442 * 19 17 15 21 21 H 1.48496 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47466 * 300.00579 * 19 17 15 23 23 C 1.46849 * 111.19360 * 298.28814 * 11 10 9 24 24 C 1.53032 * 109.52712 * 61.74287 * 23 11 10 25 25 H 1.09005 * 109.47101 * 270.04126 * 1 2 3 26 26 H 1.08994 * 109.47093 * 30.04116 * 1 2 3 27 27 H 1.09000 * 109.47465 * 150.04521 * 1 2 3 28 28 H 1.08002 * 126.13053 * 179.90865 * 6 4 3 29 29 H 1.08996 * 109.52446 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.50487 * 302.38607 * 9 8 7 31 31 H 1.09003 * 109.49919 * 62.50603 * 9 8 7 32 32 H 1.09003 * 109.41245 * 299.06961 * 10 9 8 33 33 H 1.08994 * 109.45242 * 179.12863 * 10 9 8 34 34 H 1.08998 * 109.47588 * 74.20779 * 12 11 10 35 35 H 1.09006 * 109.46774 * 194.21010 * 12 11 10 36 36 H 1.08998 * 109.47240 * 300.00663 * 13 12 11 37 37 H 1.09000 * 109.46972 * 60.00007 * 13 12 11 38 38 H 1.08997 * 109.47399 * 299.99720 * 14 13 12 39 39 H 1.08992 * 109.47114 * 60.00538 * 14 13 12 40 40 H 0.96999 * 120.00361 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46305 * 301.72253 * 23 11 10 42 42 H 1.09010 * 109.46174 * 181.76216 * 23 11 10 43 43 H 1.09001 * 109.50645 * 180.87924 * 24 23 11 44 44 H 1.09003 * 109.53507 * 60.78130 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6339 0.0060 5 1 4.3908 1.2078 0.0105 6 6 3.6142 -0.7154 0.0013 7 6 2.3271 -1.1331 0.0008 8 6 1.8598 -2.5658 0.0016 9 6 2.3896 -3.2762 1.2503 10 6 1.9644 -4.7459 1.2140 11 7 2.4969 -5.3824 0.0025 12 6 2.2246 -6.8259 0.0032 13 6 2.5662 -7.4087 1.3760 14 6 2.2833 -8.9123 1.3765 15 6 2.6192 -9.4861 2.7289 16 1 2.9970 -8.8428 3.5097 17 6 2.4440 -10.8324 2.9693 18 7 1.9844 -11.6159 2.0183 19 14 2.8610 -11.5439 4.6454 20 1 2.0306 -10.8831 5.6842 21 1 2.5863 -13.0033 4.6460 22 1 4.2981 -11.3111 4.9385 23 6 1.9636 -4.7469 -1.2092 24 6 2.3901 -3.2776 -1.2461 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3634 -0.8904 -0.5131 28 1 4.4891 -1.3487 0.0025 29 1 0.7702 -2.5936 0.0014 30 1 3.4776 -3.2133 1.2707 31 1 1.9802 -2.7998 2.1412 32 1 0.8762 -4.8082 1.2088 33 1 2.3532 -5.2581 2.0941 34 1 1.1699 -6.9970 -0.2119 35 1 2.8343 -7.3110 -0.7593 36 1 3.6210 -7.2377 1.5911 37 1 1.9567 -6.9237 2.1385 38 1 1.2286 -9.0837 1.1613 39 1 2.8931 -9.3970 0.6142 40 1 1.8608 -12.5630 2.1875 41 1 0.8754 -4.8092 -1.2032 42 1 2.3517 -5.2600 -2.0892 43 1 1.9811 -2.8022 -2.1377 44 1 3.4780 -3.2143 -1.2666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375349920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:26 Heat of formation + Delta-G solvation = 49.589143 kcal Electronic energy + Delta-G solvation = -21271.315765 eV Core-core repulsion = 18223.973615 eV Total energy + Delta-G solvation = -3047.342149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51656 -38.86602 -35.16514 -33.39318 -32.85384 -31.30755 -30.60830 -29.18277 -28.05313 -26.33033 -24.27249 -23.06288 -22.27064 -21.21727 -19.85928 -19.52168 -19.09411 -18.02759 -16.37078 -15.50204 -15.12382 -14.82291 -14.59327 -14.47564 -14.32525 -14.06299 -13.46767 -13.35751 -13.10581 -13.00590 -12.84239 -12.31330 -12.19265 -12.11489 -11.56189 -11.42211 -11.11736 -11.06890 -10.83261 -10.81380 -10.59472 -10.53001 -10.20606 -10.11716 -9.57677 -9.54897 -9.29881 -9.02093 -8.55638 -8.31581 -7.94952 -5.97189 -3.99312 1.70796 2.55201 2.69104 3.35080 3.39276 3.41873 4.22406 4.47805 4.48957 4.59801 4.83702 4.97088 5.02438 5.08819 5.33702 5.38484 5.39885 5.45936 5.52175 5.58308 5.63013 5.70071 5.72755 5.81860 5.85160 5.92769 5.99667 6.05059 6.13728 6.22308 6.24994 6.35255 6.46634 6.51851 6.75181 6.83243 7.08334 7.13741 7.48233 7.48403 7.49979 7.70817 7.86479 8.03317 8.46478 9.07774 9.64483 11.14248 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.002836 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.030362 B = 9869.025429 C =10115.478111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.079 3.921 3 N -0.301 5.301 4 N -0.481 5.481 5 H 0.438 0.562 6 C 0.063 3.937 7 C -0.220 4.220 8 C -0.011 4.011 9 C -0.104 4.104 10 C 0.048 3.952 11 N -0.538 5.538 12 C 0.056 3.944 13 C -0.112 4.112 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.054 3.946 24 C -0.104 4.104 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.175 0.825 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.029 0.971 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 23.073 -6.417 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 N -0.126 5.126 4 N -0.188 5.188 5 H 0.281 0.719 6 C -0.084 4.084 7 C -0.231 4.231 8 C -0.031 4.031 9 C -0.142 4.142 10 C -0.080 4.080 11 N -0.263 5.263 12 C -0.071 4.071 13 C -0.149 4.149 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.074 4.074 24 C -0.142 4.142 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.192 0.808 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.806 24.209 -6.463 25.070 hybrid contribution -0.121 -1.241 0.871 1.521 sum 0.685 22.968 -5.592 23.649 Atomic orbital electron populations 1.20196 0.86873 1.03257 1.03072 1.22285 0.96935 0.90346 0.99160 1.77247 0.86836 1.22647 1.25846 1.46159 1.07164 1.05551 1.59975 0.71866 1.22370 0.99575 0.85000 1.01410 1.19990 0.91727 0.95992 1.15413 1.19548 0.99724 0.88296 0.95509 1.21660 1.01419 0.94369 0.96794 1.22222 0.97120 0.94226 0.94428 1.62039 1.59045 1.03791 1.01450 1.22273 0.98610 0.85830 1.00393 1.21789 1.00659 0.99108 0.93393 1.19063 0.96787 0.88672 0.97010 1.21220 1.43237 0.93279 0.98009 0.92768 1.25025 0.95356 0.97282 0.96822 1.69953 1.46023 1.05053 1.32588 0.86668 0.78923 0.77893 0.84572 1.20269 1.21325 1.20238 1.22076 0.97023 0.94650 0.93685 1.21630 1.01450 0.94124 0.96947 0.90453 0.91020 0.90300 0.80766 0.90879 0.91393 0.91883 0.95270 0.89387 0.95440 0.91170 0.92612 0.93153 0.96838 0.96592 0.92988 0.95262 0.91026 0.92002 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.11 36.01 0.36 -0.25 16 2 C 0.08 0.85 7.22 -82.40 -0.59 0.26 16 3 N -0.30 -3.46 12.70 33.67 0.43 -3.03 16 4 N -0.48 -4.23 7.36 30.44 0.22 -4.01 16 5 H 0.44 2.42 8.96 -182.60 -1.64 0.79 16 6 C 0.06 0.56 11.21 -17.23 -0.19 0.37 16 7 C -0.22 -2.24 4.85 -105.05 -0.51 -2.75 16 8 C -0.01 -0.11 2.57 -91.64 -0.24 -0.35 16 9 C -0.10 -1.18 5.28 -26.64 -0.14 -1.32 16 10 C 0.05 0.66 4.85 -3.83 -0.02 0.64 16 11 N -0.54 -7.96 4.81 -234.66 -1.13 -9.08 16 12 C 0.06 0.98 5.27 -3.83 -0.02 0.96 16 13 C -0.11 -2.31 4.40 -26.73 -0.12 -2.43 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.05 0.67 5.42 -3.84 -0.02 0.65 16 24 C -0.10 -1.07 5.28 -26.65 -0.14 -1.21 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.56 7.23 -51.93 -0.38 0.19 16 28 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.75 6.91 -51.93 -0.36 0.39 16 30 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 1.34 5.81 -51.93 -0.30 1.03 16 34 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.02 6.21 -51.93 -0.32 0.70 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.86 8.12 -51.92 -0.42 0.44 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -32.31 347.76 -10.55 -42.86 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -8.85 Total: -3.70 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -2.18 Total: -18.60 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.26 Total: -42.57 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.31 -10.55 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375349920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.454 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds