Wall clock time and date at job start Mon Mar 30 2020 02:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.90021 * 2 1 4 4 N 1.40088 * 108.20068 * 179.74332 * 3 2 1 5 5 H 0.97004 * 126.03142 * 180.23152 * 4 3 2 6 6 C 1.34940 * 107.93023 * 0.36844 * 4 3 2 7 7 C 1.35317 * 107.74438 * 359.63568 * 6 4 3 8 8 C 1.50703 * 126.04130 * 180.25149 * 7 6 4 9 9 C 1.53124 * 109.51995 * 59.84734 * 8 7 6 10 10 C 1.53047 * 109.27170 * 182.50437 * 9 8 7 11 11 N 1.46847 * 109.57558 * 59.08993 * 10 9 8 12 12 C 1.46898 * 110.99910 * 174.19388 * 11 10 9 13 13 C 1.52998 * 109.47156 * 314.20329 * 12 11 10 14 14 C 1.52998 * 109.47084 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46631 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00156 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99501 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00383 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47102 * 60.00442 * 19 17 15 21 21 H 1.48496 * 109.47350 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47466 * 300.00579 * 19 17 15 23 23 C 1.46849 * 111.19360 * 298.28814 * 11 10 9 24 24 C 1.53032 * 109.52712 * 61.74287 * 23 11 10 25 25 H 1.09005 * 109.47101 * 270.04126 * 1 2 3 26 26 H 1.08994 * 109.47093 * 30.04116 * 1 2 3 27 27 H 1.09000 * 109.47465 * 150.04521 * 1 2 3 28 28 H 1.08002 * 126.13053 * 179.90865 * 6 4 3 29 29 H 1.08996 * 109.52446 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.50487 * 302.38607 * 9 8 7 31 31 H 1.09003 * 109.49919 * 62.50603 * 9 8 7 32 32 H 1.09003 * 109.41245 * 299.06961 * 10 9 8 33 33 H 1.08994 * 109.45242 * 179.12863 * 10 9 8 34 34 H 1.08998 * 109.47588 * 74.20779 * 12 11 10 35 35 H 1.09006 * 109.46774 * 194.21010 * 12 11 10 36 36 H 1.08998 * 109.47240 * 300.00663 * 13 12 11 37 37 H 1.09000 * 109.46972 * 60.00007 * 13 12 11 38 38 H 1.08997 * 109.47399 * 299.99720 * 14 13 12 39 39 H 1.08992 * 109.47114 * 60.00538 * 14 13 12 40 40 H 0.96999 * 120.00361 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.46305 * 301.72253 * 23 11 10 42 42 H 1.09010 * 109.46174 * 181.76216 * 23 11 10 43 43 H 1.09001 * 109.50645 * 180.87924 * 24 23 11 44 44 H 1.09003 * 109.53507 * 60.78130 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6339 0.0060 5 1 4.3908 1.2078 0.0105 6 6 3.6142 -0.7154 0.0013 7 6 2.3271 -1.1331 0.0008 8 6 1.8598 -2.5658 0.0016 9 6 2.3896 -3.2762 1.2503 10 6 1.9644 -4.7459 1.2140 11 7 2.4969 -5.3824 0.0025 12 6 2.2246 -6.8259 0.0032 13 6 2.5662 -7.4087 1.3760 14 6 2.2833 -8.9123 1.3765 15 6 2.6192 -9.4861 2.7289 16 1 2.9970 -8.8428 3.5097 17 6 2.4440 -10.8324 2.9693 18 7 1.9844 -11.6159 2.0183 19 14 2.8610 -11.5439 4.6454 20 1 2.0306 -10.8831 5.6842 21 1 2.5863 -13.0033 4.6460 22 1 4.2981 -11.3111 4.9385 23 6 1.9636 -4.7469 -1.2092 24 6 2.3901 -3.2776 -1.2461 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8896 -0.5144 27 1 -0.3634 -0.8904 -0.5131 28 1 4.4891 -1.3487 0.0025 29 1 0.7702 -2.5936 0.0014 30 1 3.4776 -3.2133 1.2707 31 1 1.9802 -2.7998 2.1412 32 1 0.8762 -4.8082 1.2088 33 1 2.3532 -5.2581 2.0941 34 1 1.1699 -6.9970 -0.2119 35 1 2.8343 -7.3110 -0.7593 36 1 3.6210 -7.2377 1.5911 37 1 1.9567 -6.9237 2.1385 38 1 1.2286 -9.0837 1.1613 39 1 2.8931 -9.3970 0.6142 40 1 1.8608 -12.5630 2.1875 41 1 0.8754 -4.8092 -1.2032 42 1 2.3517 -5.2600 -2.0892 43 1 1.9811 -2.8022 -2.1377 44 1 3.4780 -3.2143 -1.2666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375349920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:25 Heat of formation + Delta-G solvation = 29.439358 kcal Electronic energy + Delta-G solvation = -21272.189525 eV Core-core repulsion = 18223.973615 eV Total energy + Delta-G solvation = -3048.215910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23736 -39.95015 -36.54868 -35.06078 -33.74550 -32.86270 -31.65867 -30.25677 -28.75927 -27.96470 -25.61136 -24.15089 -23.70067 -22.23954 -21.25750 -20.44878 -19.96301 -18.74673 -18.47660 -16.83823 -16.37634 -16.17224 -15.81463 -15.66292 -15.25387 -15.03591 -14.57534 -14.42613 -14.34562 -13.98049 -13.64293 -13.60674 -13.55777 -13.15155 -12.94735 -12.91551 -12.63332 -12.45145 -12.31933 -12.04531 -11.96970 -11.60619 -11.45799 -11.39060 -11.20146 -11.14099 -10.86402 -10.52759 -10.27003 -9.29609 -9.15757 -8.18661 -6.29756 1.00864 1.40851 1.44058 1.51936 1.81246 2.08954 2.42099 3.05649 3.14361 3.76630 3.87430 4.02228 4.05621 4.16146 4.30137 4.30413 4.47431 4.48195 4.58740 4.62310 4.69813 4.73802 4.79334 4.85858 4.90935 4.98029 5.02778 5.08486 5.10287 5.12686 5.18022 5.20631 5.24563 5.33755 5.37212 5.53139 5.62732 5.76837 5.79593 5.87154 6.17841 6.29015 6.34295 6.50900 6.79334 6.87226 7.39410 8.93149 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.002836 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.030362 B = 9869.025429 C =10115.478111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.335 5.335 4 N -0.474 5.474 5 H 0.450 0.550 6 C 0.072 3.928 7 C -0.237 4.237 8 C -0.002 4.002 9 C -0.096 4.096 10 C 0.047 3.953 11 N -0.540 5.540 12 C 0.066 3.934 13 C -0.095 4.095 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.266 1.266 23 C 0.052 3.948 24 C -0.095 4.095 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.199 0.801 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.054 0.946 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.264 0.736 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 24.277 -5.836 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 N -0.160 5.160 4 N -0.183 5.183 5 H 0.296 0.704 6 C -0.076 4.076 7 C -0.248 4.248 8 C -0.022 4.022 9 C -0.133 4.133 10 C -0.081 4.081 11 N -0.264 5.264 12 C -0.061 4.061 13 C -0.133 4.133 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.078 0.922 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.191 1.191 23 C -0.076 4.076 24 C -0.133 4.133 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.216 0.784 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.484 25.454 -5.886 26.168 hybrid contribution -0.318 -1.603 0.655 1.760 sum 1.167 23.851 -5.231 24.446 Atomic orbital electron populations 1.20276 0.85696 1.03869 1.03627 1.22676 0.97990 0.90374 0.98743 1.77201 0.87995 1.23557 1.27255 1.46210 1.06996 1.05914 1.59194 0.70374 1.22761 1.00013 0.85135 0.99684 1.20003 0.92278 0.95619 1.16915 1.19420 0.99711 0.88338 0.94710 1.21584 1.01573 0.92448 0.97741 1.22237 0.96813 0.95738 0.93318 1.62039 1.59434 1.02101 1.02868 1.22017 0.98108 0.87907 0.98100 1.21533 1.00492 0.95560 0.95668 1.18967 0.94598 0.92133 0.95468 1.21675 1.43365 0.93980 0.99090 0.92206 1.25991 0.95006 0.97749 1.01143 1.70090 1.46957 1.05459 1.34960 0.85509 0.79163 0.77073 0.79365 1.19123 1.20836 1.19136 1.22177 0.97014 0.95895 0.92508 1.21572 1.01674 0.92448 0.97581 0.89881 0.90678 0.89421 0.78408 0.90818 0.91132 0.91363 0.95641 0.91036 0.96014 0.91464 0.92824 0.92712 0.99295 0.99040 0.92772 0.95281 0.90710 0.90764 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.11 71.24 0.72 -0.41 16 2 C 0.07 1.36 7.22 43.10 0.31 1.67 16 3 N -0.34 -7.24 12.70 -47.38 -0.60 -7.85 16 4 N -0.47 -7.42 7.36 -57.59 -0.42 -7.85 16 5 H 0.45 4.13 8.96 -213.32 -1.91 2.22 16 6 C 0.07 1.09 11.21 83.54 0.94 2.03 16 7 C -0.24 -4.31 4.85 -20.14 -0.10 -4.41 16 8 C 0.00 -0.04 2.57 -11.46 -0.03 -0.07 16 9 C -0.10 -1.98 5.28 30.65 0.16 -1.81 16 10 C 0.05 1.24 4.85 86.33 0.42 1.66 16 11 N -0.54 -15.37 4.81 -896.33 -4.31 -19.68 16 12 C 0.07 2.32 5.27 86.30 0.46 2.78 16 13 C -0.09 -3.96 4.40 30.59 0.13 -3.82 16 14 C 0.03 1.39 4.97 29.85 0.15 1.54 16 15 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 18 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 19 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.05 1.20 5.42 86.32 0.47 1.66 16 24 C -0.09 -1.74 5.28 30.65 0.16 -1.58 16 25 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 1.11 7.23 -2.39 -0.02 1.09 16 28 H 0.20 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.07 1.35 6.91 -2.39 -0.02 1.34 16 30 H 0.07 1.44 7.94 -2.39 -0.02 1.42 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 2.13 5.81 -2.39 -0.01 2.11 16 34 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.22 6.21 -2.39 -0.01 2.21 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 1.68 8.12 -2.38 -0.02 1.67 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 Total: -1.00 -69.17 347.76 0.52 -68.65 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -0.94 Total: 8.89 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.49 Total: -31.49 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -5.05 Total: -92.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.17 0.52 -68.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375349920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.091 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds