Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47370 * 239.99521 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.42899 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46785 * 179.97438 * 7 6 5 9 9 C 1.38236 * 120.00113 * 269.72136 * 8 7 6 10 10 C 1.38231 * 120.00269 * 179.76764 * 9 8 7 11 11 C 1.38238 * 119.99823 * 0.51001 * 10 9 8 12 12 C 1.38239 * 119.99835 * 359.74955 * 11 10 9 13 13 C 1.38231 * 120.00122 * 359.97438 * 12 11 10 14 14 N 1.46901 * 109.47028 * 119.99628 * 2 1 3 15 15 C 1.46903 * 110.99927 * 274.99919 * 14 2 1 16 16 C 1.53004 * 109.46970 * 180.02562 * 15 14 2 17 17 C 1.50705 * 109.46915 * 180.02562 * 16 15 14 18 18 H 1.07991 * 119.99696 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00375 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99757 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47298 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46973 * 120.00377 * 21 19 17 24 24 H 1.48500 * 109.47521 * 240.00573 * 21 19 17 25 25 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47083 * 300.00419 * 1 2 3 27 27 H 1.08994 * 109.46630 * 60.00427 * 1 2 3 28 28 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 29 29 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 30 30 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 31 31 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 32 32 H 1.08997 * 109.47171 * 299.99768 * 7 6 5 33 33 H 1.08997 * 109.47442 * 59.99964 * 7 6 5 34 34 H 1.08008 * 119.99692 * 0.02562 * 9 8 7 35 35 H 1.08003 * 120.00360 * 180.23514 * 10 9 8 36 36 H 1.07999 * 119.99957 * 179.72451 * 11 10 9 37 37 H 1.08000 * 119.99792 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.00020 * 179.97438 * 13 12 11 39 39 H 1.00900 * 111.00417 * 38.95769 * 14 2 1 40 40 H 1.08993 * 109.46831 * 299.99828 * 15 14 2 41 41 H 1.08998 * 109.46932 * 60.00216 * 15 14 2 42 42 H 1.09000 * 109.47390 * 300.00259 * 16 15 14 43 43 H 1.08998 * 109.47125 * 60.00324 * 16 15 14 44 44 H 0.96997 * 120.00324 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3135 6 8 4.0412 -1.2867 -2.4806 7 6 5.4610 -1.2449 -2.6369 8 6 5.8500 -1.9819 -3.8925 9 6 6.1329 -3.3341 -3.8407 10 6 6.4850 -4.0112 -4.9932 11 6 6.5645 -3.3340 -6.1958 12 6 6.2868 -1.9807 -6.2466 13 6 5.9292 -1.3048 -5.0951 14 7 2.0197 -0.6924 1.1995 15 6 2.0824 0.2228 2.3469 16 6 2.5962 -0.5327 3.5742 17 6 2.6600 0.4061 4.7515 18 1 2.3634 1.4380 4.6359 19 6 3.0961 -0.0529 5.9763 20 7 3.4569 -1.3098 6.1172 21 14 3.1759 1.1108 7.4353 22 1 2.7197 2.4607 7.0173 23 1 2.2966 0.6055 8.5202 24 1 4.5743 1.1913 7.9285 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.6055 -0.2619 -2.1370 29 1 1.7517 -1.7716 -1.2054 30 1 3.9995 -1.0729 -0.4258 31 1 3.8533 0.4368 -1.3574 32 1 5.7883 -0.2076 -2.7079 33 1 5.9353 -1.7175 -1.7769 34 1 6.0747 -3.8623 -2.9004 35 1 6.7023 -5.0684 -4.9535 36 1 6.8439 -3.8621 -7.0954 37 1 6.3494 -1.4516 -7.1860 38 1 5.7126 -0.2475 -5.1347 39 1 1.4496 -1.4979 1.4102 40 1 2.7588 1.0462 2.1181 41 1 1.0871 0.6165 2.5525 42 1 1.9202 -1.3565 3.8031 43 1 3.5917 -0.9260 3.3684 44 1 3.7640 -1.6326 6.9788 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390079053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = -44.575413 kcal Electronic energy + Delta-G solvation = -20313.618859 eV Core-core repulsion = 17229.900677 eV Total energy + Delta-G solvation = -3083.718182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52134 -38.00451 -36.82471 -33.60525 -32.36603 -31.48646 -31.09017 -29.12340 -27.82353 -25.99026 -24.09150 -22.80034 -22.76607 -21.50065 -20.70182 -20.16693 -17.08639 -16.44585 -16.32776 -16.10098 -15.61466 -15.15118 -14.88662 -14.45762 -14.32498 -14.11692 -13.64184 -13.59644 -13.01712 -12.75626 -12.72340 -12.46210 -12.35136 -12.03355 -11.61987 -11.32198 -11.14920 -11.07203 -10.98937 -10.95508 -10.91986 -10.60639 -10.48194 -10.02732 -9.48725 -9.36198 -9.12864 -9.10789 -9.01667 -8.36362 -7.78634 -6.00456 -4.02967 1.08554 1.21484 3.30383 3.37816 3.41703 3.42113 3.99621 4.42823 4.64463 4.68474 4.74363 4.81424 4.92794 5.11750 5.15456 5.25343 5.30177 5.35566 5.39078 5.39492 5.48418 5.55585 5.67361 5.75878 5.78568 5.85373 5.91952 6.03121 6.17651 6.24241 6.25509 6.29987 6.35869 6.40705 6.44028 6.48292 6.79022 6.98125 7.29298 7.49850 7.73601 7.82821 7.96838 8.08390 8.43369 9.04714 9.60918 11.10978 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.002590 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.288012 B =10808.087318 C =11614.889718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.100 4.100 5 C 0.066 3.934 6 O -0.388 6.388 7 C 0.102 3.898 8 C -0.085 4.085 9 C -0.098 4.098 10 C -0.124 4.124 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.101 4.101 14 N -0.687 5.687 15 C 0.066 3.934 16 C 0.025 3.975 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.337 0.663 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.024 0.976 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -1.611 -23.445 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 H 0.092 0.908 4 C -0.138 4.138 5 C -0.010 4.010 6 O -0.308 6.308 7 C 0.026 3.974 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.142 4.142 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.119 4.119 14 N -0.318 5.318 15 C -0.062 4.062 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.043 0.957 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.646 -1.730 -23.594 23.936 hybrid contribution -0.739 0.811 1.296 1.698 sum 2.907 -0.918 -22.298 22.505 Atomic orbital electron populations 1.22465 0.97384 1.02030 1.01933 1.21495 0.92376 0.97988 0.90996 0.90773 1.21466 0.93687 1.01707 0.96961 1.22518 0.95309 0.95576 0.87555 1.87890 1.20064 1.77274 1.45603 1.21257 0.82906 0.98656 0.94616 1.19704 0.99891 0.94265 0.94653 1.21142 0.98021 0.93675 0.98811 1.21163 1.00361 0.99972 0.92723 1.21182 0.99965 0.94670 0.97882 1.21135 1.00294 0.94736 0.98208 1.21084 0.98641 1.00098 0.92051 1.60725 1.56462 1.10244 1.04366 1.22173 0.98164 0.95230 0.90655 1.19072 0.96955 0.95295 0.89943 1.21218 1.43773 0.96432 0.94528 0.92742 1.25009 0.95427 0.95103 0.98890 1.69982 1.44525 1.14371 1.24366 0.86540 0.77670 0.81125 0.82674 1.19790 1.21039 1.20973 0.92505 0.92357 0.92584 0.91786 0.91284 0.91194 0.94049 0.92673 0.92223 0.85720 0.85942 0.86160 0.86053 0.85996 0.84471 0.92516 0.96596 0.96841 0.95728 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.16 37.16 0.34 -1.91 16 2 C 0.08 1.16 2.59 -67.71 -0.18 0.98 16 3 H 0.07 1.06 7.80 -51.93 -0.40 0.66 16 4 C -0.10 -1.30 5.26 -26.73 -0.14 -1.44 16 5 C 0.07 0.91 5.83 37.16 0.22 1.13 16 6 O -0.39 -5.42 10.33 -35.23 -0.36 -5.78 16 7 C 0.10 1.20 6.06 36.01 0.22 1.42 16 8 C -0.09 -0.96 5.51 -104.62 -0.58 -1.54 16 9 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 10 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 11 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 12 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 13 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 14 N -0.69 -11.88 5.70 -106.72 -0.61 -12.49 16 15 C 0.07 1.36 5.42 -3.82 -0.02 1.34 16 16 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 17 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 26 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.07 7.75 -51.93 -0.40 0.67 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.34 5.74 8.47 -39.29 -0.33 5.41 16 40 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 41 H 0.02 0.33 7.44 -51.93 -0.39 -0.06 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -30.86 365.81 -10.19 -41.04 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.79 Total: 1.64 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -2.66 Total: -20.36 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.13 Total: -38.72 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.36 Total: -5.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.86 -10.19 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390079053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.534 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds