Wall clock time and date at job start Mon Mar 30 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46787 * 2 1 4 4 C 1.50699 * 109.46828 * 119.99168 * 2 1 3 5 5 H 1.08001 * 119.99471 * 120.00418 * 4 2 1 6 6 C 1.37875 * 120.00125 * 300.00405 * 4 2 1 7 7 N 1.31519 * 119.99889 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00134 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47077 * 90.00095 * 8 6 4 10 10 H 1.48497 * 109.47157 * 210.00121 * 8 6 4 11 11 H 1.48502 * 109.47131 * 329.99817 * 8 6 4 12 12 N 1.46897 * 109.47760 * 239.99408 * 2 1 3 13 13 C 1.46900 * 110.99701 * 84.99816 * 12 2 1 14 14 C 1.53008 * 109.47026 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.46905 * 55.00013 * 14 13 12 16 16 C 1.53003 * 109.46771 * 295.00175 * 14 13 12 17 17 C 1.52991 * 109.47056 * 175.00193 * 14 13 12 18 18 O 1.42903 * 109.47131 * 184.99865 * 17 14 13 19 19 C 1.42899 * 114.00342 * 180.02562 * 18 17 14 20 20 C 1.50701 * 109.47103 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99808 * 89.99842 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.86117 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97588 * 20 19 18 26 26 H 1.09006 * 109.46868 * 60.00627 * 1 2 3 27 27 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47696 * 300.00442 * 1 2 3 29 29 H 0.96999 * 119.99945 * 179.97438 * 7 6 4 30 30 H 1.00900 * 110.99571 * 321.04788 * 12 2 1 31 31 H 1.08999 * 109.47502 * 60.00467 * 13 12 2 32 32 H 1.09002 * 109.47406 * 300.00057 * 13 12 2 33 33 H 1.08997 * 109.47130 * 59.99649 * 16 14 13 34 34 H 1.09003 * 109.47037 * 179.97438 * 16 14 13 35 35 H 1.08998 * 109.46894 * 299.99997 * 16 14 13 36 36 H 1.08999 * 109.47303 * 65.00072 * 17 14 13 37 37 H 1.08994 * 109.47466 * 304.99529 * 17 14 13 38 38 H 1.08993 * 109.47528 * 59.99500 * 19 18 17 39 39 H 1.09001 * 109.46686 * 299.99411 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99666 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99729 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 2.1370 -0.8592 3.5567 8 14 0.6257 1.2801 2.6540 9 1 -0.8022 0.8748 2.6991 10 1 0.9769 1.9958 3.9068 11 1 0.8490 2.1776 1.4921 12 7 2.0198 -0.6926 -1.1993 13 6 2.0826 0.2224 -2.3468 14 6 2.5954 -0.5334 -3.5744 15 1 1.9695 -1.4084 -3.7499 16 6 4.0389 -0.9792 -3.3325 17 6 2.5431 0.3846 -4.7971 18 8 2.9110 -0.3543 -5.9636 19 6 2.8951 0.4148 -7.1679 20 6 3.2964 -0.4598 -8.3278 21 6 2.3334 -1.1567 -9.0334 22 6 2.7015 -1.9585 -10.0977 23 6 4.0326 -2.0649 -10.4550 24 6 4.9954 -1.3672 -9.7498 25 6 4.6272 -0.5647 -8.6862 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 1.9029 -0.5276 4.4376 30 1 1.4497 -1.4980 -1.4098 31 1 2.7589 1.0461 -2.1182 32 1 1.0872 0.6161 -2.5526 33 1 4.0761 -1.6331 -2.4613 34 1 4.4041 -1.5180 -4.2068 35 1 4.6647 -0.1042 -3.1570 36 1 3.2367 1.2140 -4.6587 37 1 1.5317 0.7729 -4.9170 38 1 3.5961 1.2445 -7.0784 39 1 1.8911 0.8040 -7.3371 40 1 1.2941 -1.0782 -8.7506 41 1 1.9492 -2.5033 -10.6488 42 1 4.3201 -2.6916 -11.2862 43 1 6.0353 -1.4501 -10.0292 44 1 5.3796 -0.0202 -8.1349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390190443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:15 Heat of formation + Delta-G solvation = -26.825536 kcal Electronic energy + Delta-G solvation = -20661.032870 eV Core-core repulsion = 17578.084380 eV Total energy + Delta-G solvation = -3082.948490 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62870 -38.18403 -36.64465 -34.18259 -32.24158 -31.64738 -31.16751 -28.91346 -26.77044 -25.85435 -25.08750 -23.74086 -22.84938 -21.59557 -20.29762 -19.89003 -17.19884 -16.79701 -16.40835 -16.22261 -15.69740 -15.11941 -15.00661 -14.52805 -14.32945 -13.87845 -13.66314 -13.54021 -12.99527 -12.93195 -12.63515 -12.53806 -12.25011 -12.02352 -11.81317 -11.53655 -11.30692 -11.25515 -11.14930 -10.78546 -10.65607 -10.41823 -10.25732 -10.10363 -9.68197 -9.48527 -9.18262 -9.13601 -9.08913 -8.54723 -7.38573 -6.02302 -3.99332 1.00097 1.13954 3.26357 3.31250 3.36011 3.39101 3.87437 4.41953 4.54619 4.56788 4.73619 4.84403 4.97205 5.05172 5.06845 5.11871 5.26083 5.27979 5.31777 5.37734 5.38476 5.60135 5.69703 5.74257 5.77102 5.89728 6.11007 6.17209 6.20761 6.21256 6.22983 6.29541 6.33676 6.41054 6.52288 6.58348 6.71086 6.76342 6.79298 7.10754 7.14486 7.73585 7.94094 8.35423 8.72423 9.09558 9.60469 11.11329 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044630 B = 0.002540 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.229520 B =11020.106949 C =11217.581104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.033 0.967 4 C -0.496 4.496 5 H 0.082 0.918 6 C 0.065 3.935 7 N -0.902 5.902 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.668 5.668 13 C 0.064 3.936 14 C -0.085 4.085 15 H 0.074 0.926 16 C -0.132 4.132 17 C 0.067 3.933 18 O -0.377 6.377 19 C 0.101 3.899 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.098 4.098 26 H 0.025 0.975 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.331 0.669 31 H 0.067 0.933 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 2.204 -27.441 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.541 5.541 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.196 1.196 12 N -0.297 5.297 13 C -0.066 4.066 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.189 4.189 17 C -0.010 4.010 18 O -0.296 6.296 19 C 0.025 3.975 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.122 2.101 -27.057 27.221 hybrid contribution -1.776 1.242 0.036 2.168 sum 0.346 3.344 -27.021 27.229 Atomic orbital electron populations 1.22859 1.01598 1.00887 0.98786 1.19642 0.88474 0.95089 0.89437 0.94947 1.20992 1.31048 1.13703 0.87720 0.90010 1.24954 0.96049 0.96626 0.95918 1.69888 1.46009 1.40352 0.97805 0.86885 0.80558 0.83990 0.76805 1.20845 1.22470 1.19555 1.60560 1.57865 1.08708 1.02615 1.21903 0.98127 0.95976 0.90591 1.21101 0.99191 0.98244 0.91855 0.90794 1.21634 0.94232 1.01380 1.01701 1.22601 0.98516 0.94675 0.85191 1.87973 1.89943 1.37265 1.14468 1.21274 1.00150 0.92561 0.83531 1.19649 0.93765 0.99122 0.96192 1.21091 0.99417 0.95957 0.95277 1.21156 0.96350 0.99154 0.97596 1.21196 0.93238 0.99269 0.99809 1.21160 0.99576 0.97362 0.96121 1.21096 0.95398 0.98454 0.96705 0.95581 0.92707 0.93695 0.92734 0.85202 0.91466 0.96451 0.90918 0.93281 0.93487 0.93230 0.93631 0.92552 0.92660 0.85946 0.85952 0.86075 0.85921 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.64 37.16 0.32 -3.61 16 2 C 0.18 4.30 2.16 -68.87 -0.15 4.15 16 3 H 0.03 0.80 6.86 -51.93 -0.36 0.44 16 4 C -0.50 -14.06 9.42 -34.44 -0.32 -14.39 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 7 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 8 Si 0.89 22.08 24.37 -169.99 -4.14 17.94 16 9 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.67 -13.44 5.69 -107.95 -0.61 -14.06 16 13 C 0.06 1.06 4.87 -3.82 -0.02 1.04 16 14 C -0.08 -1.21 2.77 -90.62 -0.25 -1.46 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -1.96 8.98 37.16 0.33 -1.63 16 17 C 0.07 0.82 5.32 37.15 0.20 1.02 16 18 O -0.38 -4.82 9.86 -35.23 -0.35 -5.16 16 19 C 0.10 1.02 6.06 36.01 0.22 1.23 16 20 C -0.09 -0.89 5.51 -104.63 -0.58 -1.46 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 26 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 27 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 28 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.33 6.32 8.47 -39.29 -0.33 5.99 16 31 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 32 H 0.02 0.28 7.44 -51.93 -0.39 -0.11 16 33 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 34 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.25 353.76 -8.84 -40.09 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.53 Total: 3.08 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.31 Total: -20.15 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.16 Total: -41.13 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.35 Total: -5.16 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.25 -8.84 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.265 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds