Wall clock time and date at job start Mon Mar 30 2020 01:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46787 * 2 1 4 4 C 1.50699 * 109.46828 * 119.99168 * 2 1 3 5 5 H 1.08001 * 119.99471 * 120.00418 * 4 2 1 6 6 C 1.37875 * 120.00125 * 300.00405 * 4 2 1 7 7 N 1.31519 * 119.99889 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00134 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47077 * 90.00095 * 8 6 4 10 10 H 1.48497 * 109.47157 * 210.00121 * 8 6 4 11 11 H 1.48502 * 109.47131 * 329.99817 * 8 6 4 12 12 N 1.46897 * 109.47760 * 239.99408 * 2 1 3 13 13 C 1.46900 * 110.99701 * 84.99816 * 12 2 1 14 14 C 1.53008 * 109.47026 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.46905 * 55.00013 * 14 13 12 16 16 C 1.53003 * 109.46771 * 295.00175 * 14 13 12 17 17 C 1.52991 * 109.47056 * 175.00193 * 14 13 12 18 18 O 1.42903 * 109.47131 * 184.99865 * 17 14 13 19 19 C 1.42899 * 114.00342 * 180.02562 * 18 17 14 20 20 C 1.50701 * 109.47103 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99808 * 89.99842 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00069 * 0.09581 * 22 21 20 24 24 C 1.38234 * 119.99866 * 359.86117 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97588 * 20 19 18 26 26 H 1.09006 * 109.46868 * 60.00627 * 1 2 3 27 27 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47696 * 300.00442 * 1 2 3 29 29 H 0.96999 * 119.99945 * 179.97438 * 7 6 4 30 30 H 1.00900 * 110.99571 * 321.04788 * 12 2 1 31 31 H 1.08999 * 109.47502 * 60.00467 * 13 12 2 32 32 H 1.09002 * 109.47406 * 300.00057 * 13 12 2 33 33 H 1.08997 * 109.47130 * 59.99649 * 16 14 13 34 34 H 1.09003 * 109.47037 * 179.97438 * 16 14 13 35 35 H 1.08998 * 109.46894 * 299.99997 * 16 14 13 36 36 H 1.08999 * 109.47303 * 65.00072 * 17 14 13 37 37 H 1.08994 * 109.47466 * 304.99529 * 17 14 13 38 38 H 1.08993 * 109.47528 * 59.99500 * 19 18 17 39 39 H 1.09001 * 109.46686 * 299.99411 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99666 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.99729 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 2.1370 -0.8592 3.5567 8 14 0.6257 1.2801 2.6540 9 1 -0.8022 0.8748 2.6991 10 1 0.9769 1.9958 3.9068 11 1 0.8490 2.1776 1.4921 12 7 2.0198 -0.6926 -1.1993 13 6 2.0826 0.2224 -2.3468 14 6 2.5954 -0.5334 -3.5744 15 1 1.9695 -1.4084 -3.7499 16 6 4.0389 -0.9792 -3.3325 17 6 2.5431 0.3846 -4.7971 18 8 2.9110 -0.3543 -5.9636 19 6 2.8951 0.4148 -7.1679 20 6 3.2964 -0.4598 -8.3278 21 6 2.3334 -1.1567 -9.0334 22 6 2.7015 -1.9585 -10.0977 23 6 4.0326 -2.0649 -10.4550 24 6 4.9954 -1.3672 -9.7498 25 6 4.6272 -0.5647 -8.6862 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8898 29 1 1.9029 -0.5276 4.4376 30 1 1.4497 -1.4980 -1.4098 31 1 2.7589 1.0461 -2.1182 32 1 1.0872 0.6161 -2.5526 33 1 4.0761 -1.6331 -2.4613 34 1 4.4041 -1.5180 -4.2068 35 1 4.6647 -0.1042 -3.1570 36 1 3.2367 1.2140 -4.6587 37 1 1.5317 0.7729 -4.9170 38 1 3.5961 1.2445 -7.0784 39 1 1.8911 0.8040 -7.3371 40 1 1.2941 -1.0782 -8.7506 41 1 1.9492 -2.5033 -10.6488 42 1 4.3201 -2.6916 -11.2862 43 1 6.0353 -1.4501 -10.0292 44 1 5.3796 -0.0202 -8.1349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390190443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:15 Heat of formation + Delta-G solvation = -46.394873 kcal Electronic energy + Delta-G solvation = -20661.881460 eV Core-core repulsion = 17578.084380 eV Total energy + Delta-G solvation = -3083.797080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30872 -39.19712 -38.05240 -35.66299 -33.96556 -32.67177 -31.78826 -30.53243 -27.73536 -27.16076 -26.73419 -25.06706 -23.47687 -22.27094 -22.06930 -21.17195 -18.75112 -17.83596 -17.49366 -17.06350 -16.95684 -16.35107 -16.11655 -15.84242 -15.49492 -15.12081 -14.91415 -14.58459 -14.28532 -14.07961 -13.99482 -13.69731 -13.52288 -13.27716 -13.05082 -12.90691 -12.86073 -12.51514 -12.03157 -11.97477 -11.92599 -11.79465 -11.70879 -11.55542 -11.42952 -11.13463 -10.73661 -10.54977 -9.82222 -9.75637 -8.97967 -8.25548 -6.27877 0.34344 0.49991 1.30306 1.36012 1.46339 2.33343 2.55457 3.07783 3.08501 3.61337 3.89617 3.92331 3.98319 4.09711 4.15668 4.25859 4.31705 4.34848 4.44438 4.46601 4.53867 4.56865 4.59065 4.64817 4.70977 4.73603 4.77619 4.88610 4.92827 5.08161 5.08885 5.15720 5.19303 5.37136 5.39927 5.53677 5.55317 5.61108 5.67449 5.68713 6.04589 6.09863 6.26570 6.71654 6.76778 6.80682 7.37110 8.92015 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044630 B = 0.002540 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.229520 B =11020.106949 C =11217.581104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.187 3.813 3 H 0.029 0.971 4 C -0.502 4.502 5 H 0.034 0.966 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.682 5.682 13 C 0.068 3.932 14 C -0.078 4.078 15 H 0.070 0.930 16 C -0.126 4.126 17 C 0.073 3.927 18 O -0.397 6.397 19 C 0.100 3.900 20 C -0.108 4.108 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.114 4.114 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.264 0.736 30 H 0.336 0.664 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 3.678 -29.816 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.052 0.948 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.228 1.228 11 H -0.173 1.173 12 N -0.312 5.312 13 C -0.061 4.061 14 C -0.097 4.097 15 H 0.089 0.911 16 C -0.184 4.184 17 C -0.004 4.004 18 O -0.317 6.317 19 C 0.024 3.976 20 C -0.108 4.108 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.150 4.150 25 C -0.133 4.133 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.848 3.574 -29.475 29.703 hybrid contribution -1.271 0.665 0.683 1.589 sum -0.423 4.239 -28.792 29.106 Atomic orbital electron populations 1.22719 0.99438 1.01421 0.99990 1.19407 0.90002 0.94105 0.88740 0.95341 1.21295 1.30097 1.12452 0.90257 0.94781 1.25857 0.97699 1.00203 0.95395 1.70058 1.48130 1.42667 0.98522 0.85773 0.78936 0.79878 0.77214 1.19346 1.22785 1.17251 1.60380 1.58118 1.09558 1.03163 1.21913 0.99085 0.95316 0.89835 1.20982 0.98200 0.98395 0.92122 0.91123 1.21552 0.95126 1.00971 1.00716 1.22484 0.99706 0.93995 0.84234 1.87933 1.90163 1.38329 1.15290 1.21408 1.01187 0.92587 0.82451 1.19818 0.94323 0.99947 0.96674 1.21311 0.99802 0.96314 0.95794 1.21471 0.97183 0.98926 0.97401 1.21548 0.93088 0.99138 1.00228 1.21467 1.00796 0.96961 0.95776 1.21308 0.95472 0.99073 0.97398 0.92026 0.92674 0.94610 0.92665 0.84658 0.91836 0.94707 0.93383 0.92853 0.93312 0.92345 0.92114 0.91567 0.91441 0.85244 0.84016 0.83811 0.84082 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.13 8.64 71.98 0.62 -6.50 16 2 C 0.19 8.60 2.16 44.17 0.10 8.70 16 3 H 0.03 1.34 6.86 -2.39 -0.02 1.33 16 4 C -0.50 -29.08 9.42 25.60 0.24 -28.84 16 5 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 6 C 0.00 0.28 5.45 84.65 0.46 0.74 16 7 N -0.95 -60.55 13.96 21.45 0.30 -60.26 16 8 Si 0.95 45.05 24.37 68.60 1.67 46.72 16 9 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.25 -10.77 6.53 99.48 0.65 -10.12 16 12 N -0.68 -26.94 5.69 -495.43 -2.82 -29.76 16 13 C 0.07 2.10 4.87 86.31 0.42 2.52 16 14 C -0.08 -2.10 2.77 -10.79 -0.03 -2.13 16 15 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.13 -3.69 8.98 71.98 0.65 -3.05 16 17 C 0.07 1.60 5.32 71.98 0.38 1.98 16 18 O -0.40 -9.46 9.86 -148.98 -1.47 -10.93 16 19 C 0.10 1.83 6.06 71.24 0.43 2.27 16 20 C -0.11 -2.07 5.51 -19.87 -0.11 -2.18 16 21 C -0.11 -2.01 9.70 22.27 0.22 -1.80 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 25 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 26 H 0.06 2.04 7.45 -2.38 -0.02 2.02 16 27 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 28 H 0.04 1.50 3.27 -2.39 -0.01 1.49 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.34 12.61 8.47 -89.69 -0.76 11.85 16 31 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 32 H 0.03 0.98 7.44 -2.39 -0.02 0.96 16 33 H 0.05 1.62 7.75 -2.39 -0.02 1.60 16 34 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 39 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 40 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -68.49 353.76 2.07 -66.43 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.12 Total: 22.96 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.27 Total: -35.16 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -2.52 Total: -90.01 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.47 Total: -10.93 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.67 Total: 46.72 kcal Total: -68.49 2.07 -66.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.032 kcal (2) G-P(sol) polarization free energy of solvation -68.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds