Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99984 * 12 2 1 14 14 C 1.52998 * 109.46854 * 180.02562 * 13 12 2 15 15 H 1.08993 * 109.47611 * 54.99176 * 14 13 12 16 16 C 1.53009 * 109.46826 * 294.99531 * 14 13 12 17 17 C 1.52998 * 109.47099 * 174.99974 * 14 13 12 18 18 O 1.42897 * 109.47263 * 184.99573 * 17 14 13 19 19 C 1.42904 * 114.00157 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.47031 * 180.02562 * 19 18 17 21 21 C 1.38230 * 119.99988 * 269.72451 * 20 19 18 22 22 C 1.38241 * 119.99876 * 179.76946 * 21 20 19 23 23 C 1.38236 * 119.99751 * 0.50578 * 22 21 20 24 24 C 1.38232 * 120.00188 * 359.75061 * 23 22 21 25 25 C 1.38236 * 119.99775 * 89.99976 * 20 19 18 26 26 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 28 28 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 29 29 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 30 30 H 1.00896 * 110.99789 * 151.04350 * 12 2 1 31 31 H 1.09005 * 109.46479 * 299.99747 * 13 12 2 32 32 H 1.08996 * 109.47267 * 59.99984 * 13 12 2 33 33 H 1.08993 * 109.47039 * 60.00223 * 16 14 13 34 34 H 1.08997 * 109.47171 * 180.02562 * 16 14 13 35 35 H 1.09002 * 109.46823 * 300.00032 * 16 14 13 36 36 H 1.08999 * 109.46874 * 304.99611 * 17 14 13 37 37 H 1.09004 * 109.47597 * 64.99613 * 17 14 13 38 38 H 1.09006 * 109.46775 * 299.99932 * 19 18 17 39 39 H 1.08997 * 109.47074 * 60.00077 * 19 18 17 40 40 H 1.08002 * 120.00124 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.99995 * 180.22962 * 22 21 20 42 42 H 1.08004 * 119.99763 * 179.72771 * 23 22 21 43 43 H 1.07997 * 120.00409 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00327 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5962 -0.5330 3.5742 15 1 3.5519 -1.0013 3.3388 16 6 1.5844 -1.6102 3.9704 17 6 2.7801 0.4458 4.7356 18 8 3.3688 -0.2363 5.8447 19 6 3.5851 0.5926 6.9886 20 6 4.2067 -0.2252 8.0912 21 6 3.4015 -0.8743 9.0083 22 6 3.9717 -1.6283 10.0170 23 6 5.3472 -1.7247 10.1146 24 6 6.1525 -1.0713 9.2006 25 6 5.5822 -0.3216 8.1888 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7088 1.1614 -3.4843 30 1 2.9173 -1.1206 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6162 2.5526 33 1 1.4533 -2.3075 3.1430 34 1 1.9501 -2.1482 4.8449 35 1 0.6286 -1.1419 4.2057 36 1 3.4318 1.2617 4.4233 37 1 1.8103 0.8475 5.0293 38 1 4.2538 1.4114 6.7227 39 1 2.6322 0.9976 7.3291 40 1 2.3269 -0.7950 8.9350 41 1 3.3426 -2.1385 10.7313 42 1 5.7928 -2.3103 10.9052 43 1 7.2271 -1.1463 9.2770 44 1 6.2114 0.1895 7.4752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390190445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -36.995742 kcal Electronic energy + Delta-G solvation = -20598.507948 eV Core-core repulsion = 17515.118446 eV Total energy + Delta-G solvation = -3083.389503 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.59319 -38.09681 -36.35374 -34.03910 -32.22398 -31.43948 -31.13998 -28.20457 -26.72774 -25.77926 -25.20582 -23.57505 -22.82092 -21.56045 -19.93201 -19.72331 -17.16461 -16.63710 -16.28258 -16.15487 -15.63697 -15.12768 -14.82100 -14.37742 -14.23307 -13.72045 -13.63135 -13.40525 -13.01521 -12.91325 -12.41972 -12.34239 -11.96441 -11.79428 -11.32368 -11.28716 -11.17429 -10.95546 -10.90074 -10.74975 -10.57637 -10.28533 -10.17266 -10.09617 -9.82405 -9.61366 -9.15534 -9.06718 -8.81147 -8.45667 -7.22654 -6.01301 -4.07643 1.03116 1.16661 3.32152 3.35263 3.36368 3.39534 3.92860 4.41494 4.57881 4.61918 4.76612 4.87510 5.02209 5.13129 5.15210 5.19869 5.29620 5.33340 5.40978 5.41935 5.53430 5.71292 5.72651 5.79884 5.89456 6.00790 6.20000 6.22316 6.25481 6.36338 6.37363 6.45859 6.66022 6.73890 6.79362 6.90645 7.16003 7.17918 7.26375 7.52975 7.79628 7.91994 8.29431 8.41674 8.69929 9.03213 9.58196 11.05029 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.002470 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.609224 B =11333.217490 C =11578.025006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.685 5.685 13 C 0.068 3.932 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.130 4.130 17 C 0.067 3.933 18 O -0.378 6.378 19 C 0.101 3.899 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.099 4.099 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -0.745 23.744 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.062 4.062 14 C -0.104 4.104 15 H 0.091 0.909 16 C -0.188 4.188 17 C -0.010 4.010 18 O -0.297 6.297 19 C 0.024 3.976 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.825 -1.053 23.744 24.471 hybrid contribution 0.994 0.456 -1.095 1.548 sum 6.819 -0.597 22.649 23.660 Atomic orbital electron populations 1.21709 0.97913 0.99324 0.99257 1.19095 0.92610 0.92263 0.85616 0.98291 1.21236 1.31449 1.12488 0.90478 0.92263 1.24927 0.95072 0.95018 0.99053 1.69888 1.36626 1.22910 1.23533 0.86576 0.79054 0.79793 0.82054 1.20179 1.21332 1.20354 1.60680 1.32053 1.33022 1.05848 1.21841 0.99573 0.93841 0.90977 1.21124 1.00278 0.96229 0.92805 0.90853 1.21617 0.97519 0.98541 1.01076 1.22615 0.96609 0.95145 0.86612 1.87968 1.82690 1.36678 1.22375 1.21275 0.98956 0.92070 0.85254 1.19659 0.93693 0.99393 0.95906 1.21094 0.99866 0.96234 0.94504 1.21154 0.95133 0.99322 0.98635 1.21192 0.93898 0.99373 0.99107 1.21154 0.99918 0.97814 0.95358 1.21099 0.94295 0.98527 0.97803 0.94966 0.97778 0.90176 0.92900 0.85290 0.96451 0.91770 0.91191 0.93373 0.93631 0.93524 0.93303 0.92621 0.92584 0.85901 0.85956 0.86102 0.85957 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 3 H 0.00 -0.01 7.80 -51.93 -0.41 -0.42 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.68 -14.70 5.76 -107.95 -0.62 -15.33 16 13 C 0.07 1.23 4.87 -3.82 -0.02 1.21 16 14 C -0.09 -1.30 2.77 -90.62 -0.25 -1.55 16 15 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 16 C -0.13 -1.98 8.98 37.16 0.33 -1.64 16 17 C 0.07 0.88 5.32 37.16 0.20 1.08 16 18 O -0.38 -5.06 9.86 -35.23 -0.35 -5.41 16 19 C 0.10 1.07 6.06 36.01 0.22 1.29 16 20 C -0.09 -0.91 5.51 -104.63 -0.58 -1.49 16 21 C -0.10 -0.96 9.70 -39.58 -0.38 -1.35 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 25 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 28 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.33 6.96 8.22 -39.29 -0.32 6.64 16 31 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 32 H 0.06 1.18 7.44 -51.93 -0.39 0.79 16 33 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 34 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 360.24 15.07 5.43 5.43 Total: -1.00 -29.69 360.24 -9.87 -39.55 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.65 Total: 3.07 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.29 Total: -18.69 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.01 Total: -40.34 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.35 Total: -5.41 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.69 -9.87 -39.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.555 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds