Wall clock time and date at job start Mon Mar 30 2020 01:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47056 * 2 1 4 4 C 1.50701 * 109.46958 * 239.99942 * 2 1 3 5 5 H 1.07998 * 120.00099 * 240.00531 * 4 2 1 6 6 C 1.37880 * 119.99755 * 60.00311 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47008 * 60.00170 * 8 6 4 10 10 H 1.48496 * 109.46873 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47134 * 299.99873 * 8 6 4 12 12 N 1.46906 * 109.47053 * 120.00330 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99984 * 12 2 1 14 14 C 1.52998 * 109.46854 * 180.02562 * 13 12 2 15 15 H 1.08993 * 109.47611 * 54.99176 * 14 13 12 16 16 C 1.53009 * 109.46826 * 294.99531 * 14 13 12 17 17 C 1.52998 * 109.47099 * 174.99974 * 14 13 12 18 18 O 1.42897 * 109.47263 * 184.99573 * 17 14 13 19 19 C 1.42904 * 114.00157 * 179.97438 * 18 17 14 20 20 C 1.50700 * 109.47031 * 180.02562 * 19 18 17 21 21 C 1.38230 * 119.99988 * 269.72451 * 20 19 18 22 22 C 1.38241 * 119.99876 * 179.76946 * 21 20 19 23 23 C 1.38236 * 119.99751 * 0.50578 * 22 21 20 24 24 C 1.38232 * 120.00188 * 359.75061 * 23 22 21 25 25 C 1.38236 * 119.99775 * 89.99976 * 20 19 18 26 26 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47006 * 299.99884 * 1 2 3 28 28 H 1.09002 * 109.47097 * 59.99865 * 1 2 3 29 29 H 0.97001 * 119.99839 * 179.97438 * 7 6 4 30 30 H 1.00896 * 110.99789 * 151.04350 * 12 2 1 31 31 H 1.09005 * 109.46479 * 299.99747 * 13 12 2 32 32 H 1.08996 * 109.47267 * 59.99984 * 13 12 2 33 33 H 1.08993 * 109.47039 * 60.00223 * 16 14 13 34 34 H 1.08997 * 109.47171 * 180.02562 * 16 14 13 35 35 H 1.09002 * 109.46823 * 300.00032 * 16 14 13 36 36 H 1.08999 * 109.46874 * 304.99611 * 17 14 13 37 37 H 1.09004 * 109.47597 * 64.99613 * 17 14 13 38 38 H 1.09006 * 109.46775 * 299.99932 * 19 18 17 39 39 H 1.08997 * 109.47074 * 60.00077 * 19 18 17 40 40 H 1.08002 * 120.00124 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.99995 * 180.22962 * 22 21 20 42 42 H 1.08004 * 119.99763 * 179.72771 * 23 22 21 43 43 H 1.07997 * 120.00409 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00327 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4191 -5.2204 11 1 3.8075 -1.1190 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5962 -0.5330 3.5742 15 1 3.5519 -1.0013 3.3388 16 6 1.5844 -1.6102 3.9704 17 6 2.7801 0.4458 4.7356 18 8 3.3688 -0.2363 5.8447 19 6 3.5851 0.5926 6.9886 20 6 4.2067 -0.2252 8.0912 21 6 3.4015 -0.8743 9.0083 22 6 3.9717 -1.6283 10.0170 23 6 5.3472 -1.7247 10.1146 24 6 6.1525 -1.0713 9.2006 25 6 5.5822 -0.3216 8.1888 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7088 1.1614 -3.4843 30 1 2.9173 -1.1206 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0871 0.6162 2.5526 33 1 1.4533 -2.3075 3.1430 34 1 1.9501 -2.1482 4.8449 35 1 0.6286 -1.1419 4.2057 36 1 3.4318 1.2617 4.4233 37 1 1.8103 0.8475 5.0293 38 1 4.2538 1.4114 6.7227 39 1 2.6322 0.9976 7.3291 40 1 2.3269 -0.7950 8.9350 41 1 3.3426 -2.1385 10.7313 42 1 5.7928 -2.3103 10.9052 43 1 7.2271 -1.1463 9.2770 44 1 6.2114 0.1895 7.4752 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390190445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:21 Heat of formation + Delta-G solvation = -53.190352 kcal Electronic energy + Delta-G solvation = -20599.210199 eV Core-core repulsion = 17515.118446 eV Total energy + Delta-G solvation = -3084.091754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31157 -39.15967 -37.88594 -35.67126 -33.72735 -32.58206 -31.78859 -30.02145 -27.73184 -27.39174 -26.70328 -25.04807 -23.47629 -22.26923 -21.72252 -21.19987 -18.50076 -17.81092 -17.49254 -17.10510 -16.86257 -16.33965 -16.12337 -15.62764 -15.51571 -15.21806 -14.80881 -14.37547 -14.25887 -14.01033 -13.65042 -13.53323 -13.32577 -13.05529 -12.91318 -12.77459 -12.68475 -12.51531 -12.19761 -12.11484 -11.94895 -11.90315 -11.76303 -11.57583 -11.49060 -10.88239 -10.56804 -10.56373 -9.82188 -9.75682 -9.02866 -8.13104 -6.27231 0.34227 0.50024 1.42722 1.44724 1.52318 2.41213 2.55646 3.08539 3.15495 3.69398 3.89160 3.92224 4.00237 4.10504 4.16012 4.25979 4.31441 4.34466 4.44402 4.52621 4.60054 4.64248 4.69643 4.76960 4.83709 4.87482 5.02506 5.07947 5.08619 5.15771 5.20043 5.22676 5.35429 5.49407 5.53155 5.55253 5.61029 5.67474 5.67576 5.87077 6.09764 6.22540 6.24454 6.47970 6.78446 7.00502 7.43100 8.92420 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038473 B = 0.002470 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.609224 B =11333.217490 C =11578.025006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.215 3.785 3 H -0.031 1.031 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.682 5.682 13 C 0.072 3.928 14 C -0.077 4.077 15 H 0.067 0.933 16 C -0.123 4.123 17 C 0.073 3.927 18 O -0.395 6.395 19 C 0.099 3.901 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.115 4.115 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.263 0.737 30 H 0.332 0.668 31 H 0.015 0.985 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -1.451 24.931 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.014 1.014 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.313 5.313 13 C -0.058 4.058 14 C -0.096 4.096 15 H 0.086 0.914 16 C -0.180 4.180 17 C -0.004 4.004 18 O -0.315 6.315 19 C 0.023 3.977 20 C -0.107 4.107 21 C -0.131 4.131 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.133 4.133 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.148 0.852 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.523 -1.761 24.955 25.854 hybrid contribution 0.800 0.680 -1.364 1.721 sum 7.322 -1.081 23.591 24.725 Atomic orbital electron populations 1.21536 0.97714 0.98833 0.99006 1.18913 0.92766 0.90723 0.86911 1.01374 1.21568 1.31746 1.12720 0.91645 0.92275 1.25749 0.95191 0.95709 1.02083 1.70016 1.37407 1.24057 1.24236 0.85532 0.78711 0.78640 0.78249 1.19666 1.20911 1.19592 1.60595 1.32191 1.33274 1.05237 1.21849 0.99615 0.93534 0.90825 1.20977 0.99767 0.96386 0.92476 0.91405 1.21532 0.97736 0.98152 1.00593 1.22468 0.97483 0.94391 0.86051 1.87926 1.82808 1.37726 1.23044 1.21419 0.99838 0.92068 0.84405 1.19800 0.94237 1.00336 0.96373 1.21308 1.00350 0.96592 0.94897 1.21473 0.95785 0.98990 0.98638 1.21553 0.93889 0.99072 0.99422 1.21463 1.01149 0.97344 0.95002 1.21304 0.94316 0.99159 0.98559 0.95379 0.95914 0.92495 0.92824 0.85118 0.96688 0.91950 0.92922 0.92662 0.93189 0.92787 0.92220 0.91719 0.91459 0.85247 0.83935 0.83722 0.84044 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 2 C 0.22 11.16 2.60 44.17 0.11 11.27 16 3 H -0.03 -1.78 7.80 -2.39 -0.02 -1.80 16 4 C -0.54 -29.95 8.59 25.60 0.22 -29.73 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.33 11.32 21.45 0.24 -53.09 16 8 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.68 -29.29 5.76 -495.44 -2.85 -32.14 16 13 C 0.07 2.55 4.87 86.30 0.42 2.97 16 14 C -0.08 -2.28 2.77 -10.79 -0.03 -2.31 16 15 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 16 C -0.12 -3.60 8.98 71.99 0.65 -2.96 16 17 C 0.07 1.81 5.32 71.98 0.38 2.19 16 18 O -0.40 -10.10 9.86 -148.98 -1.47 -11.57 16 19 C 0.10 1.97 6.06 71.24 0.43 2.41 16 20 C -0.11 -2.18 5.51 -19.87 -0.11 -2.28 16 21 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.12 -2.16 9.70 22.27 0.22 -1.95 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.02 1.01 7.45 -2.38 -0.02 1.00 16 28 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.33 14.01 8.22 -89.70 -0.74 13.27 16 31 H 0.01 0.55 8.06 -2.38 -0.02 0.53 16 32 H 0.06 2.24 7.44 -2.39 -0.02 2.23 16 33 H 0.05 1.71 7.75 -2.39 -0.02 1.70 16 34 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 35 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.15 8.09 -2.38 -0.02 1.13 16 39 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 40 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -62.67 360.24 2.45 -60.22 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.21 Total: 22.13 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.29 Total: -31.37 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.61 Total: -85.23 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.47 Total: -11.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.67 2.45 -60.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.033 kcal (2) G-P(sol) polarization free energy of solvation -62.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds