Wall clock time and date at job start Mon Mar 30 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47344 * 2 1 4 4 C 1.50706 * 109.47162 * 239.99653 * 2 1 3 5 5 H 1.07999 * 120.00428 * 240.00225 * 4 2 1 6 6 C 1.37878 * 119.99492 * 60.00034 * 4 2 1 7 7 N 1.31513 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47192 * 90.00316 * 8 6 4 10 10 H 1.48506 * 109.47059 * 210.00191 * 8 6 4 11 11 H 1.48497 * 109.47087 * 330.00237 * 8 6 4 12 12 N 1.46901 * 109.47063 * 120.00160 * 2 1 3 13 13 C 1.46899 * 111.00163 * 274.99813 * 12 2 1 14 14 C 1.53004 * 109.47344 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.46613 * 304.99971 * 14 13 12 16 16 C 1.53003 * 109.47053 * 64.99859 * 14 13 12 17 17 C 1.52991 * 109.46898 * 184.99975 * 14 13 12 18 18 O 1.42903 * 109.47131 * 174.99903 * 17 14 13 19 19 C 1.42899 * 114.00342 * 180.02562 * 18 17 14 20 20 C 1.50701 * 109.47103 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99808 * 89.99842 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.00070 * 0.07188 * 22 21 20 24 24 C 1.38234 * 119.99892 * 359.90902 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97588 * 20 19 18 26 26 H 1.09006 * 109.47857 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47223 * 299.99734 * 1 2 3 28 28 H 1.09004 * 109.47556 * 59.99564 * 1 2 3 29 29 H 0.97007 * 120.00114 * 179.97438 * 7 6 4 30 30 H 1.00909 * 110.99860 * 151.04191 * 12 2 1 31 31 H 1.09000 * 109.47093 * 59.99626 * 13 12 2 32 32 H 1.09005 * 109.46704 * 299.99795 * 13 12 2 33 33 H 1.08996 * 109.47226 * 59.99949 * 16 14 13 34 34 H 1.08999 * 109.47089 * 180.02562 * 16 14 13 35 35 H 1.08995 * 109.47041 * 299.99784 * 16 14 13 36 36 H 1.08999 * 109.47303 * 55.00110 * 17 14 13 37 37 H 1.08994 * 109.47466 * 294.99566 * 17 14 13 38 38 H 1.08993 * 109.47528 * 59.99500 * 19 18 17 39 39 H 1.09001 * 109.46686 * 299.99411 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99633 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.99751 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1123 11 1 3.6291 -1.7585 -3.7123 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5962 -0.5330 3.5742 15 1 1.9708 -1.4083 3.7500 16 6 4.0399 -0.9779 3.3318 17 6 2.5439 0.3851 4.7969 18 8 2.9128 -0.3536 5.9633 19 6 2.8958 0.4153 7.1677 20 6 3.2994 -0.4587 8.3273 21 6 4.6308 -0.5613 8.6848 22 6 5.0009 -1.3625 9.7488 23 6 4.0399 -2.0622 10.4542 24 6 2.7085 -1.9592 10.0968 25 6 2.3382 -1.1572 9.0336 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 0.7094 1.1618 -3.4844 30 1 2.9173 -1.1206 1.0287 31 1 1.0870 0.6163 2.5525 32 1 2.7589 1.0461 2.1182 33 1 4.6652 -0.1027 3.1559 34 1 4.4057 -1.5165 4.2059 35 1 4.0770 -1.6320 2.4607 36 1 1.5324 0.7728 4.9172 37 1 3.2370 1.2148 4.6582 38 1 1.8915 0.8033 7.3371 39 1 3.5960 1.2459 7.0784 40 1 5.3823 -0.0190 8.1302 41 1 6.0412 -1.4430 10.0278 42 1 4.3291 -2.6885 11.2851 43 1 1.9576 -2.5056 10.6483 44 1 1.2981 -1.0771 8.7542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390190446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:24 Heat of formation + Delta-G solvation = -36.760417 kcal Electronic energy + Delta-G solvation = -20601.152640 eV Core-core repulsion = 17517.773342 eV Total energy + Delta-G solvation = -3083.379298 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59470 -38.11926 -36.40616 -34.04546 -32.22439 -31.42396 -31.14002 -28.15089 -26.80776 -25.92814 -25.17427 -23.61024 -22.82080 -21.56031 -19.87416 -19.66323 -17.16919 -16.72930 -16.27559 -16.17604 -15.63603 -15.12606 -14.94602 -14.41888 -14.27196 -13.67064 -13.49228 -13.38747 -12.98350 -12.84507 -12.61434 -12.43849 -12.04627 -11.89105 -11.40284 -11.27951 -11.15925 -11.01572 -10.78345 -10.77001 -10.52703 -10.35484 -10.16316 -10.09697 -9.83454 -9.61697 -9.15555 -9.06940 -8.79814 -8.46067 -7.23553 -6.01504 -4.07781 1.03070 1.16654 3.30808 3.35241 3.37007 3.40286 3.92713 4.41428 4.57893 4.61957 4.76602 4.87545 5.01968 5.11023 5.15515 5.20901 5.29507 5.33701 5.38959 5.41287 5.50207 5.68415 5.72623 5.78385 5.80700 5.97526 6.19986 6.20340 6.25473 6.27035 6.36774 6.37233 6.61737 6.65241 6.73908 6.91219 7.15969 7.18226 7.26193 7.53178 7.79697 7.92096 8.29509 8.42004 8.70390 9.03245 9.58103 11.04861 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.002455 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.304469 B =11403.595779 C =11655.782104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.688 5.688 13 C 0.068 3.932 14 C -0.087 4.087 15 H 0.084 0.916 16 C -0.143 4.143 17 C 0.068 3.932 18 O -0.378 6.378 19 C 0.101 3.899 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.099 4.099 26 H 0.031 0.969 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.261 0.739 30 H 0.331 0.669 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -1.014 24.116 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.062 4.062 14 C -0.106 4.106 15 H 0.103 0.897 16 C -0.200 4.200 17 C -0.009 4.009 18 O -0.297 6.297 19 C 0.024 3.976 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.773 -1.324 24.114 24.617 hybrid contribution 0.937 0.429 -1.093 1.502 sum 5.709 -0.895 23.021 23.735 Atomic orbital electron populations 1.21716 0.97924 0.99337 0.99280 1.19103 0.92614 0.92309 0.85646 0.98238 1.21269 1.31389 1.12445 0.90471 0.92241 1.24930 0.95095 0.95007 0.99063 1.69901 1.36743 1.22875 1.23421 0.86516 0.79219 0.79318 0.82439 1.20608 1.21303 1.19940 1.60730 1.32274 1.33053 1.05942 1.21826 0.99399 0.93951 0.91040 1.21140 0.98038 0.99045 0.92346 0.89744 1.21762 0.95448 1.01060 1.01729 1.22595 0.98689 0.94532 0.85080 1.87966 1.89913 1.37368 1.14491 1.21273 1.00200 0.92526 0.83551 1.19660 0.93750 0.99055 0.96196 1.21092 0.95392 0.98510 0.96731 1.21152 0.99543 0.97407 0.96169 1.21190 0.93260 0.99297 0.99815 1.21156 0.96326 0.99167 0.97587 1.21101 0.99485 0.95867 0.95227 0.94961 0.97770 0.90141 0.92955 0.85051 0.91876 0.96297 0.93436 0.92491 0.92046 0.93289 0.93471 0.92559 0.92630 0.85929 0.85974 0.86105 0.85945 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.15 0.34 -2.81 16 2 C 0.21 5.43 2.60 -68.87 -0.18 5.26 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.37 8.59 -34.44 -0.30 -14.66 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.69 -14.97 6.30 -107.95 -0.68 -15.65 16 13 C 0.07 1.24 4.94 -3.82 -0.02 1.22 16 14 C -0.09 -1.32 2.83 -90.62 -0.26 -1.58 16 15 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.14 -2.08 8.86 37.16 0.33 -1.75 16 17 C 0.07 0.89 5.32 37.15 0.20 1.08 16 18 O -0.38 -5.04 9.86 -35.23 -0.35 -5.38 16 19 C 0.10 1.06 6.06 36.01 0.22 1.28 16 20 C -0.09 -0.91 5.51 -104.63 -0.58 -1.49 16 21 C -0.10 -0.96 9.70 -39.58 -0.38 -1.35 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.00 0.08 7.45 -51.92 -0.39 -0.31 16 28 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.33 7.04 6.48 -39.29 -0.25 6.78 16 31 H 0.06 1.16 7.44 -51.93 -0.39 0.77 16 32 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.80 7.82 -51.93 -0.41 0.39 16 35 H 0.06 0.93 6.68 -51.93 -0.35 0.59 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -29.91 357.99 -9.84 -39.75 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.52 Total: 3.35 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -2.30 Total: -18.85 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: -0.05 Total: -40.69 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.35 Total: -5.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.91 -9.84 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.990 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds