Wall clock time and date at job start Mon Mar 30 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47344 * 2 1 4 4 C 1.50706 * 109.47162 * 239.99653 * 2 1 3 5 5 H 1.07999 * 120.00428 * 240.00225 * 4 2 1 6 6 C 1.37878 * 119.99492 * 60.00034 * 4 2 1 7 7 N 1.31513 * 120.00179 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47192 * 90.00316 * 8 6 4 10 10 H 1.48506 * 109.47059 * 210.00191 * 8 6 4 11 11 H 1.48497 * 109.47087 * 330.00237 * 8 6 4 12 12 N 1.46901 * 109.47063 * 120.00160 * 2 1 3 13 13 C 1.46899 * 111.00163 * 274.99813 * 12 2 1 14 14 C 1.53004 * 109.47344 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.46613 * 304.99971 * 14 13 12 16 16 C 1.53003 * 109.47053 * 64.99859 * 14 13 12 17 17 C 1.52991 * 109.46898 * 184.99975 * 14 13 12 18 18 O 1.42903 * 109.47131 * 174.99903 * 17 14 13 19 19 C 1.42899 * 114.00342 * 180.02562 * 18 17 14 20 20 C 1.50701 * 109.47103 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99808 * 89.99842 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.00070 * 0.07188 * 22 21 20 24 24 C 1.38234 * 119.99892 * 359.90902 * 23 22 21 25 25 C 1.38230 * 119.99865 * 269.97588 * 20 19 18 26 26 H 1.09006 * 109.47857 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47223 * 299.99734 * 1 2 3 28 28 H 1.09004 * 109.47556 * 59.99564 * 1 2 3 29 29 H 0.97007 * 120.00114 * 179.97438 * 7 6 4 30 30 H 1.00909 * 110.99860 * 151.04191 * 12 2 1 31 31 H 1.09000 * 109.47093 * 59.99626 * 13 12 2 32 32 H 1.09005 * 109.46704 * 299.99795 * 13 12 2 33 33 H 1.08996 * 109.47226 * 59.99949 * 16 14 13 34 34 H 1.08999 * 109.47089 * 180.02562 * 16 14 13 35 35 H 1.08995 * 109.47041 * 299.99784 * 16 14 13 36 36 H 1.08999 * 109.47303 * 55.00110 * 17 14 13 37 37 H 1.08994 * 109.47466 * 294.99566 * 17 14 13 38 38 H 1.08993 * 109.47528 * 59.99500 * 19 18 17 39 39 H 1.09001 * 109.46686 * 299.99411 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.07997 * 119.99633 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.99751 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.00371 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1414 -5.1123 11 1 3.6291 -1.7585 -3.7123 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5962 -0.5330 3.5742 15 1 1.9708 -1.4083 3.7500 16 6 4.0399 -0.9779 3.3318 17 6 2.5439 0.3851 4.7969 18 8 2.9128 -0.3536 5.9633 19 6 2.8958 0.4153 7.1677 20 6 3.2994 -0.4587 8.3273 21 6 4.6308 -0.5613 8.6848 22 6 5.0009 -1.3625 9.7488 23 6 4.0399 -2.0622 10.4542 24 6 2.7085 -1.9592 10.0968 25 6 2.3382 -1.1572 9.0336 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 0.7094 1.1618 -3.4844 30 1 2.9173 -1.1206 1.0287 31 1 1.0870 0.6163 2.5525 32 1 2.7589 1.0461 2.1182 33 1 4.6652 -0.1027 3.1559 34 1 4.4057 -1.5165 4.2059 35 1 4.0770 -1.6320 2.4607 36 1 1.5324 0.7728 4.9172 37 1 3.2370 1.2148 4.6582 38 1 1.8915 0.8033 7.3371 39 1 3.5960 1.2459 7.0784 40 1 5.3823 -0.0190 8.1302 41 1 6.0412 -1.4430 10.0278 42 1 4.3291 -2.6885 11.2851 43 1 1.9576 -2.5056 10.6483 44 1 1.2981 -1.0771 8.7542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390190446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:23 Heat of formation + Delta-G solvation = -53.295798 kcal Electronic energy + Delta-G solvation = -20601.869668 eV Core-core repulsion = 17517.773342 eV Total energy + Delta-G solvation = -3084.096326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31195 -39.19019 -37.91660 -35.69257 -33.71064 -32.58423 -31.78678 -29.95844 -27.88229 -27.39224 -26.74839 -25.06344 -23.47426 -22.26480 -21.74669 -21.05615 -18.59230 -17.80880 -17.50235 -17.08303 -16.95261 -16.36242 -16.17410 -15.73710 -15.48817 -15.02121 -14.70876 -14.42701 -14.24830 -14.09945 -13.78412 -13.55295 -13.35454 -13.10941 -12.93228 -12.88616 -12.66754 -12.35502 -12.22841 -12.15637 -11.94732 -11.89529 -11.76970 -11.58973 -11.50054 -10.87160 -10.57460 -10.56484 -9.82023 -9.75584 -9.05212 -8.13624 -6.27807 0.34392 0.50201 1.42369 1.43474 1.53600 2.40969 2.55874 3.08693 3.14991 3.69855 3.90401 3.92740 3.99456 4.07712 4.15426 4.23605 4.30837 4.34328 4.43329 4.52612 4.56963 4.63731 4.69326 4.77241 4.82528 4.83232 4.99626 5.05894 5.08145 5.11372 5.15937 5.22182 5.32235 5.40748 5.50142 5.55317 5.61194 5.67445 5.67796 5.86164 6.09941 6.22216 6.24469 6.47803 6.78322 7.00330 7.42572 8.92118 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.042588 B = 0.002455 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.304469 B =11403.595779 C =11655.782104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.267 1.267 12 N -0.688 5.688 13 C 0.071 3.929 14 C -0.078 4.078 15 H 0.073 0.927 16 C -0.137 4.137 17 C 0.074 3.926 18 O -0.395 6.395 19 C 0.099 3.901 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.115 4.115 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.057 0.943 29 H 0.263 0.737 30 H 0.334 0.666 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -1.701 25.228 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.013 1.013 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.320 5.320 13 C -0.059 4.059 14 C -0.097 4.097 15 H 0.091 0.909 16 C -0.195 4.195 17 C -0.003 4.003 18 O -0.315 6.315 19 C 0.023 3.977 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.133 4.133 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.163 0.837 43 H 0.160 0.840 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.578 -2.013 25.251 25.937 hybrid contribution 0.693 0.645 -1.337 1.638 sum 6.271 -1.368 23.913 24.760 Atomic orbital electron populations 1.21551 0.97751 0.98840 0.99068 1.18926 0.92763 0.90808 0.86931 1.01252 1.21585 1.31721 1.12669 0.91635 0.92328 1.25755 0.95201 0.95700 1.02096 1.70025 1.37483 1.24007 1.24189 0.85470 0.78862 0.78183 0.78575 1.20135 1.20832 1.19177 1.60647 1.32511 1.33396 1.05407 1.21842 0.99488 0.93658 0.90883 1.20977 0.98002 0.98631 0.92077 0.90896 1.21705 0.95073 1.01144 1.01535 1.22451 0.99545 0.93965 0.84353 1.87925 1.90049 1.38323 1.15212 1.21417 1.01133 0.92671 0.82508 1.19802 0.94411 0.99918 0.96610 1.21304 0.95350 0.99092 0.97427 1.21470 1.00822 0.96896 0.95727 1.21551 0.93038 0.99125 1.00223 1.21465 0.97233 0.98912 0.97337 1.21307 0.99779 0.96346 0.95859 0.95407 0.95893 0.92400 0.92812 0.84782 0.92089 0.96440 0.92855 0.91828 0.93039 0.92529 0.92396 0.91639 0.91521 0.85287 0.83964 0.83731 0.84029 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 2 C 0.21 11.17 2.60 44.17 0.11 11.29 16 3 H -0.03 -1.72 7.80 -2.39 -0.02 -1.74 16 4 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.10 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.69 -29.92 6.30 -495.45 -3.12 -33.04 16 13 C 0.07 2.55 4.94 86.30 0.43 2.98 16 14 C -0.08 -2.31 2.83 -10.79 -0.03 -2.34 16 15 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 16 C -0.14 -3.86 8.86 71.98 0.64 -3.22 16 17 C 0.07 1.83 5.32 71.98 0.38 2.21 16 18 O -0.40 -10.07 9.86 -148.98 -1.47 -11.54 16 19 C 0.10 1.97 6.06 71.24 0.43 2.40 16 20 C -0.11 -2.17 5.51 -19.87 -0.11 -2.28 16 21 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 22 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 24 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 25 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.02 1.03 7.45 -2.38 -0.02 1.01 16 28 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 29 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 30 H 0.33 14.18 6.48 -89.69 -0.58 13.60 16 31 H 0.06 2.21 7.44 -2.39 -0.02 2.19 16 32 H 0.02 0.64 8.06 -2.38 -0.02 0.62 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 35 H 0.05 1.53 6.68 -2.39 -0.02 1.52 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 39 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 40 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -63.11 357.99 2.34 -60.77 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.37 Total: 22.87 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 4.29 Total: -31.80 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.88 Total: -86.15 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.47 Total: -11.54 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.11 2.34 -60.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390190446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.474 kcal (2) G-P(sol) polarization free energy of solvation -63.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds