Wall clock time and date at job start Mon Mar 30 2020 02:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.43165 * 114.00117 * 2 1 4 4 H 1.09563 * 110.63752 * 24.46707 * 3 2 1 5 5 C 1.59873 * 112.24986 * 258.90860 * 3 2 1 6 6 H 1.09348 * 117.52967 * 62.88390 * 5 3 2 7 7 C 1.57750 * 106.03477 * 195.97065 * 5 3 2 8 8 C 1.55351 * 109.01914 * 65.65303 * 7 5 3 9 9 H 1.09801 * 113.92062 * 127.01793 * 8 7 5 10 10 C 1.56174 * 109.25861 * 255.76879 * 8 7 5 11 11 N 1.52728 * 106.52965 * 96.24586 * 10 8 7 12 12 C 1.46843 * 110.41240 * 216.94715 * 11 10 8 13 13 C 1.53005 * 109.47032 * 283.50370 * 12 11 10 14 14 C 1.50701 * 115.55036 * 279.97715 * 13 12 11 15 15 H 1.08000 * 119.99900 * 0.18264 * 14 13 12 16 16 C 1.37875 * 120.00072 * 180.18005 * 14 13 12 17 17 N 1.31517 * 119.99814 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99998 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47429 * 59.99990 * 18 16 14 20 20 H 1.48498 * 109.47475 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47322 * 300.00160 * 18 16 14 22 22 C 1.52995 * 117.49545 * 134.27117 * 13 12 11 23 23 C 1.52996 * 60.00169 * 252.50848 * 22 13 12 24 24 C 1.43631 * 91.52281 * 329.32051 * 11 10 8 25 25 H 1.09547 * 79.64345 * 329.65783 * 24 11 10 26 26 C 1.58493 * 101.40395 * 3.52930 * 8 7 5 27 27 H 1.09444 * 120.87376 * 166.14459 * 26 8 7 28 28 C 1.56386 * 102.61847 * 30.11516 * 26 8 7 29 29 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46859 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46976 * 59.99823 * 1 2 3 32 32 H 1.08719 * 109.90550 * 304.79240 * 7 5 3 33 33 H 1.09150 * 109.20277 * 184.94870 * 7 5 3 34 34 H 1.08573 * 111.46359 * 335.55993 * 10 8 7 35 35 H 1.09381 * 109.76770 * 213.95137 * 10 8 7 36 36 H 1.09002 * 109.47561 * 43.50732 * 12 11 10 37 37 H 1.09003 * 109.47205 * 163.50501 * 12 11 10 38 38 H 0.96996 * 119.99834 * 180.02562 * 17 16 14 39 39 H 1.09003 * 117.50398 * 359.97438 * 22 13 12 40 40 H 1.09003 * 117.49832 * 145.01704 * 22 13 12 41 41 H 1.08998 * 117.50481 * 252.51760 * 23 22 13 42 42 H 1.09005 * 117.49622 * 107.48308 * 23 22 13 43 43 H 1.08938 * 111.96900 * 189.68684 * 28 26 8 44 44 H 1.09159 * 111.65555 * 64.47588 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0113 1.3079 0.0000 4 1 1.3158 2.0402 0.4247 5 6 2.5176 1.7451 -1.4521 6 1 1.7669 1.8410 -2.2414 7 6 3.4813 2.9734 -1.2260 8 6 4.7365 2.4951 -0.4456 9 1 5.6874 2.7578 -0.9277 10 6 4.6281 2.9623 1.0407 11 7 4.0547 1.7843 1.8257 12 6 3.1392 2.2618 2.8699 13 6 3.9490 2.8256 4.0392 14 6 4.5121 1.8033 4.9927 15 1 4.3347 0.7516 4.8232 16 6 5.2537 2.2108 6.0812 17 7 5.4693 3.4916 6.2878 18 14 5.9522 0.9437 7.2626 19 1 6.8652 0.0318 6.5275 20 1 6.7041 1.6339 8.3412 21 1 4.8421 0.1577 7.8587 22 6 3.5052 4.1682 4.6235 23 6 4.7799 4.0842 3.7814 24 6 3.3138 1.3327 0.6811 25 1 3.3292 2.4117 0.4925 26 6 4.4637 0.9376 -0.3374 27 1 5.2589 0.2475 -0.0386 28 6 3.6401 0.6442 -1.6340 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.9657 3.7504 -0.6671 33 1 3.7896 3.3708 -2.1946 34 1 3.9871 3.8332 1.1376 35 1 5.6239 3.1947 1.4290 36 1 2.4982 3.0432 2.4616 37 1 2.5238 1.4331 3.2202 38 1 5.9913 3.7782 7.0534 39 1 2.6366 4.6501 4.1745 40 1 3.6203 4.3123 5.6978 41 1 5.7336 4.1729 4.3016 42 1 4.7495 4.5105 2.7786 43 1 3.2230 -0.3622 -1.6329 44 1 4.2299 0.8228 -2.5350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394347268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:20 Heat of formation + Delta-G solvation = 171.553239 kcal Electronic energy + Delta-G solvation = -23229.642830 eV Core-core repulsion = 20155.296690 eV Total energy + Delta-G solvation = -3074.346140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.13616 -37.55399 -36.70191 -34.40273 -31.45118 -30.34982 -28.33514 -27.92527 -26.27643 -25.66621 -24.52595 -23.62506 -20.67021 -20.21797 -19.70485 -18.69844 -18.55793 -16.52672 -16.13512 -15.95693 -15.46313 -15.12841 -14.79049 -14.14791 -13.94337 -13.63855 -13.48532 -12.99480 -12.54416 -12.42942 -11.94805 -11.47240 -11.33266 -11.28545 -11.02931 -10.98924 -10.93328 -10.77226 -10.60724 -10.57707 -10.45315 -10.20714 -10.08470 -9.82381 -9.48960 -9.25524 -9.12437 -8.70681 -8.24645 -7.98139 -7.50784 -5.87677 -3.90891 3.37192 3.40840 3.44570 3.45595 3.75565 4.38230 4.42713 4.47959 4.61274 4.77724 4.89052 5.08071 5.12520 5.17390 5.25214 5.31152 5.35782 5.41256 5.50147 5.58737 5.66407 5.75744 5.86376 5.91846 5.99274 6.00982 6.07145 6.09131 6.16871 6.23565 6.29439 6.44285 6.53093 6.60199 6.68679 6.99520 7.13166 7.23481 7.31566 7.37763 7.74619 7.89227 8.10530 8.26878 8.59488 9.04682 9.63070 11.08766 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.005341 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.796757 B = 5241.560233 C = 5558.196130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.156 3.844 4 H 0.063 0.937 5 C -0.127 4.127 6 H 0.111 0.889 7 C -0.120 4.120 8 C -0.110 4.110 9 H 0.089 0.911 10 C 0.000 4.000 11 N -0.383 5.383 12 C 0.070 3.930 13 C 0.029 3.971 14 C -0.458 4.458 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.885 5.885 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.193 4.193 23 C -0.188 4.188 24 C -0.102 4.102 25 H 0.068 0.932 26 C -0.066 4.066 27 H 0.123 0.877 28 C -0.113 4.113 29 H 0.082 0.918 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.257 0.743 39 H 0.036 0.964 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -1.636 -16.156 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.289 6.289 3 C 0.097 3.903 4 H 0.081 0.919 5 C -0.146 4.146 6 H 0.129 0.871 7 C -0.157 4.157 8 C -0.129 4.129 9 H 0.107 0.893 10 C -0.128 4.128 11 N -0.104 5.104 12 C -0.058 4.058 13 C 0.029 3.971 14 C -0.496 4.496 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.524 5.524 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.231 4.231 23 C -0.226 4.226 24 C -0.210 4.210 25 H 0.086 0.914 26 C -0.085 4.085 27 H 0.141 0.859 28 C -0.150 4.150 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.030 0.970 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.752 -2.033 -15.657 16.803 hybrid contribution -0.513 0.703 0.480 0.994 sum -6.265 -1.330 -15.177 16.473 Atomic orbital electron populations 1.22772 0.82270 1.02465 0.99524 1.88163 1.18588 1.27721 1.94379 1.22437 0.90187 0.84875 0.92838 0.91908 1.25420 0.96832 0.96046 0.96346 0.87101 1.23132 0.95266 0.96929 1.00373 1.24561 0.97020 0.96790 0.94505 0.89258 1.25092 1.02476 0.93551 0.91685 1.68816 1.21878 1.18417 1.01279 1.22059 0.93483 0.97626 0.92595 1.18833 0.97707 0.87280 0.93321 1.20550 1.30345 0.92307 1.06366 0.92016 1.25001 0.96319 0.95364 0.97850 1.70008 1.39906 1.13619 1.28852 0.86577 0.79162 0.81418 0.80358 1.20200 1.21483 1.20372 1.22903 0.95066 1.03712 1.01451 1.22884 0.98083 1.05387 0.96252 1.23836 0.93439 1.06433 0.97297 0.91442 1.24572 0.96767 0.94086 0.93030 0.85875 1.23437 0.95686 0.98859 0.97044 0.89907 0.94201 0.94559 0.92285 0.91394 0.92547 0.89493 0.97001 0.90811 0.93251 0.94527 0.87072 0.87357 0.94023 0.90354 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.83 101.05 1.09 1.38 16 2 O -0.37 -5.45 9.72 -35.23 -0.34 -5.79 16 3 C 0.16 2.24 3.13 -25.74 -0.08 2.16 16 4 H 0.06 0.88 7.85 -51.61 -0.40 0.48 16 5 C -0.13 -1.47 5.56 -81.25 -0.45 -1.92 16 6 H 0.11 1.04 8.17 -51.73 -0.42 0.62 16 7 C -0.12 -1.41 5.34 -22.88 -0.12 -1.53 16 8 C -0.11 -1.51 4.51 -84.64 -0.38 -1.90 16 9 H 0.09 1.10 8.21 -51.47 -0.42 0.67 16 10 C 0.00 -0.01 3.93 1.22 0.00 0.00 16 11 N -0.38 -7.73 5.99 -278.24 -1.67 -9.40 16 12 C 0.07 1.54 4.75 -3.85 -0.02 1.52 16 13 C 0.03 0.74 2.26 -155.66 -0.35 0.39 16 14 C -0.46 -12.90 9.19 -34.44 -0.32 -13.21 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.05 1.53 5.27 -17.82 -0.09 1.44 16 17 N -0.88 -25.06 8.59 55.43 0.48 -24.58 16 18 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.19 -4.88 9.31 -26.74 -0.25 -5.13 16 23 C -0.19 -4.70 8.32 -26.73 -0.22 -4.92 16 24 C -0.10 -1.72 4.56 -69.22 -0.32 -2.04 16 25 H 0.07 1.08 0.98 -174.87 -0.17 0.91 16 26 C -0.07 -0.97 5.93 -82.66 -0.49 -1.46 16 27 H 0.12 1.88 8.18 -51.68 -0.42 1.45 16 28 C -0.11 -1.36 6.21 -22.01 -0.14 -1.50 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.72 7.05 -52.09 -0.37 0.36 16 33 H 0.07 0.67 8.15 -51.84 -0.42 0.25 16 34 H 0.06 0.99 5.72 -52.17 -0.30 0.69 16 35 H 0.09 1.64 7.45 -51.71 -0.39 1.26 16 36 H 0.01 0.24 7.35 -51.93 -0.38 -0.14 16 37 H 0.07 1.67 8.12 -51.93 -0.42 1.25 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.11 3.09 6.27 -51.93 -0.33 2.77 16 41 H 0.11 3.02 6.30 -51.93 -0.33 2.69 16 42 H 0.04 0.93 5.50 -51.93 -0.29 0.65 16 43 H 0.08 1.00 7.51 -51.96 -0.39 0.61 16 44 H 0.06 0.67 8.16 -51.84 -0.42 0.24 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -29.59 323.83 -10.91 -40.50 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.10 Total: 4.36 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -2.13 Total: -26.71 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: -1.19 Total: -33.98 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.34 Total: -5.79 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.59 -10.91 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394347268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.058 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds