Wall clock time and date at job start Mon Mar 30 2020 02:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.43165 * 114.00117 * 2 1 4 4 H 1.09563 * 110.63752 * 24.46707 * 3 2 1 5 5 C 1.59873 * 112.24986 * 258.90860 * 3 2 1 6 6 H 1.09348 * 117.52967 * 62.88390 * 5 3 2 7 7 C 1.57750 * 106.03477 * 195.97065 * 5 3 2 8 8 C 1.55351 * 109.01914 * 65.65303 * 7 5 3 9 9 H 1.09801 * 113.92062 * 127.01793 * 8 7 5 10 10 C 1.56174 * 109.25861 * 255.76879 * 8 7 5 11 11 N 1.52728 * 106.52965 * 96.24586 * 10 8 7 12 12 C 1.46843 * 110.41240 * 216.94715 * 11 10 8 13 13 C 1.53005 * 109.47032 * 283.50370 * 12 11 10 14 14 C 1.50701 * 115.55036 * 279.97715 * 13 12 11 15 15 H 1.08000 * 119.99900 * 0.18264 * 14 13 12 16 16 C 1.37875 * 120.00072 * 180.18005 * 14 13 12 17 17 N 1.31517 * 119.99814 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 119.99998 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47429 * 59.99990 * 18 16 14 20 20 H 1.48498 * 109.47475 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47322 * 300.00160 * 18 16 14 22 22 C 1.52995 * 117.49545 * 134.27117 * 13 12 11 23 23 C 1.52996 * 60.00169 * 252.50848 * 22 13 12 24 24 C 1.43631 * 91.52281 * 329.32051 * 11 10 8 25 25 H 1.09547 * 79.64345 * 329.65783 * 24 11 10 26 26 C 1.58493 * 101.40395 * 3.52930 * 8 7 5 27 27 H 1.09444 * 120.87376 * 166.14459 * 26 8 7 28 28 C 1.56386 * 102.61847 * 30.11516 * 26 8 7 29 29 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.46859 * 300.00427 * 1 2 3 31 31 H 1.09003 * 109.46976 * 59.99823 * 1 2 3 32 32 H 1.08719 * 109.90550 * 304.79240 * 7 5 3 33 33 H 1.09150 * 109.20277 * 184.94870 * 7 5 3 34 34 H 1.08573 * 111.46359 * 335.55993 * 10 8 7 35 35 H 1.09381 * 109.76770 * 213.95137 * 10 8 7 36 36 H 1.09002 * 109.47561 * 43.50732 * 12 11 10 37 37 H 1.09003 * 109.47205 * 163.50501 * 12 11 10 38 38 H 0.96996 * 119.99834 * 180.02562 * 17 16 14 39 39 H 1.09003 * 117.50398 * 359.97438 * 22 13 12 40 40 H 1.09003 * 117.49832 * 145.01704 * 22 13 12 41 41 H 1.08998 * 117.50481 * 252.51760 * 23 22 13 42 42 H 1.09005 * 117.49622 * 107.48308 * 23 22 13 43 43 H 1.08938 * 111.96900 * 189.68684 * 28 26 8 44 44 H 1.09159 * 111.65555 * 64.47588 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0113 1.3079 0.0000 4 1 1.3158 2.0402 0.4247 5 6 2.5176 1.7451 -1.4521 6 1 1.7669 1.8410 -2.2414 7 6 3.4813 2.9734 -1.2260 8 6 4.7365 2.4951 -0.4456 9 1 5.6874 2.7578 -0.9277 10 6 4.6281 2.9623 1.0407 11 7 4.0547 1.7843 1.8257 12 6 3.1392 2.2618 2.8699 13 6 3.9490 2.8256 4.0392 14 6 4.5121 1.8033 4.9927 15 1 4.3347 0.7516 4.8232 16 6 5.2537 2.2108 6.0812 17 7 5.4693 3.4916 6.2878 18 14 5.9522 0.9437 7.2626 19 1 6.8652 0.0318 6.5275 20 1 6.7041 1.6339 8.3412 21 1 4.8421 0.1577 7.8587 22 6 3.5052 4.1682 4.6235 23 6 4.7799 4.0842 3.7814 24 6 3.3138 1.3327 0.6811 25 1 3.3292 2.4117 0.4925 26 6 4.4637 0.9376 -0.3374 27 1 5.2589 0.2475 -0.0386 28 6 3.6401 0.6442 -1.6340 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.9657 3.7504 -0.6671 33 1 3.7896 3.3708 -2.1946 34 1 3.9871 3.8332 1.1376 35 1 5.6239 3.1947 1.4290 36 1 2.4982 3.0432 2.4616 37 1 2.5238 1.4331 3.2202 38 1 5.9913 3.7782 7.0534 39 1 2.6366 4.6501 4.1745 40 1 3.6203 4.3123 5.6978 41 1 5.7336 4.1729 4.3016 42 1 4.7495 4.5105 2.7786 43 1 3.2230 -0.3622 -1.6329 44 1 4.2299 0.8228 -2.5350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394347268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:19 Heat of formation + Delta-G solvation = 152.429728 kcal Electronic energy + Delta-G solvation = -23230.472088 eV Core-core repulsion = 20155.296690 eV Total energy + Delta-G solvation = -3075.175398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.31188 -39.02071 -38.14267 -35.83328 -33.53241 -31.54160 -29.45125 -29.16753 -27.77666 -27.09739 -25.93840 -25.01099 -22.65204 -21.38132 -20.99934 -20.42661 -19.69207 -18.09883 -17.57744 -17.25006 -16.88851 -16.56378 -16.19412 -15.47655 -15.42010 -14.91887 -14.88898 -14.41929 -14.17614 -13.63660 -13.24575 -12.98170 -12.88358 -12.65596 -12.49815 -12.39235 -12.31268 -12.21276 -12.06050 -12.01655 -11.91746 -11.62773 -11.50108 -11.45950 -11.09421 -10.94810 -10.49137 -10.28100 -10.20405 -9.96935 -8.88532 -8.01958 -6.12275 1.40071 1.41581 1.49547 2.21597 2.42386 2.78336 3.01762 3.34278 3.38885 3.54052 3.68071 3.70816 3.89704 4.03920 4.09962 4.17876 4.22854 4.27211 4.37138 4.40408 4.51817 4.57687 4.62106 4.67300 4.70251 4.75844 4.83100 4.87861 4.94315 5.00409 5.05374 5.10094 5.19634 5.21368 5.25526 5.33650 5.39012 5.43035 5.60195 5.69133 5.92692 6.15877 6.25933 6.44662 6.50162 6.87640 7.43863 8.91924 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.005341 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.796757 B = 5241.560233 C = 5558.196130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.149 3.851 4 H 0.060 0.940 5 C -0.107 4.107 6 H 0.145 0.855 7 C -0.117 4.117 8 C -0.100 4.100 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.421 5.421 12 C 0.087 3.913 13 C 0.018 3.982 14 C -0.486 4.486 15 H 0.047 0.953 16 C 0.012 3.988 17 N -0.901 5.901 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.273 1.273 22 C -0.194 4.194 23 C -0.177 4.177 24 C -0.130 4.130 25 H 0.079 0.921 26 C -0.074 4.074 27 H 0.107 0.893 28 C -0.102 4.102 29 H 0.095 0.905 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.055 0.945 38 H 0.257 0.743 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 -1.591 -18.848 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.313 6.313 3 C 0.090 3.910 4 H 0.078 0.922 5 C -0.126 4.126 6 H 0.162 0.838 7 C -0.154 4.154 8 C -0.118 4.118 9 H 0.127 0.873 10 C -0.126 4.126 11 N -0.142 5.142 12 C -0.042 4.042 13 C 0.017 3.983 14 C -0.523 4.523 15 H 0.066 0.934 16 C -0.187 4.187 17 N -0.540 5.540 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.199 1.199 22 C -0.232 4.232 23 C -0.215 4.215 24 C -0.238 4.238 25 H 0.096 0.904 26 C -0.093 4.093 27 H 0.125 0.875 28 C -0.140 4.140 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.453 -1.986 -18.354 19.556 hybrid contribution -0.301 0.659 1.362 1.543 sum -6.754 -1.327 -16.991 18.333 Atomic orbital electron populations 1.22959 0.80509 1.03656 1.00398 1.88112 1.20591 1.27983 1.94640 1.22658 0.89121 0.84828 0.94418 0.92218 1.25493 0.96939 0.95304 0.94876 0.83759 1.23111 0.94048 0.96839 1.01452 1.24536 0.99309 0.95839 0.92152 0.87325 1.25096 1.00674 0.92783 0.94031 1.68611 1.22894 1.19912 1.02781 1.21743 0.93145 0.96939 0.92350 1.18953 0.98136 0.86946 0.94220 1.20794 1.31447 0.92340 1.07764 0.93436 1.25690 0.96547 0.97196 0.99228 1.70150 1.39955 1.14831 1.29072 0.85638 0.78486 0.79211 0.78420 1.20162 1.20689 1.19854 1.22801 0.96105 1.04240 1.00061 1.22697 0.96406 1.05453 0.96977 1.24227 0.95884 1.08043 0.95612 0.90413 1.24619 0.96079 0.94729 0.93898 0.87462 1.23377 0.95555 0.98769 0.96258 0.88661 0.94823 0.92137 0.92651 0.88196 0.92733 0.91872 0.95912 0.92692 0.93315 0.92106 0.89819 0.90436 0.91489 0.91105 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.83 113.37 1.23 1.65 16 2 O -0.39 -11.07 9.72 -148.98 -1.45 -12.52 16 3 C 0.15 4.01 3.13 31.24 0.10 4.11 16 4 H 0.06 1.60 7.85 -2.09 -0.02 1.58 16 5 C -0.11 -2.04 5.56 -4.72 -0.03 -2.06 16 6 H 0.14 1.88 8.17 -2.20 -0.02 1.86 16 7 C -0.12 -2.28 5.34 33.09 0.18 -2.10 16 8 C -0.10 -2.52 4.51 -6.92 -0.03 -2.55 16 9 H 0.11 2.33 8.21 -1.96 -0.02 2.32 16 10 C 0.00 0.06 3.93 86.24 0.34 0.40 16 11 N -0.42 -17.30 5.99 ******* -6.20 -23.49 16 12 C 0.09 3.89 4.75 86.32 0.41 4.29 16 13 C 0.02 0.95 2.26 -52.93 -0.12 0.83 16 14 C -0.49 -28.32 9.19 25.60 0.24 -28.08 16 15 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 16 C 0.01 0.68 5.27 84.65 0.45 1.13 16 17 N -0.90 -52.36 8.59 21.45 0.18 -52.18 16 18 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.19 -9.97 9.31 30.59 0.28 -9.68 16 23 C -0.18 -9.04 8.32 30.59 0.25 -8.78 16 24 C -0.13 -4.31 4.56 45.67 0.21 -4.10 16 25 H 0.08 2.39 0.98 -151.28 -0.15 2.24 16 26 C -0.07 -2.09 5.93 -5.64 -0.03 -2.12 16 27 H 0.11 3.29 8.18 -2.15 -0.02 3.27 16 28 C -0.10 -2.13 6.21 33.66 0.21 -1.92 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.16 7.05 -2.53 -0.02 1.14 16 33 H 0.10 1.40 8.15 -2.31 -0.02 1.38 16 34 H 0.05 1.87 5.72 -2.61 -0.01 1.85 16 35 H 0.06 2.42 7.45 -2.18 -0.02 2.40 16 36 H 0.02 0.94 7.35 -2.39 -0.02 0.93 16 37 H 0.05 2.60 8.12 -2.39 -0.02 2.58 16 38 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.06 2.78 8.08 -2.39 -0.02 2.76 16 40 H 0.08 4.79 6.27 -2.39 -0.01 4.78 16 41 H 0.08 4.46 6.30 -2.39 -0.02 4.44 16 42 H 0.07 3.02 5.50 -2.38 -0.01 3.00 16 43 H 0.07 1.62 7.51 -2.42 -0.02 1.60 16 44 H 0.09 1.45 8.16 -2.30 -0.02 1.43 16 Total: -1.00 -66.20 323.83 -0.91 -67.10 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.85 Total: 22.45 kcal Atomic # 6 Polarization: -52.67 SS G_CDS: 3.68 Total: -49.00 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -6.01 Total: -75.67 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.45 Total: -12.52 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -66.20 -0.91 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394347268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.534 kcal (2) G-P(sol) polarization free energy of solvation -66.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds