Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.43020 * 113.99992 * 2 1 4 4 H 1.08815 * 108.96991 * 28.56502 * 3 2 1 5 5 C 1.56393 * 109.16589 * 148.66389 * 3 2 1 6 6 H 1.10147 * 114.20469 * 352.42321 * 5 3 2 7 7 C 1.58213 * 99.78755 * 115.81177 * 5 3 2 8 8 H 1.10259 * 120.88293 * 192.98978 * 7 5 3 9 9 C 1.56153 * 103.78235 * 329.37863 * 7 5 3 10 10 C 1.58013 * 109.24818 * 268.54296 * 3 2 1 11 11 H 1.09932 * 116.81780 * 41.40186 * 10 3 2 12 12 C 1.60092 * 106.83021 * 175.41252 * 10 3 2 13 13 C 1.44986 * 96.25960 * 43.31595 * 12 10 3 14 14 H 1.08307 * 90.54882 * 296.05807 * 13 12 10 15 15 C 1.49455 * 151.03636 * 222.40439 * 13 12 10 16 16 N 1.51204 * 109.18942 * 223.64775 * 5 3 2 17 17 C 1.46996 * 110.99130 * 140.24422 * 16 5 3 18 18 C 1.52999 * 109.46911 * 169.99625 * 17 16 5 19 19 C 1.50701 * 115.54977 * 34.41823 * 18 17 16 20 20 H 1.07996 * 119.99910 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99848 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99871 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46758 * 90.00260 * 23 21 19 25 25 H 1.48496 * 109.47274 * 210.00172 * 23 21 19 26 26 H 1.48499 * 109.47503 * 330.00555 * 23 21 19 27 27 C 1.53001 * 117.49883 * 248.74607 * 18 17 16 28 28 C 1.53001 * 117.49788 * 180.08630 * 18 17 16 29 29 H 1.09000 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47847 * 300.00261 * 1 2 3 31 31 H 1.09000 * 109.46734 * 60.00955 * 1 2 3 32 32 H 1.09134 * 112.01149 * 171.00716 * 9 7 5 33 33 H 1.09094 * 112.05264 * 296.60085 * 9 7 5 34 34 H 1.09842 * 112.68636 * 285.69926 * 12 10 3 35 35 H 1.09868 * 112.64488 * 160.84780 * 12 10 3 36 36 H 1.08120 * 112.53342 * 219.11101 * 15 13 12 37 37 H 1.08156 * 112.47532 * 350.85138 * 15 13 12 38 38 H 1.08994 * 109.47322 * 289.99681 * 17 16 5 39 39 H 1.09002 * 109.47284 * 49.99867 * 17 16 5 40 40 H 0.96992 * 120.00059 * 179.97438 * 22 21 19 41 41 H 1.08998 * 117.49992 * 0.02562 * 27 18 17 42 42 H 1.09006 * 117.49638 * 145.02609 * 27 18 17 43 43 H 1.08996 * 117.50146 * 214.98479 * 28 18 17 44 44 H 1.09003 * 117.49649 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0107 1.3066 0.0000 4 1 1.3289 1.9973 0.4920 5 6 3.3722 1.2624 0.7683 6 1 3.5750 0.3048 1.2733 7 6 4.3601 1.6211 -0.4143 8 1 5.4482 1.4803 -0.3053 9 6 3.6508 1.0434 -1.6798 10 6 2.2572 1.7670 -1.4913 11 1 1.4651 1.5381 -2.2184 12 6 2.7925 3.2745 -1.4285 13 6 3.7103 3.0705 -0.3248 14 1 2.8828 2.8359 0.3335 15 6 4.3260 3.5139 0.9628 16 7 3.4689 2.4664 1.6778 17 6 4.0724 2.1043 2.9684 18 6 4.3826 3.3757 3.7609 19 6 3.4078 4.5101 3.5773 20 1 2.5592 4.3919 2.9198 21 6 3.5992 5.6991 4.2489 22 7 4.6328 5.8432 5.0492 23 14 2.3912 7.1055 4.0208 24 1 1.3081 6.9964 5.0309 25 1 3.0996 8.3993 4.1925 26 1 1.8055 7.0389 2.6579 27 6 5.8548 3.7361 3.9702 28 6 5.0214 3.2095 5.1412 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 4.1439 1.3538 -2.6026 33 1 3.5517 -0.0421 -1.6341 34 1 1.9996 3.9959 -1.1887 35 1 3.3060 3.5798 -2.3506 36 1 5.3842 3.2979 1.0121 37 1 4.0548 4.5280 1.2232 38 1 3.3765 1.4845 3.5337 39 1 4.9948 1.5498 2.7954 40 1 4.7676 6.6797 5.5213 41 1 6.6023 3.0677 3.5429 42 1 6.1181 4.7939 3.9755 43 1 4.7368 3.9208 5.9165 44 1 5.2202 2.1943 5.4848 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394347273.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = 165.264828 kcal Electronic energy + Delta-G solvation = -23403.510943 eV Core-core repulsion = 20328.892116 eV Total energy + Delta-G solvation = -3074.618826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.64145 -37.42852 -36.64962 -34.12319 -31.53221 -29.98069 -28.50777 -27.76782 -26.28130 -25.44017 -24.86231 -22.84397 -20.69563 -20.03109 -19.45951 -18.92573 -18.55376 -16.26634 -15.98345 -15.90755 -15.32189 -14.93512 -14.47814 -14.07195 -14.02408 -13.47077 -13.23422 -12.98066 -12.71428 -12.38098 -11.79520 -11.65931 -11.34660 -11.17518 -11.12357 -11.00202 -10.96599 -10.81298 -10.67346 -10.50677 -10.26658 -10.11098 -9.94122 -9.55614 -9.32383 -9.30692 -8.80659 -8.35478 -8.26500 -7.95318 -7.64343 -5.90406 -3.92861 3.30532 3.38203 3.41076 3.64264 4.08808 4.43311 4.49568 4.60234 4.67192 4.86451 5.03603 5.14162 5.23469 5.34776 5.38918 5.40000 5.48918 5.63991 5.69691 5.74753 5.87293 5.91778 5.95828 6.02056 6.12204 6.14252 6.18153 6.24980 6.30125 6.46250 6.57885 6.62526 6.73814 6.91794 6.95036 7.05914 7.18623 7.31587 7.34872 7.38403 7.73487 7.91626 8.11020 8.25995 8.60569 9.06014 9.60832 11.06033 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.006038 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.504158 B = 4635.804902 C = 4903.810830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.094 3.906 4 H 0.069 0.931 5 C 0.059 3.941 6 H 0.091 0.909 7 C -0.129 4.129 8 H 0.111 0.889 9 C -0.111 4.111 10 C -0.130 4.130 11 H 0.106 0.894 12 C -0.035 4.035 13 C -0.300 4.300 14 H 0.144 0.856 15 C 0.127 3.873 16 N -0.501 5.501 17 C 0.072 3.928 18 C 0.022 3.978 19 C -0.455 4.455 20 H 0.071 0.929 21 C 0.053 3.947 22 N -0.883 5.883 23 Si 0.892 3.108 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.274 1.274 27 C -0.190 4.190 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.256 0.744 41 H 0.037 0.963 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -7.921 -11.936 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.036 3.964 4 H 0.087 0.913 5 C -0.048 4.048 6 H 0.109 0.891 7 C -0.148 4.148 8 H 0.129 0.871 9 C -0.149 4.149 10 C -0.149 4.149 11 H 0.124 0.876 12 C -0.072 4.072 13 C -0.318 4.318 14 H 0.159 0.841 15 C 0.003 3.997 16 N -0.227 5.227 17 C -0.055 4.055 18 C 0.021 3.979 19 C -0.492 4.492 20 H 0.089 0.911 21 C -0.147 4.147 22 N -0.522 5.522 23 Si 0.720 3.280 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.199 1.199 27 C -0.228 4.228 28 C -0.228 4.228 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.293 -7.803 -11.592 14.618 hybrid contribution -0.050 0.470 0.186 0.508 sum -4.342 -7.333 -11.405 14.238 Atomic orbital electron populations 1.22749 0.81672 1.02148 0.99937 1.87882 1.19144 1.28632 1.94837 1.24326 0.94558 0.83630 0.93902 0.91308 1.25015 0.92445 0.94048 0.93309 0.89084 1.25474 0.97617 0.97322 0.94356 0.87068 1.23357 0.94908 0.99325 0.97271 1.25625 0.97640 0.95328 0.96260 0.87649 1.20880 0.95591 0.94268 0.96487 1.22825 1.07015 1.00944 1.01060 0.84058 1.22422 0.93993 0.97379 0.85949 1.68311 1.45180 1.07201 1.02010 1.21926 0.95536 0.97180 0.90846 1.18962 0.92085 0.92840 0.94005 1.20637 1.08520 0.95276 1.24809 0.91079 1.25045 0.95540 0.98680 0.95447 1.70022 1.27962 1.25295 1.28928 0.86591 0.81149 0.81726 0.78505 1.20970 1.21480 1.19867 1.22895 0.94397 1.01456 1.04054 1.22817 1.07373 0.97570 0.95054 0.90123 0.93957 0.94399 0.91652 0.91405 0.91435 0.92119 0.92219 0.87108 0.92533 0.96507 0.93327 0.94492 0.87267 0.87209 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.83 101.05 1.09 1.45 16 2 O -0.39 -5.65 10.24 -35.23 -0.36 -6.01 16 3 C 0.09 1.41 2.04 -22.15 -0.05 1.37 16 4 H 0.07 1.13 7.19 -52.03 -0.37 0.76 16 5 C 0.06 0.98 3.97 -60.58 -0.24 0.74 16 6 H 0.09 1.54 7.95 -51.27 -0.41 1.13 16 7 C -0.13 -1.91 5.42 -82.67 -0.45 -2.36 16 8 H 0.11 1.61 8.12 -51.21 -0.42 1.19 16 9 C -0.11 -1.43 6.34 -22.21 -0.14 -1.57 16 10 C -0.13 -1.67 5.36 -81.03 -0.43 -2.11 16 11 H 0.11 1.18 8.22 -51.40 -0.42 0.75 16 12 C -0.03 -0.47 6.55 -26.48 -0.17 -0.64 16 13 C -0.30 -4.80 5.16 -92.73 -0.48 -5.28 16 14 H 0.14 2.47 1.56 -147.78 -0.23 2.24 16 15 C 0.13 2.40 5.68 -2.03 -0.01 2.39 16 16 N -0.50 -9.60 3.51 -244.30 -0.86 -10.46 16 17 C 0.07 1.52 5.22 -3.77 -0.02 1.50 16 18 C 0.02 0.53 1.62 -155.66 -0.25 0.27 16 19 C -0.45 -11.86 6.94 -34.44 -0.24 -12.10 16 20 H 0.07 1.87 7.07 -52.49 -0.37 1.50 16 21 C 0.05 1.41 5.27 -17.82 -0.09 1.32 16 22 N -0.88 -24.21 8.59 55.43 0.48 -23.74 16 23 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.19 -4.65 9.31 -26.69 -0.25 -4.90 16 28 C -0.19 -4.73 9.38 -26.69 -0.25 -4.98 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.77 8.15 -51.85 -0.42 0.34 16 33 H 0.07 0.88 8.07 -51.88 -0.42 0.46 16 34 H 0.07 0.91 8.21 -51.45 -0.42 0.49 16 35 H 0.06 0.75 8.21 -51.44 -0.42 0.33 16 36 H 0.06 1.12 7.65 -52.42 -0.40 0.72 16 37 H 0.11 2.34 6.65 -52.40 -0.35 1.99 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.34 7.85 -51.93 -0.41 -0.07 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.04 0.83 8.05 -51.93 -0.42 0.42 16 42 H 0.11 2.94 6.28 -51.93 -0.33 2.61 16 43 H 0.11 3.02 6.28 -51.93 -0.33 2.69 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -27.09 326.76 -10.20 -37.29 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.38 Total: 7.05 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -1.98 Total: -24.92 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.38 Total: -34.20 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.36 Total: -6.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.09 -10.20 -37.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394347273.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.556 kcal (2) G-P(sol) polarization free energy of solvation -27.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds