Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39866 * 125.89739 * 2 1 4 4 C 1.35320 * 107.91838 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.12626 * 179.97438 * 4 3 2 6 6 N 1.34948 * 107.74419 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.03294 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47413 * 90.00057 * 7 6 4 9 9 N 1.46895 * 109.47473 * 179.97438 * 8 7 6 10 10 C 1.46847 * 110.99982 * 169.99767 * 9 8 7 11 11 C 1.53034 * 109.51345 * 185.84805 * 10 9 8 12 12 C 1.53123 * 109.27992 * 300.80438 * 11 10 9 13 13 C 1.50695 * 109.52378 * 177.57008 * 12 11 10 14 14 H 1.07996 * 120.00302 * 240.32715 * 13 12 11 15 15 C 1.37876 * 119.99975 * 60.32942 * 13 12 11 16 16 N 1.31515 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47176 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46716 * 120.00493 * 17 15 13 20 20 H 1.48502 * 109.47367 * 239.99953 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 12 11 10 22 22 C 1.46843 * 110.99970 * 294.21132 * 9 8 7 23 23 N 1.30843 * 125.89753 * 180.30746 * 2 1 3 24 24 H 1.09002 * 109.46929 * 89.99705 * 1 2 3 25 25 H 1.09005 * 109.47487 * 209.99521 * 1 2 3 26 26 H 1.08996 * 109.47672 * 329.99771 * 1 2 3 27 27 H 1.07998 * 126.04094 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46864 * 270.02928 * 5 4 3 29 29 H 1.09008 * 109.46833 * 30.02488 * 5 4 3 30 30 H 1.08997 * 109.47222 * 150.02462 * 5 4 3 31 31 H 1.09000 * 109.47448 * 330.00222 * 7 6 4 32 32 H 1.09003 * 109.47264 * 210.00095 * 7 6 4 33 33 H 1.09000 * 109.46678 * 59.99695 * 8 7 6 34 34 H 1.09003 * 109.46937 * 300.00239 * 8 7 6 35 35 H 1.09002 * 109.46481 * 305.85957 * 10 9 8 36 36 H 1.08994 * 109.46283 * 65.83811 * 10 9 8 37 37 H 1.08997 * 109.50952 * 60.75924 * 11 10 9 38 38 H 1.08998 * 109.50459 * 180.87821 * 11 10 9 39 39 H 1.09003 * 109.53012 * 297.76758 * 12 11 10 40 40 H 0.96999 * 120.00220 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49981 * 182.39822 * 21 12 11 42 42 H 1.08998 * 109.53089 * 62.30397 * 21 12 11 43 43 H 1.08993 * 109.46313 * 294.17341 * 22 9 8 44 44 H 1.09000 * 109.46480 * 54.15451 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0002 6 7 3.6087 -0.6341 0.0004 7 6 4.7898 -1.5008 0.0003 8 6 5.2010 -1.8028 1.4427 9 7 6.3850 -2.6722 1.4427 10 6 6.9501 -2.7919 2.7927 11 6 8.2594 -3.5817 2.7307 12 6 7.9848 -4.9706 2.1474 13 6 9.2799 -5.7319 2.0283 14 1 9.6189 -6.0729 1.0613 15 6 10.0320 -5.9931 3.1540 16 7 9.6190 -5.5784 4.3317 17 14 11.6370 -6.9374 3.0064 18 1 11.8753 -7.2894 1.5836 19 1 12.7547 -6.0940 3.5011 20 1 11.5574 -8.1789 3.8173 21 6 7.3521 -4.8173 0.7615 22 6 6.0691 -3.9914 0.8804 23 7 2.2742 -1.0599 -0.0057 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9922 2.1598 0.0004 28 1 5.1292 1.8116 -1.0275 29 1 4.6075 2.5331 0.5138 30 1 5.6512 1.0911 0.5142 31 1 5.6093 -0.9981 -0.5134 32 1 4.5564 -2.4332 -0.5137 33 1 4.3815 -2.3054 1.9564 34 1 5.4345 -0.8703 1.9567 35 1 7.1446 -1.7974 3.1945 36 1 6.2423 -3.3122 3.4379 37 1 8.9726 -3.0551 2.0966 38 1 8.6707 -3.6838 3.7349 39 1 7.3017 -5.5121 2.8019 40 1 10.1479 -5.7625 5.1236 41 1 7.1150 -5.8020 0.3588 42 1 8.0508 -4.3105 0.0959 43 1 5.3653 -4.5060 1.5346 44 1 5.6238 -3.8683 -0.1069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397124609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = 61.441248 kcal Electronic energy + Delta-G solvation = -21543.376712 eV Core-core repulsion = 18496.548509 eV Total energy + Delta-G solvation = -3046.828204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32606 -38.42691 -35.05422 -33.57275 -32.22601 -31.34640 -30.12929 -29.44778 -27.19492 -26.90420 -25.16464 -23.06136 -21.94162 -21.04778 -20.43281 -19.25322 -18.63569 -16.81645 -16.29608 -15.57608 -15.12562 -14.84163 -14.44890 -14.12903 -13.85945 -13.71734 -13.42675 -13.21412 -13.04958 -12.99246 -12.63420 -12.52932 -12.39952 -12.26603 -11.93298 -11.66287 -11.40349 -11.07220 -10.97188 -10.78452 -10.51516 -10.44692 -10.24679 -10.01286 -9.47767 -9.13052 -8.95483 -8.73704 -8.51969 -8.30901 -7.90527 -5.98659 -4.03914 1.82198 2.43733 2.71499 3.29507 3.37761 3.41784 4.29410 4.44176 4.48618 4.56104 4.85868 4.94502 5.03658 5.21753 5.31266 5.31776 5.32692 5.46170 5.52230 5.57193 5.62768 5.64838 5.73679 5.81119 5.88442 5.89679 6.04835 6.15141 6.17448 6.27351 6.53269 6.59011 6.65744 6.81160 6.98730 7.05563 7.09662 7.37829 7.53122 7.59051 7.74464 7.79041 8.02166 8.13016 8.46599 9.00045 9.60694 11.07650 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.003108 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.544411 B = 9008.090353 C = 9197.923023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.066 3.934 3 C -0.279 4.279 4 C 0.088 3.912 5 C -0.095 4.095 6 N -0.363 5.363 7 C 0.134 3.866 8 C 0.042 3.958 9 N -0.532 5.532 10 C 0.059 3.941 11 C -0.104 4.104 12 C 0.047 3.953 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.106 4.106 22 C 0.055 3.945 23 N -0.296 5.296 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.021 0.979 40 H 0.259 0.741 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 14.091 -7.585 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.309 4.309 4 C -0.040 4.040 5 C -0.154 4.154 6 N -0.145 5.145 7 C 0.012 3.988 8 C -0.088 4.088 9 N -0.257 5.257 10 C -0.068 4.068 11 C -0.142 4.142 12 C 0.028 3.972 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.144 4.144 22 C -0.073 4.073 23 N -0.119 5.119 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.335 12.920 -7.698 19.451 hybrid contribution 0.280 -0.012 0.595 0.657 sum -12.055 12.908 -7.103 19.037 Atomic orbital electron populations 1.20136 0.86951 1.03083 1.02690 1.22292 0.96834 0.90919 0.99988 1.21061 0.91005 0.99551 1.19258 1.21151 0.97324 0.84811 1.00732 1.20488 0.93312 0.98175 1.03380 1.48616 1.05325 1.04100 1.56459 1.21770 0.83236 0.94925 0.98851 1.22359 0.93142 0.98407 0.94887 1.61981 1.26538 1.12900 1.24317 1.22284 0.98422 0.99501 0.86559 1.21675 0.92681 0.95914 1.03917 1.18696 0.95385 0.92800 0.90283 1.21236 1.05683 1.34416 0.93408 0.92670 1.24977 0.97852 0.95834 0.95420 1.69881 1.38498 1.46618 0.98162 0.86573 0.83834 0.79715 0.78090 1.19825 1.21080 1.21140 1.21682 0.94585 0.97006 1.01089 1.22235 0.98505 0.88766 0.97781 1.77342 0.86463 1.22733 1.25358 0.90781 0.91083 0.90643 0.83913 0.90210 0.89750 0.90582 0.88103 0.88598 0.94504 0.90871 0.92573 0.95765 0.93697 0.88820 0.96130 0.93143 0.93071 0.92400 0.95510 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.23 16 2 C 0.07 0.83 7.22 -82.40 -0.59 0.23 16 3 C -0.28 -3.22 10.65 -40.01 -0.43 -3.65 16 4 C 0.09 1.04 6.93 -82.26 -0.57 0.47 16 5 C -0.10 -0.79 9.90 36.01 0.36 -0.44 16 6 N -0.36 -4.98 3.61 -57.14 -0.21 -5.19 16 7 C 0.13 1.74 6.00 -4.04 -0.02 1.72 16 8 C 0.04 0.61 5.28 -3.83 -0.02 0.59 16 9 N -0.53 -9.15 4.66 -234.68 -1.09 -10.24 16 10 C 0.06 1.15 5.46 -3.84 -0.02 1.13 16 11 C -0.10 -2.40 5.12 -26.65 -0.14 -2.54 16 12 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 13 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 16 N -0.89 -25.31 11.37 55.43 0.63 -24.68 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.11 -2.19 5.32 -26.64 -0.14 -2.33 16 22 C 0.05 0.97 5.29 -3.83 -0.02 0.95 16 23 N -0.30 -4.48 12.58 33.67 0.42 -4.05 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.65 7.72 -51.93 -0.40 0.25 16 31 H 0.10 1.17 7.66 -51.93 -0.40 0.77 16 32 H 0.10 1.29 6.43 -51.93 -0.33 0.96 16 33 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.07 1.02 7.99 -51.93 -0.41 0.61 16 35 H 0.06 0.99 8.02 -51.93 -0.42 0.57 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -30.15 348.71 -9.46 -39.61 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.64 Total: -1.13 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.81 Total: -15.78 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.25 Total: -44.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.15 -9.46 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397124609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.053 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds