Wall clock time and date at job start Mon Mar 30 2020 02:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39866 * 125.89739 * 2 1 4 4 C 1.35320 * 107.91838 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.12626 * 179.97438 * 4 3 2 6 6 N 1.34948 * 107.74419 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.03294 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47413 * 90.00057 * 7 6 4 9 9 N 1.46895 * 109.47473 * 179.97438 * 8 7 6 10 10 C 1.46847 * 110.99982 * 169.99767 * 9 8 7 11 11 C 1.53034 * 109.51345 * 185.84805 * 10 9 8 12 12 C 1.53123 * 109.27992 * 300.80438 * 11 10 9 13 13 C 1.50695 * 109.52378 * 177.57008 * 12 11 10 14 14 H 1.07996 * 120.00302 * 240.32715 * 13 12 11 15 15 C 1.37876 * 119.99975 * 60.32942 * 13 12 11 16 16 N 1.31515 * 120.00042 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47176 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46716 * 120.00493 * 17 15 13 20 20 H 1.48502 * 109.47367 * 239.99953 * 17 15 13 21 21 C 1.53127 * 109.15019 * 57.67185 * 12 11 10 22 22 C 1.46843 * 110.99970 * 294.21132 * 9 8 7 23 23 N 1.30843 * 125.89753 * 180.30746 * 2 1 3 24 24 H 1.09002 * 109.46929 * 89.99705 * 1 2 3 25 25 H 1.09005 * 109.47487 * 209.99521 * 1 2 3 26 26 H 1.08996 * 109.47672 * 329.99771 * 1 2 3 27 27 H 1.07998 * 126.04094 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.46864 * 270.02928 * 5 4 3 29 29 H 1.09008 * 109.46833 * 30.02488 * 5 4 3 30 30 H 1.08997 * 109.47222 * 150.02462 * 5 4 3 31 31 H 1.09000 * 109.47448 * 330.00222 * 7 6 4 32 32 H 1.09003 * 109.47264 * 210.00095 * 7 6 4 33 33 H 1.09000 * 109.46678 * 59.99695 * 8 7 6 34 34 H 1.09003 * 109.46937 * 300.00239 * 8 7 6 35 35 H 1.09002 * 109.46481 * 305.85957 * 10 9 8 36 36 H 1.08994 * 109.46283 * 65.83811 * 10 9 8 37 37 H 1.08997 * 109.50952 * 60.75924 * 11 10 9 38 38 H 1.08998 * 109.50459 * 180.87821 * 11 10 9 39 39 H 1.09003 * 109.53012 * 297.76758 * 12 11 10 40 40 H 0.96999 * 120.00220 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.49981 * 182.39822 * 21 12 11 42 42 H 1.08998 * 109.53089 * 62.30397 * 21 12 11 43 43 H 1.08993 * 109.46313 * 294.17341 * 22 9 8 44 44 H 1.09000 * 109.46480 * 54.15451 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0006 5 6 4.8350 1.5989 0.0002 6 7 3.6087 -0.6341 0.0004 7 6 4.7898 -1.5008 0.0003 8 6 5.2010 -1.8028 1.4427 9 7 6.3850 -2.6722 1.4427 10 6 6.9501 -2.7919 2.7927 11 6 8.2594 -3.5817 2.7307 12 6 7.9848 -4.9706 2.1474 13 6 9.2799 -5.7319 2.0283 14 1 9.6189 -6.0729 1.0613 15 6 10.0320 -5.9931 3.1540 16 7 9.6190 -5.5784 4.3317 17 14 11.6370 -6.9374 3.0064 18 1 11.8753 -7.2894 1.5836 19 1 12.7547 -6.0940 3.5011 20 1 11.5574 -8.1789 3.8173 21 6 7.3521 -4.8173 0.7615 22 6 6.0691 -3.9914 0.8804 23 7 2.2742 -1.0599 -0.0057 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9922 2.1598 0.0004 28 1 5.1292 1.8116 -1.0275 29 1 4.6075 2.5331 0.5138 30 1 5.6512 1.0911 0.5142 31 1 5.6093 -0.9981 -0.5134 32 1 4.5564 -2.4332 -0.5137 33 1 4.3815 -2.3054 1.9564 34 1 5.4345 -0.8703 1.9567 35 1 7.1446 -1.7974 3.1945 36 1 6.2423 -3.3122 3.4379 37 1 8.9726 -3.0551 2.0966 38 1 8.6707 -3.6838 3.7349 39 1 7.3017 -5.5121 2.8019 40 1 10.1479 -5.7625 5.1236 41 1 7.1150 -5.8020 0.3588 42 1 8.0508 -4.3105 0.0959 43 1 5.3653 -4.5060 1.5346 44 1 5.6238 -3.8683 -0.1069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397124609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:44 Heat of formation + Delta-G solvation = 43.772324 kcal Electronic energy + Delta-G solvation = -21544.142894 eV Core-core repulsion = 18496.548509 eV Total energy + Delta-G solvation = -3047.594386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22813 -39.96320 -36.47722 -34.96322 -33.48449 -32.68612 -31.62385 -30.66965 -28.39030 -27.84775 -26.72647 -24.55221 -23.58408 -22.50304 -21.32318 -20.41358 -20.13516 -18.48318 -17.71975 -16.84633 -16.47284 -16.21683 -15.99687 -15.39523 -15.03273 -14.77982 -14.68302 -14.37857 -14.23645 -14.08494 -13.96710 -13.75503 -13.51343 -13.21207 -13.05916 -12.88543 -12.85346 -12.63338 -12.58739 -12.37636 -12.14860 -11.96020 -11.89061 -11.42068 -11.38375 -10.82789 -10.68274 -10.39859 -10.01783 -9.44139 -9.35110 -8.08708 -6.21928 0.91635 1.39856 1.42021 1.51038 1.53233 1.85527 2.43539 2.96046 3.18551 3.54848 3.75919 3.82000 3.96652 4.11566 4.19434 4.24235 4.30687 4.39671 4.50060 4.56148 4.58808 4.66072 4.74031 4.76967 4.81581 4.83521 4.83960 4.92831 4.98994 5.05680 5.07557 5.12397 5.20789 5.31152 5.37053 5.53281 5.61617 5.81572 5.94243 5.96452 6.10214 6.18680 6.24998 6.39600 6.83174 6.89839 7.46090 8.96184 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.041747 B = 0.003108 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.544411 B = 9008.090353 C = 9197.923023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.289 4.289 4 C 0.083 3.917 5 C -0.093 4.093 6 N -0.377 5.377 7 C 0.141 3.859 8 C 0.052 3.948 9 N -0.527 5.527 10 C 0.070 3.930 11 C -0.094 4.094 12 C 0.042 3.958 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.283 1.283 21 C -0.098 4.098 22 C 0.061 3.939 23 N -0.345 5.345 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.019 0.981 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.010 0.990 37 H 0.038 0.962 38 H 0.062 0.938 39 H -0.016 1.016 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.164 15.893 -8.837 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.318 4.318 4 C -0.044 4.044 5 C -0.151 4.151 6 N -0.160 5.160 7 C 0.020 3.980 8 C -0.077 4.077 9 N -0.253 5.253 10 C -0.058 4.058 11 C -0.132 4.132 12 C 0.023 3.977 13 C -0.568 4.568 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.209 1.209 21 C -0.136 4.136 22 C -0.066 4.066 23 N -0.168 5.168 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.116 0.884 27 H 0.185 0.815 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.002 0.998 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.594 14.732 -8.963 21.354 hybrid contribution 0.302 -0.540 0.991 1.168 sum -12.292 14.192 -7.972 20.398 Atomic orbital electron populations 1.20269 0.84758 1.03938 1.03767 1.22966 0.98423 0.90877 0.98550 1.21454 0.90853 1.00470 1.18984 1.21796 0.98811 0.84374 0.99452 1.20612 0.91723 0.98181 1.04579 1.48650 1.04944 1.04863 1.57505 1.21646 0.83858 0.95182 0.97334 1.22306 0.91199 0.97820 0.96387 1.61923 1.27923 1.12789 1.22624 1.22063 0.96202 0.99748 0.87789 1.21418 0.94474 0.95676 1.01638 1.18682 0.94011 0.92924 0.92037 1.21598 1.06873 1.34968 0.93391 0.92958 1.25751 1.01088 0.96746 0.95144 1.70021 1.39682 1.47427 0.98718 0.85574 0.79892 0.78344 0.78249 1.19148 1.20532 1.20880 1.21540 0.95738 0.97890 0.98426 1.22157 0.96672 0.88578 0.99241 1.77290 0.87452 1.24461 1.27627 0.89498 0.91564 0.88428 0.81458 0.88730 0.87869 0.90734 0.86227 0.89233 0.96261 0.89733 0.90364 0.97150 0.94326 0.91957 0.99773 0.93112 0.92884 0.92251 0.96673 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.45 71.24 0.74 -0.34 16 2 C 0.06 1.37 7.22 43.10 0.31 1.68 16 3 C -0.29 -5.99 10.65 21.99 0.23 -5.76 16 4 C 0.08 1.77 6.93 41.41 0.29 2.06 16 5 C -0.09 -1.26 9.90 71.24 0.71 -0.55 16 6 N -0.38 -9.80 3.61 -334.69 -1.21 -11.01 16 7 C 0.14 3.43 6.00 86.38 0.52 3.95 16 8 C 0.05 1.45 5.28 86.30 0.46 1.91 16 9 N -0.53 -17.55 4.66 -896.39 -4.17 -21.73 16 10 C 0.07 2.68 5.46 86.32 0.47 3.15 16 11 C -0.09 -4.44 5.12 30.65 0.16 -4.28 16 12 C 0.04 2.13 2.16 -11.46 -0.02 2.10 16 13 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.01 0.61 5.31 84.65 0.45 1.06 16 16 N -0.92 -53.39 11.37 21.45 0.24 -53.14 16 17 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C -0.10 -4.05 5.32 30.65 0.16 -3.89 16 22 C 0.06 2.13 5.29 86.33 0.46 2.59 16 23 N -0.35 -10.19 12.58 -47.38 -0.60 -10.79 16 24 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.05 7.72 -2.39 -0.02 1.03 16 31 H 0.12 2.44 7.66 -2.39 -0.02 2.42 16 32 H 0.09 2.27 6.43 -2.39 -0.02 2.26 16 33 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 34 H 0.08 2.18 7.99 -2.39 -0.02 2.17 16 35 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 36 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 3.34 6.17 -2.39 -0.01 3.33 16 39 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.09 2.60 6.21 -2.39 -0.01 2.58 16 Total: -1.00 -66.43 348.71 2.39 -64.04 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.95 Total: 12.29 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 5.15 Total: -25.56 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -5.73 Total: -96.67 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.43 2.39 -64.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397124609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.814 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds