Wall clock time and date at job start Mon Mar 30 2020 02:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39867 * 125.89773 * 2 1 4 4 C 1.35314 * 107.92280 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.13220 * 179.97438 * 4 3 2 6 6 N 1.34949 * 107.74323 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.04064 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47543 * 89.99436 * 7 6 4 9 9 N 1.46892 * 109.47415 * 180.02562 * 8 7 6 10 10 C 1.46842 * 111.00192 * 66.05041 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47392 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47180 * 300.00067 * 19 17 15 23 23 C 1.46848 * 110.99938 * 190.25970 * 9 8 7 24 24 N 1.30837 * 125.89857 * 180.30774 * 2 1 3 25 25 H 1.09001 * 109.47428 * 89.99581 * 1 2 3 26 26 H 1.08993 * 109.47019 * 210.00131 * 1 2 3 27 27 H 1.09003 * 109.46988 * 330.00320 * 1 2 3 28 28 H 1.08001 * 126.04229 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47109 * 270.02480 * 5 4 3 30 30 H 1.09001 * 109.47253 * 30.02256 * 5 4 3 31 31 H 1.09001 * 109.47501 * 150.02254 * 5 4 3 32 32 H 1.09001 * 109.46906 * 329.99974 * 7 6 4 33 33 H 1.09000 * 109.47663 * 210.00381 * 7 6 4 34 34 H 1.09001 * 109.46580 * 60.00338 * 8 7 6 35 35 H 1.09000 * 109.47412 * 300.01098 * 8 7 6 36 36 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 37 37 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 38 38 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 39 39 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 40 40 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 41 41 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 42 42 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 44 44 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8350 1.5989 -0.0013 6 7 3.6088 -0.6341 -0.0015 7 6 4.7899 -1.5008 -0.0029 8 6 5.2022 -1.8034 1.4391 9 7 6.3868 -2.6720 1.4377 10 6 7.5516 -1.9724 0.8809 11 6 8.7246 -2.9479 0.7602 12 6 9.0579 -3.5115 2.1443 13 6 7.8148 -4.1924 2.7237 14 1 7.5273 -5.0286 2.0864 15 6 8.1182 -4.6972 4.1109 16 1 7.5480 -4.3356 4.9538 17 6 9.1236 -5.6207 4.3038 18 7 9.8181 -6.0607 3.2775 19 14 9.4992 -6.2470 6.0232 20 1 8.2931 -6.9074 6.5840 21 1 10.6154 -7.2244 5.9611 22 1 9.8880 -5.1067 6.8915 23 6 6.6677 -3.1811 2.7861 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 5.1286 1.8121 -1.0291 30 1 4.6080 2.5328 0.5128 31 1 5.6516 1.0909 0.5118 32 1 5.6090 -0.9978 -0.5169 33 1 4.5560 -2.4329 -0.5173 34 1 4.3831 -2.3064 1.9531 35 1 5.4360 -0.8713 1.9534 36 1 7.8300 -1.1495 1.5393 37 1 7.3024 -1.5802 -0.1052 38 1 9.5937 -2.4245 0.3615 39 1 8.4525 -3.7640 0.0908 40 1 9.8644 -4.2395 2.0567 41 1 9.3692 -2.7005 2.8026 42 1 10.5257 -6.7101 3.4132 43 1 6.9501 -2.3525 3.4356 44 1 5.7767 -3.6669 3.1838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397844644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:45 Heat of formation + Delta-G solvation = 61.841818 kcal Electronic energy + Delta-G solvation = -21645.270439 eV Core-core repulsion = 18598.459606 eV Total energy + Delta-G solvation = -3046.810834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30843 -38.42264 -35.00695 -33.45828 -32.30554 -31.54718 -30.14665 -29.48413 -27.14633 -26.61867 -25.02725 -23.51244 -21.83828 -21.03221 -20.33862 -19.27262 -18.65530 -16.78880 -16.31931 -15.50757 -15.02403 -14.89884 -14.49632 -14.02826 -13.80748 -13.69489 -13.47000 -13.33861 -13.03564 -12.90069 -12.68860 -12.49692 -12.46246 -12.22442 -11.91748 -11.64873 -11.61329 -11.04207 -10.94881 -10.71783 -10.68894 -10.47708 -10.15203 -9.88283 -9.52353 -9.21394 -8.98452 -8.75231 -8.50135 -8.32274 -7.81861 -5.99382 -4.05812 1.84052 2.46160 2.73567 3.31311 3.36047 3.38578 4.30066 4.45774 4.48979 4.57706 4.88661 4.94785 5.03789 5.22418 5.28382 5.30614 5.35007 5.48846 5.53241 5.56272 5.58871 5.62587 5.73317 5.77929 5.90346 5.95868 5.97410 6.16310 6.19769 6.33625 6.44313 6.62788 6.67775 6.69097 6.89853 7.03756 7.15705 7.33104 7.53249 7.67555 7.74394 7.77410 8.04689 8.14043 8.44859 8.97738 9.58623 11.06598 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.003415 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.367860 B = 8197.597587 C = 8708.018368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.065 3.935 3 C -0.279 4.279 4 C 0.085 3.915 5 C -0.094 4.094 6 N -0.362 5.362 7 C 0.134 3.866 8 C 0.044 3.956 9 N -0.534 5.534 10 C 0.058 3.942 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.056 3.944 14 H 0.035 0.965 15 C -0.517 4.517 16 H 0.053 0.947 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.070 3.930 24 N -0.292 5.292 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.260 0.740 43 H 0.020 0.980 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 14.859 -8.248 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.308 4.308 4 C -0.043 4.043 5 C -0.152 4.152 6 N -0.144 5.144 7 C 0.012 3.988 8 C -0.086 4.086 9 N -0.259 5.259 10 C -0.070 4.070 11 C -0.155 4.155 12 C -0.150 4.150 13 C 0.037 3.963 14 H 0.053 0.947 15 C -0.556 4.556 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.057 4.057 24 N -0.115 5.115 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.523 12.953 -8.594 18.771 hybrid contribution 0.486 1.241 1.508 2.013 sum -10.037 14.194 -7.086 18.773 Atomic orbital electron populations 1.20135 0.86929 1.03106 1.02678 1.22297 0.96855 0.90895 1.00059 1.21053 0.90983 0.99562 1.19197 1.21119 0.97279 0.84873 1.01035 1.20467 0.93285 0.98232 1.03263 1.48624 1.05405 1.04009 1.56375 1.21777 0.82999 0.95025 0.98966 1.22355 0.95302 0.96211 0.94721 1.61947 1.02840 1.35461 1.25694 1.22140 0.91574 0.95591 0.97684 1.21677 0.95002 0.98071 1.00759 1.21666 1.02418 0.99166 0.91703 1.18663 0.88985 0.92392 0.96246 0.94677 1.21099 1.17477 1.24034 0.92945 0.92896 1.24922 0.96033 0.96125 0.96679 1.69867 1.22144 1.31125 1.29556 0.86679 0.77892 0.78640 0.84898 1.20263 1.21282 1.20384 1.22334 1.00521 0.97716 0.85134 1.77365 0.86390 1.22635 1.25102 0.90794 0.91017 0.90675 0.83940 0.90230 0.89700 0.91000 0.89048 0.87791 0.90244 0.95152 0.95681 0.92461 0.93396 0.91954 0.88973 0.95144 0.92957 0.96152 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.45 36.01 0.38 -0.25 16 2 C 0.06 0.84 7.22 -82.40 -0.59 0.24 16 3 C -0.28 -3.29 10.65 -40.01 -0.43 -3.71 16 4 C 0.08 1.03 6.93 -82.27 -0.57 0.46 16 5 C -0.09 -0.81 9.90 36.00 0.36 -0.45 16 6 N -0.36 -5.09 3.61 -57.15 -0.21 -5.29 16 7 C 0.13 1.79 6.00 -4.04 -0.02 1.76 16 8 C 0.04 0.67 5.28 -3.83 -0.02 0.65 16 9 N -0.53 -9.56 4.66 -234.67 -1.09 -10.65 16 10 C 0.06 0.95 5.29 -3.84 -0.02 0.93 16 11 C -0.12 -2.19 6.10 -26.65 -0.16 -2.36 16 12 C -0.11 -2.58 5.02 -26.61 -0.13 -2.72 16 13 C 0.06 1.39 2.27 -91.68 -0.21 1.18 16 14 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.52 -14.12 8.57 -34.44 -0.30 -14.42 16 16 H 0.05 1.43 7.75 -52.48 -0.41 1.02 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.18 11.35 55.43 0.63 -24.55 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.07 1.47 4.68 -3.83 -0.02 1.45 16 24 N -0.29 -4.50 12.58 33.67 0.42 -4.08 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.64 7.72 -51.93 -0.40 0.24 16 32 H 0.09 1.05 5.95 -51.93 -0.31 0.74 16 33 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.32 7.98 -51.93 -0.41 0.91 16 35 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.78 6.22 -51.93 -0.32 0.46 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.29 8.01 -51.93 -0.42 0.88 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -30.09 348.68 -9.49 -39.58 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.64 Total: -0.89 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.83 Total: -15.57 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.25 Total: -44.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.09 -9.49 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397844644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.427 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds