Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39867 * 125.89773 * 2 1 4 4 C 1.35314 * 107.92280 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.13220 * 179.97438 * 4 3 2 6 6 N 1.34949 * 107.74323 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.04064 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47543 * 89.99436 * 7 6 4 9 9 N 1.46892 * 109.47415 * 180.02562 * 8 7 6 10 10 C 1.46842 * 111.00192 * 66.05041 * 9 8 7 11 11 C 1.53039 * 109.52666 * 185.84212 * 10 9 8 12 12 C 1.53123 * 109.27546 * 300.81951 * 11 10 9 13 13 C 1.53120 * 109.21163 * 57.62218 * 12 11 10 14 14 H 1.09000 * 109.50719 * 62.32149 * 13 12 11 15 15 C 1.50705 * 109.50009 * 182.43636 * 13 12 11 16 16 H 1.08003 * 119.99487 * 120.00018 * 15 13 12 17 17 C 1.37877 * 119.99919 * 299.99707 * 15 13 12 18 18 N 1.31505 * 120.00221 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99678 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47392 * 60.00109 * 19 17 15 21 21 H 1.48497 * 109.46878 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47180 * 300.00067 * 19 17 15 23 23 C 1.46848 * 110.99938 * 190.25970 * 9 8 7 24 24 N 1.30837 * 125.89857 * 180.30774 * 2 1 3 25 25 H 1.09001 * 109.47428 * 89.99581 * 1 2 3 26 26 H 1.08993 * 109.47019 * 210.00131 * 1 2 3 27 27 H 1.09003 * 109.46988 * 330.00320 * 1 2 3 28 28 H 1.08001 * 126.04229 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47109 * 270.02480 * 5 4 3 30 30 H 1.09001 * 109.47253 * 30.02256 * 5 4 3 31 31 H 1.09001 * 109.47501 * 150.02254 * 5 4 3 32 32 H 1.09001 * 109.46906 * 329.99974 * 7 6 4 33 33 H 1.09000 * 109.47663 * 210.00381 * 7 6 4 34 34 H 1.09001 * 109.46580 * 60.00338 * 8 7 6 35 35 H 1.09000 * 109.47412 * 300.01098 * 8 7 6 36 36 H 1.08997 * 109.46434 * 65.82550 * 10 9 8 37 37 H 1.09006 * 109.45199 * 305.85056 * 10 9 8 38 38 H 1.08999 * 109.50420 * 180.88146 * 11 10 9 39 39 H 1.09002 * 109.53427 * 60.77649 * 11 10 9 40 40 H 1.09002 * 109.52319 * 177.56011 * 12 11 10 41 41 H 1.08995 * 109.52318 * 297.68693 * 12 11 10 42 42 H 0.96996 * 120.00390 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.46555 * 294.17605 * 23 9 8 44 44 H 1.08998 * 109.46337 * 54.15813 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8350 1.5989 -0.0013 6 7 3.6088 -0.6341 -0.0015 7 6 4.7899 -1.5008 -0.0029 8 6 5.2022 -1.8034 1.4391 9 7 6.3868 -2.6720 1.4377 10 6 7.5516 -1.9724 0.8809 11 6 8.7246 -2.9479 0.7602 12 6 9.0579 -3.5115 2.1443 13 6 7.8148 -4.1924 2.7237 14 1 7.5273 -5.0286 2.0864 15 6 8.1182 -4.6972 4.1109 16 1 7.5480 -4.3356 4.9538 17 6 9.1236 -5.6207 4.3038 18 7 9.8181 -6.0607 3.2775 19 14 9.4992 -6.2470 6.0232 20 1 8.2931 -6.9074 6.5840 21 1 10.6154 -7.2244 5.9611 22 1 9.8880 -5.1067 6.8915 23 6 6.6677 -3.1811 2.7861 24 7 2.2742 -1.0598 -0.0057 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 5.1286 1.8121 -1.0291 30 1 4.6080 2.5328 0.5128 31 1 5.6516 1.0909 0.5118 32 1 5.6090 -0.9978 -0.5169 33 1 4.5560 -2.4329 -0.5173 34 1 4.3831 -2.3064 1.9531 35 1 5.4360 -0.8713 1.9534 36 1 7.8300 -1.1495 1.5393 37 1 7.3024 -1.5802 -0.1052 38 1 9.5937 -2.4245 0.3615 39 1 8.4525 -3.7640 0.0908 40 1 9.8644 -4.2395 2.0567 41 1 9.3692 -2.7005 2.8026 42 1 10.5257 -6.7101 3.4132 43 1 6.9501 -2.3525 3.4356 44 1 5.7767 -3.6669 3.1838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397844644.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = 43.963148 kcal Electronic energy + Delta-G solvation = -21646.045716 eV Core-core repulsion = 18598.459606 eV Total energy + Delta-G solvation = -3047.586111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23464 -39.95387 -36.40959 -34.92373 -33.63103 -32.71141 -31.78623 -30.64298 -27.98460 -27.69499 -26.95301 -24.87343 -23.46494 -22.47151 -21.28823 -20.43934 -20.12667 -18.48233 -17.68723 -16.89972 -16.35933 -16.20811 -16.02921 -15.36101 -15.02562 -14.81245 -14.67175 -14.40667 -14.25134 -14.05675 -13.92967 -13.69745 -13.59124 -13.29338 -13.11524 -12.84991 -12.83641 -12.68013 -12.61882 -12.51483 -12.17443 -11.82331 -11.74548 -11.40549 -11.40347 -10.92732 -10.69761 -10.39819 -10.01752 -9.43871 -9.26133 -8.09885 -6.24323 0.91361 1.40318 1.41500 1.48930 1.51501 1.85420 2.41238 3.02471 3.17006 3.52854 3.75905 3.80975 3.97233 4.08660 4.20765 4.22352 4.29835 4.41575 4.52312 4.55442 4.60295 4.67891 4.72095 4.76174 4.81378 4.84267 4.85929 4.95041 4.98599 5.04609 5.07532 5.10453 5.14717 5.35506 5.38663 5.49486 5.61649 5.81349 5.90107 6.07064 6.12295 6.16997 6.25332 6.41401 6.83495 6.87533 7.43548 8.94440 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.003415 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.367860 B = 8197.597587 C = 8708.018368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.288 4.288 4 C 0.081 3.919 5 C -0.092 4.092 6 N -0.377 5.377 7 C 0.143 3.857 8 C 0.055 3.945 9 N -0.543 5.543 10 C 0.061 3.939 11 C -0.111 4.111 12 C -0.105 4.105 13 C 0.054 3.946 14 H -0.003 1.003 15 C -0.541 4.541 16 H 0.049 0.951 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.953 3.047 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.084 3.916 24 N -0.344 5.344 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.018 0.982 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.073 17.323 -8.738 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C -0.317 4.317 4 C -0.047 4.047 5 C -0.150 4.150 6 N -0.159 5.159 7 C 0.022 3.978 8 C -0.075 4.075 9 N -0.268 5.268 10 C -0.066 4.066 11 C -0.149 4.149 12 C -0.143 4.143 13 C 0.035 3.965 14 H 0.015 0.985 15 C -0.579 4.579 16 H 0.067 0.933 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.044 4.044 24 N -0.167 5.167 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.186 0.814 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.864 15.434 -9.091 20.950 hybrid contribution 0.538 0.497 1.641 1.797 sum -10.326 15.931 -7.451 20.394 Atomic orbital electron populations 1.20271 0.84722 1.03950 1.03788 1.22979 0.98455 0.90855 0.98558 1.21456 0.90840 1.00486 1.18944 1.21793 0.98851 0.84374 0.99659 1.20606 0.91621 0.98158 1.04659 1.48654 1.04996 1.04813 1.57479 1.21627 0.83815 0.95160 0.97211 1.22237 0.93335 0.95529 0.96351 1.61838 1.04387 1.37097 1.23465 1.22187 0.89897 0.94734 0.99803 1.21593 0.97276 0.98534 0.97469 1.21470 1.00412 0.98027 0.94429 1.18573 0.91139 0.92285 0.94463 0.98524 1.21489 1.17694 1.24635 0.94127 0.93268 1.25694 0.95880 0.96330 1.00404 1.70011 1.22430 1.31427 1.31394 0.85689 0.77752 0.78220 0.80451 1.19855 1.20766 1.19611 1.21969 0.98528 0.96725 0.87151 1.77315 0.87449 1.24458 1.27456 0.89457 0.91552 0.88424 0.81417 0.88443 0.87891 0.91071 0.86524 0.88967 0.92318 0.94332 0.94901 0.88480 0.90653 0.92964 0.92288 0.95757 0.92972 0.96376 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.45 71.24 0.74 -0.38 16 2 C 0.06 1.40 7.22 43.10 0.31 1.72 16 3 C -0.29 -6.13 10.65 21.99 0.23 -5.90 16 4 C 0.08 1.76 6.93 41.40 0.29 2.04 16 5 C -0.09 -1.25 9.90 71.23 0.71 -0.55 16 6 N -0.38 -10.10 3.61 -334.71 -1.21 -11.31 16 7 C 0.14 3.61 6.00 86.38 0.52 4.13 16 8 C 0.05 1.62 5.28 86.30 0.46 2.08 16 9 N -0.54 -19.04 4.66 -896.37 -4.17 -23.21 16 10 C 0.06 1.85 5.29 86.33 0.46 2.31 16 11 C -0.11 -4.02 6.10 30.65 0.19 -3.83 16 12 C -0.11 -4.96 5.02 30.68 0.15 -4.80 16 13 C 0.05 2.78 2.27 -11.48 -0.03 2.75 16 14 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 15 C -0.54 -30.41 8.57 25.60 0.22 -30.19 16 16 H 0.05 2.72 7.75 -2.91 -0.02 2.70 16 17 C 0.02 0.90 5.30 84.66 0.45 1.35 16 18 N -0.91 -53.19 11.35 21.45 0.24 -52.95 16 19 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.08 3.60 4.68 86.33 0.40 4.01 16 24 N -0.34 -10.48 12.58 -47.38 -0.60 -11.08 16 25 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.00 7.72 -2.39 -0.02 0.98 16 32 H 0.12 2.29 5.95 -2.39 -0.01 2.28 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.06 1.98 7.98 -2.39 -0.02 1.96 16 35 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 2.24 6.22 -2.38 -0.01 2.22 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 41 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 2.20 8.01 -2.39 -0.02 2.18 16 Total: -1.00 -67.64 348.68 2.34 -65.30 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.95 Total: 12.45 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.10 Total: -25.26 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -5.73 Total: -98.55 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.64 2.34 -65.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397844644.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.265 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds